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Oryza sativa
cluster # 12371 cluster # 12371       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12371#0 length = 2070 sequences # 8  
consensus_12371#1 length = 634 sequences # 1  
consensus_12371#2 length = 435 sequences # 1  

consensusID : consensus_12371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2070
fasta sequence
                              [CCGCCGCATCGCTAAACCCCCCATTTTTAGGGTTTCTCGCCGCGACGCGGTGCGACGCCTCCTCTTCTTCTCCAACCCAGAGTTCCACACGCTCCAAATCCTTATTCGAATCCCCTCCACGCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCGTCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGCCTCGGCCGCCTGCGCCTCACCCAGGCGACGCTTGGAGGGGAGGCTGGGAAGGTGGAGAAGGGCGGCGGTGGGAAGAAGAACGTGGTGCAGTTACAGTGCACTGTGAAGAACAAGGATCCCGTGTTCCTGTGTGCCCTGGTGCCGGGGCAGTCGGAGACTTGCCACCTGGAGCTCGAGTTCGAGGAGAAGCACGTCACGTTCTCGGTGCTCGGGCCGAGGAGCGTCCACCTCGCTGGATACTACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTGCAAGGCTCAGATGATGATGCTTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGATGGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAGTATGACTCAGAGGATGATGACTCAGAGAT-GATATACAATCAGCGTAGAGGCAAAAGTTC-AGTTG-TTATTGAGGAAATTCAAGA-GGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCG-AAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGGACTCCACCTGC-TGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATTCTCCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGGTGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAGGCTAGCAAAAAGAAAAAGAACAAGAAAAAGAAGACACAGGAGAAGAATGAAAGTGAGAACCAGACACCAAAAACACAGGAGAAGAATGCTAAAGGAAACCAGACGTCAAATACAGATCTTACGGGGTCAGAGAGCAAGAAGCAGCCGCTCCAAACACGCACTTTTGGCAATGGTATGATAATTGAGGAGATAGAAATGGGCAAA-CCAGATGGTAAAAAAGCCTCTCCTGGGAAAAAGGTTTCTGTTAAATACATTGGCAAGCTAAAGAATGGCACAATTTTTGACTCTACGGTTGGTCGAAGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATCAATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATCAATGGGGTATGGAAACAAAAGAATGGGGCCAATACCGCAGAACTCAACCCTCGTGTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGAAACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATACAGTTTCTAATACTCCGTATGAAAGTAGTGGATGGGTATTTCCGCTTTGAAGTTTCAACTGACTGGATTACGAGAAACCGCTGTAACTATTTCGTTTACTGCATTGAT]

[+] EMBL AK073743             [CCGCCGCATCGCTAAACCCCCCATTTTTAGGGTTTCTCGCCGCGACGCGGTGCGACGCCTCCTCTTCTTCTCCAACCCAGAGTTCCACACGCTCCAAATCCTTATTCGAATCCCCTCCACGCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCGTCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGCCTCGGCCGCCTGCGCCTCACCCAGGCGACGCTTGGAGGGGAGGCTGGGAAGGTGGAGAAGGGCGGCGGTGGGAAGAAGAACGTGGTGCAGTTACAGTGCACTGTGAAGAACAAGGATCCCGTGTTCCTGTGTGCCCTGGTGCCGGGGCAGTCGGAGACTTGCCACCTGGAGCTCGAGTTCGAGGAGAAGCACGTCACGTTCTCGGTGCTCGGGCCGAGGAGCGTCCACCTCGCTGGATACTACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTGCAAGGCTCAGATGATGATGCTTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGATGGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAGTATGACTCAGAGGATGATGACTCAGAGAT GATATACAATCAGCGTAGAGGCAAAAGTTC AGTTG TTATTGAGGAAATTCAAGA GGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCG AAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGGACTCCACCTGC TGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATTCTCCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGGTGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK103814             [ CGCCGCATCGCTAAA CCCCCATTTTTAGGGTTTCTCGCCGCGACGCGGTGCGACGCCTCCTCTTCTTCTCCAACCCAGAGTTCCACACGCTCCAAATCCTTATTCGAATCCCCTCCACGCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCGTCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGCCTCGGCCGCCTGCGCCTCACCCAGGCGACGCTTGGAGGGGAGGCTGGGAAGGTGGAGAAGGGCGGCGGTGGGAAGAAGAACGTGGTGCAGTTACAGTGCACTGTGAAGAACAAGGATCCCGTGTTCCTGTGTGCCCTGGTGCCGGGGCAGTCGGAGACTTGCCACCTGGAGCTCGAGTTCGAGGAGAAGCACGTCACGTTCTCGGTGCTCGGGCCGAGGAGCGTCCACCTCGCTGGATACTACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTGCAAGGCTCAGATGATGATGCTTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGATGGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAGTATGACTCAGAGGATGATGACTCAGAGAT GATATACAATCAGCGTAGAGGCAAAAGTTC AGTTG TTATTGAGGAAATTCAAGA GGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCG AAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGGACTCCACCTGC TGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATTCTCCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGGTGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAGGCTAGCAAAAAGAAAAAGAACAAGAAAAAGAAGACACAGGAGAAGAATGAAAGTGAGAACCAGACACCAAAAACACAGGAGAAGAATGCTAAAGGAAACCAGACGTCAAATACAGATCTTACGGGGTCAGAGAGCAAGAAGCAGCCGCTCCAAACACGCACTTTTGGCAATGGTATGATAATTGAGGAGATAGAAATGGGCAAA CCAGATGGTAAAAAAGCCTCTCCTGGGAAAAAGGTTTCTGTTAAATACATTGGCAAGCTAAAGAATGGCACAATTTTTGACTCTACGGTTGGTCGAAGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATCAATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATCAATGGGGTATGGAAACAAAAGAATGGGGCCAATACCGCAGAACTCAACCCTCGTGTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGAAACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATACAGTTTCTAATACTCCGTATGAAAGTAGTGGATGGGTATTTCCGCTTTGAAGTTTCAACTGACTGGATTACGAGAAACCGCTGTAACTATTTCGTTTACTGCATTGAT]
[+] EMBL CA753411             [                             GGGTTTCTCGCCGCGACGCGGTGCGACGCCTCCTCTTCTTCTCCAACCCAGAGTTCCACACGCTCCAAATCCTTATTCGAATCCCCTCCACGCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCGTCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGCCTCGGCCGCCTGCGCCTCACCCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF293073             [                                                                                                      TATTCGAATCCCCTCC CGCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCGTCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGCCTCGGCCGCCTGCGCCTCACCCAGGCGACGCTTGGAGGGGAGGCTGGGAAGGTGGAGAAGGGCGGCGGTGGGAAGAAGAACGTGGTGCAGTTACAGTGCACTGTGAAGAACAAGGATCCCGTGTTCCTGTGTGCCCTGGTGCCGGGGCAGTCGGAGACTCGCCACCTGGAGCTCGAGTTCGAGGAGAGGCACGTCACGTTCTCGGTGCTCGGGCCGAGGAGCGTCCACCTCGCTGGATACTACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTGCAAGGCTCAGATGATGATGCCTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGATGGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAGTATGACTCAGAGGATGATGACTCAGAGAT GATATACAATCAGCGTAGAGGCAAAAGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU166673             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGCTGGATACTACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTGCAAGGCTCAGATGATGATGCTTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGATGGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAGTATGACTCAGAGGATGATGACTCAGAGAT GATATACAATCAGCGTAGAGGCAAAAGTTC AGTTG TTATTGAGGAAATTCAAGA GGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCGAAAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGGACTCCACCTGCTTGAATCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF293074             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGATGATGATTCAGAGTATGACTCAGAGGATGATGACTCAGAGAT GATATACAATCAGCGTAGAGGCAAAAGTTC AGTTG TTATTGAGGAAATTCAAGA GGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCG AAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGGACTCCACCTGC TGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTG GGAAAAGGAGATCAAACAGGAAGATTCTCCAGCAGATCTTGTTGATGCAAAACAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI802020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTCAGAGATGGATATACAATCAGCGTAGA GCAAAAGTTCAAGTTGTTTATTGAGGAAATTCAAGAGGGATGACAAGCCTGCTGCTGGTGGAGCAC AAAGGGATC  AC AGAA CCAACCAGCG AAAATGGTGATGATTCTAAGCTGCAGCTTGTTGTTAGTACTCCACCTGC TGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGC ACCTAAAC AC AGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTC AAGAAAAATAAAAAGGCCAAGGCC AAAAGACTGCTGT GGCGGTGTGGAAAAGGAGATC AACAGGAAGATTCTCCAGCTGATCTTGTTGATCCAAAGC AAAGAAAAAC AGAACAAAAATACCTCAGAA CAGAAGCTGGTGCTCATCAGAATACCGATAAGAC AAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAGGCTA CAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI795564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGAGATAGAAAT GGCAAACCCAGATGGTAAAAAAGCCTCTCCTGGGAAAAAGGTTTCTGTTAAATACACTTGCAAGCTAAAGAATGGCACCATTTTTGACTCTACGGTTGGTCGAAGGGCATTTGATTTTAGACTC GTATTGGGGAGGTCATTAA GGCTGGGATATAGGCATCAATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATC ATGGGGTATGGAAACCAAAGAATGGGGCCCATACCGCAGAACTCAACCCTCGTGTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGAAACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGC AAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATAC GTTTCTAA       TATGAAAGTAGTGGATGGGTATTTCCGCTTTGAAGTTTCAAaaaaaa                                            ]


>consensus_12371#0 CCGCCGCATCGCTAAACCCCCCATTTTTAGGGTTTCTCGCCGCGACGCGGTGCGACGCCT CCTCTTCTTCTCCAACCCAGAGTTCCACACGCTCCAAATCCTTATTCGAATCCCCTCCAC GCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCG TCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGC CTCGGCCGCCTGCGCCTCACCCAGGCGACGCTTGGAGGGGAGGCTGGGAAGGTGGAGAAG GGCGGCGGTGGGAAGAAGAACGTGGTGCAGTTACAGTGCACTGTGAAGAACAAGGATCCC GTGTTCCTGTGTGCCCTGGTGCCGGGGCAGTCGGAGACTTGCCACCTGGAGCTCGAGTTC GAGGAGAAGCACGTCACGTTCTCGGTGCTCGGGCCGAGGAGCGTCCACCTCGCTGGATAC TACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTG CAAGGCTCAGATGATGATGCTTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGAT GGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAG TATGACTCAGAGGATGATGACTCAGAGATGATATACAATCAGCGTAGAGGCAAAAGTTCA GTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGA TCAAACAAGAAGCAAACCAGCGAAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGG ACTCCACCTGCTGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCT GAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATG AGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGG GAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAG ACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATTCTCCAGCTGATCTTGTT GATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGGTGCTCAT CAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAG GCTAGCAAAAAGAAAAAGAACAAGAAAAAGAAGACACAGGAGAAGAATGAAAGTGAGAAC CAGACACCAAAAACACAGGAGAAGAATGCTAAAGGAAACCAGACGTCAAATACAGATCTT ACGGGGTCAGAGAGCAAGAAGCAGCCGCTCCAAACACGCACTTTTGGCAATGGTATGATA ATTGAGGAGATAGAAATGGGCAAACCAGATGGTAAAAAAGCCTCTCCTGGGAAAAAGGTT TCTGTTAAATACATTGGCAAGCTAAAGAATGGCACAATTTTTGACTCTACGGTTGGTCGA AGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATC AATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATCAATGGGGTATGGA AACAAAAGAATGGGGCCAATACCGCAGAACTCAACCCTCGTGTTTGATGTGGAACTCGTG AATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGAAACTGAAGTGG TCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTTCATTTAGACAC AGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCA GAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATACAGTTTCTAATACTCCGT ATGAAAGTAGTGGATGGGTATTTCCGCTTTGAAGTTTCAACTGACTGGATTACGAGAAAC CGCTGTAACTATTTCGTTTACTGCATTGAT



consensusID : consensus_12371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence
                              [GGACGAGACAAGGGGATGATGACTCAGAGGATGATGACTCAGAGATGATATACAATCAGCGTAGAGGCAAAAGTTCAGTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCGAAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGTACTCCACCTGCTGAGTCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATCCACCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGATGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAGGCTAGCAAAAAAAAAAA]

[-] EMBL CA760220             [GGACGAGACAAGGGGATGATGACTCAGAGGATGATGACTCAGAGATGATATACAATCAGCGTAGAGGCAAAAGTTCAGTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCGAAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGTACTCCACCTGCTGAGTCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATCCACCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGATGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAGGCTAGCAAAAAAAAAAA]


>consensus_12371#1 GGACGAGACAAGGGGATGATGACTCAGAGGATGATGACTCAGAGATGATATACAATCAGC GTAGAGGCAAAAGTTCAGTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTG GTGGAGCACAAAAGGGATCAAACAAGAAGCAAACCAGCGAAAATGGTGATGATTCTAAAC TGCAGCTTGTTGTTAGTACTCCACCTGCTGAGTCTTTGGAAAGCGAAGATGAAGATGGCT TTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCA ACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACC ATCATGACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAA AGGCCAAGGCCAAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATC CACCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAG CAGAAGCTGATGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGG AAGACACTGCACAGGAGGCTAGCAAAAAAAAAAA



consensusID : consensus_12371#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence
                              [GGGTTGGTCGAAGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATCAATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATCAATGGGGTATGGAAACAAAAGAATGGGGCCAATACCGCAGAACTCAACCCTCGTGTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGAAACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATACAGTTTCTAATAAAAAAAAAAA]

[+] EMBL AU166672             [GGGTTGGTCGAAGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATCAATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATCAATGGGGTATGGAAACAAAAGAATGGGGCCAATACCGCAGAACTCAACCCTCGTGTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGAAACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATACAGTTTCTAATAAAAAAAAAAA]


>consensus_12371#2 GGGTTGGTCGAAGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGG ATATAGGCATCAATGGTATGCGTGTTGGGGACAAAAGGAGGCTCACGATCCCACCATCAA TGGGGTATGGAAACAAAAGAATGGGGCCAATACCGCAGAACTCAACCCTCGTGTTTGATG TGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAAGATGCTGA AACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTT CATTTAGACACAGACCATATGCCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTG GGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGCTCGATTTTCATACAGTTTC TAATAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12371#0      CCGCCGCATCGCTAAACCCCCCATTTTTAGGGTTTCTCGCCGCGACGCGGTGCGACGCCT 60
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      CCTCTTCTTCTCCAACCCAGAGTTCCACACGCTCCAAATCCTTATTCGAATCCCCTCCAC 120
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GCCGCCTCCCCCCAGCCGAGGCACGCGCCGGGACGCATCCGTCGAGCAGCGACCATGTCG 180
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      TCGTTTTGGGGCGCGGAGGTGAAGCCCGGGAAGCCCTACACCCACACCCACATCCCGCGC 240
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      CTCGGCCGCCTGCGCCTCACCCAGGCGACGCTTGGAGGGGAGGCTGGGAAGGTGGAGAAG 300
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GGCGGCGGTGGGAAGAAGAACGTGGTGCAGTTACAGTGCACTGTGAAGAACAAGGATCCC 360
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GTGTTCCTGTGTGCCCTGGTGCCGGGGCAGTCGGAGACTTGCCACCTGGAGCTCGAGTTC 420
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GAGGAGAAGCACGTCACGTTCTCGGTGCTCGGGCCGAGGAGCGTCCACCTCGCTGGATAC 480
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      TACATTGGTGATGTGTATGGGGAGGAGATAGATGACAGTGATACTGGTAGTGACTCTCTG 540
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      CAAGGCTCAGATGATGATGCTTTTCTGGATACTGATGATGATGACAGTGGCGCTGATGAT 600
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GGCACTGTTCTCATCCCATTATCTCCTGGAAACTCAGATGGTGAAGATGATGATTCAGAG 660
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      TATGACTCAGAGGATGATGACTCAGAGATGATATACAATCAGCGTAGAGGCAAAAGTTCA 720
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTGGTGGAGCACAAAAGGGA 780
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      TCAAACAAGAAGCAAACCAGCGAAAATGGTGATGATTCTAAACTGCAGCTTGTTGTTAGG 840
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      ACTCCACCTGCTGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCT 900
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAACAAGATG 960
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      AGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCTTCAGGG 1020
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAG 1080
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      ACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATTCTCCAGCTGATCTTGTT 1140
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGGTGCTCAT 1200
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      CAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCACAGGAG 1260
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      GCTAGCAAAAAGAAAAAGAACAAGAAAAAGAAGACACAGGAGAAGAATGAAAGTGAGAAC 1320
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      CAGACACCAAAAACACAGGAGAAGAATGCTAAAGGAAACCAGACGTCAAATACAGATCTT 1380
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      ACGGGGTCAGAGAGCAAGAAGCAGCCGCTCCAAACACGCACTTTTGGCAATGGTATGATA 1440
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      ATTGAGGAGATAGAAATGGGCAAACCAGATGGTAAAAAAGCCTCTCCTGGGAAAAAGGTT 1500
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      ------------------------------------------------------------
                                                                                   

consensus_12371#0      TCTGTTAAATACATTGGCAAGCTAAAGAATGGCACAATTTTTGACTCTACGGTTGGTCGA 1560
consensus_12371#2      -------------------------------------------------GGGTTGGTCGA 11
consensus_12371#1      -------------------------------------------------GGACGAGACAA 11
                                                                         *    * * *

consensus_12371#0      AGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATC 1620
consensus_12371#2      AGGGCATTTGATTTTAGACTCGGTATTGGGGAGGTCATTAAGGGCTGGGATATAGGCATC 71
consensus_12371#1      GGGGATGATGACTCAGAGGATGATGACTCAGAGATGATATACAATCAGCGTAGAGGCAAA 71
                        ***    *** *        * *      *** * **  *      *  ** *****  

consensus_12371#0      AATGGTATGCGTGTTGGGGACAAA-AGGAGGCTCACGATCCCACCATCAATGGGGTATGG 1679
consensus_12371#2      AATGGTATGCGTGTTGGGGACAAA-AGGAGGCTCACGATCCCACCATCAATGGGGTATGG 130
consensus_12371#1      AGTTCAGTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTGGTGGAGCACAA 131
                       * *    *   * *** *** *   * **** * ** * **  *      *** * *   

consensus_12371#0      AAACAA------AAGAATGGGGCCA------------ATACCGCAGAACTCAACCCTCGT 1721
consensus_12371#2      AAACAA------AAGAATGGGGCCA------------ATACCGCAGAACTCAACCCTCGT 172
consensus_12371#1      AAGGGATCAAACAAGAAGCAAACCAGCGAAAATGGTGATGATTCTAAACTGCAGCTTGTT 191
                       **   *      *****     ***            **    *  ****  * * *  *

consensus_12371#0      GTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAA 1781
consensus_12371#2      GTTTGATGTGGAACTCGTGAATGTAAAGTGAGGCGAGAGCAAGAGATCTTGTAGCTTCAA 232
consensus_12371#1      GTTAGTACTCCACCTGCTGAGTCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCA 251
                       *** *   *  * **  *** * *   *  **   ***  ****   ***     *   *

consensus_12371#0      GATGCTGAAACT--GAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTT-CAGC 1838
consensus_12371#2      GATGCTGAAACT--GAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTT-CAGC 289
consensus_12371#1      TTTTCTGAATCAAAGAAAAGAACTGATGGTAGTTCTAAGAAAAAAGGCAACCTAAACAAC 311
                         * ***** *   ***  *  **      **** *     * *      **    ** *

consensus_12371#0      AAAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTT--GTGA--ACTGTAGCCAT 1894
consensus_12371#2      AAAGCTATCTTCATTTAGACACAGACCATATGCCTTATTTT--GTGA--ACTGTAGCCAT 345
consensus_12371#1      AAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCATGACCCT 371
                       **    * *       * *   * *  * * **  *  * *  * **  *   *  ** *

consensus_12371#0      GTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCT---TCAGTGCT 1951
consensus_12371#2      GTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCT---TCAGTGCT 402
consensus_12371#1      TCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCC 431
                         ***   * *   **  * * *  *  *  *****     *  *        **  ** 

consensus_12371#0      C----GATTTTCATA--CAGTTTCTAATACTCCGTATGAAAGTAGTGGATGGGTATTTCC 2005
consensus_12371#2      C----GATTTTCATA--CAGTTTCTAATAAAAAAAAAAA--------------------- 435
consensus_12371#1      AAAAAGACTGCTGTGGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATCCACCAGCTGAT 491
                            ** *    *   * ** *  ** *         *                     

consensus_12371#0      GCTTTGAAGTTTCAACTGACTGGATTACGAGAAACCGCTGTAACTATTTCGTTTACTGCA 2065
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      CTTGTTGATGCAAAACAAAAGAAAAACAAGAACAAAAATACCTCAGAAGCAGAAGCTGAT 551
                                                                                   

consensus_12371#0      TTGAT------------------------------------------------------- 2070
consensus_12371#2      ------------------------------------------------------------
consensus_12371#1      GCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGACACTGCA 611
                                                                                   

consensus_12371#0      -----------------------
consensus_12371#2      -----------------------
consensus_12371#1      CAGGAGGCTAGCAAAAAAAAAAA 634
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)