These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1252 fasta sequence [AGCTCCGCAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA-CGGTGG-CAGAGCGTGAGGC-TTTTGCTTATG-CAGCAAAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA-ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA-TTTTAAAGACCTTATATCCA-ACTTATACTTATCCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCA-ACAGTGCATTTCCGTAAAAACAAAACAAAACAAAAACAAAAACCACAAGTGTATCGGTGTAAAAAAATTCCTGAATCTTGTGCATTGACAATGCAGATATATATAGTTGACAGTTGTTGGCTCAAAAAAAAAA] [+] EMBL CA758807 [AGCTCCGCAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCANANACTGGGCT ] [+] EMBL CF328354 [ CAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGT ] [+] EMBL CB647560 [ AGCGAAGACGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCAAAAACTGGGCTGGACATTGTAACTATTT ] [+] EMBL AK102436 [ AAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCAAAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGT ] [-] EMBL CB647561 [ ATAGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAAGCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGATAAGGCTTTCACTGAAGACAGTTGGTCAGATGAGGAATTATGCAGAAAGAATCAGGATTGGTATTACCTTTCGAAAA CGGTGG CAGAGCGTGAGGC TTTTGCTTATG CAGCAAAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGA ] [+] EMBL BM421891 [ AGAAAGAATCAGGATTGGTATTACCTTTCGAAAACCAGTGGCCAGAGCGTGAGGCTTTTTGCTTATGCCAGC AAAACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCC ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCC AAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTATTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTAC AAGCATTTGGCATCCTTGATTGAGGATCC AACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCCATAAAGAATCGTTATTAAAAaaa a ] [+] EMBL BI800886 [ GTA TACC TTCGAAAA C GT G CAGAGCGTGA GC TTTTGCTTATG CA C AAACT GGCTGGACA TGTAACTA TTGCCCATCATTGGTGATTGGACCCTTAATGC ATCTACAGT AACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCC ATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTACACTTATCCC AAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTAC AAGCATTTGGCATCCTTGATTGAGGATCC AACTGTGAGAACTTCAGTGTCTGTT AACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCA Aaaa ] [-] EMBL CF328355 [ TATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCA ATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACA TTTTAAAGACCTTATATCCA ACTTATACTTATCCCAAAAACTTTGTGGATGCGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCCCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCA CCAGTGCATTTCCGTAAAAACAAAACAAAACAAAAACAAAAACCACAAGTGTATCGGTGTAAAAAAA ] [+] EMBL BI811667 [ TCTTGATGTT CCACATGCTCTCCTTTT GCGTATGAAAATCCAGCATCCGGACGATACATCTCAAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACACTTTTAAAGACCTTATATCCACACTTATACTTATCCC AAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTATTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCC AACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTC ATAAAGAATCGTTATTAAAACCACCCAGTGCATTTCCGTAAAAAC AAC AC AC AAAACCACAAGTGTATCGGTGTATCCTGATTCCTGAATCTTGTGCATTGACAATGCAGATATATATAGTTGACAGTTGTTGGCTCAAAAAAAAAA] consensusID : consensus_12373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [AGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTTAACATTTGACAAGAACATATATTTGTTGTCAGTTGGGTTGATGTCGAACAATGGAAAATAGGGTGATTTTTTTGTGTTGAATCAAGGGGCCATCGCTGGTTATGGTTTTAACATGGTGAAATTGGTGATATTAGTATAAAGCAGTTGATGTTAGATCAGAAGTGAAGTCACATATTTCAGGATATCTGTGTTCCCCATAANATTAATGATTACAGACNATTCATTCTGATTTATGCTTTGCACCATCGTTGACTCCTGGCTCTATGATCTTGTATTC] [+] EMBL CA754187 [AGGAAGTCGGAAGTCCGAAGGCATGGCAGCGGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCACGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGGTGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCTCAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGTCTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTTAACATTTGACAAGAACATATATTTGTTGTCAGTTGGGTTGATGTCGAACAATGGAAAATAGGGTGATTTTTTTGTGTTGAATCAAGGGGCCATCGCTGGTTATGGTTTTAACATGGTGAAATTGGTGATATTAGTATAAAGCAGTTGATGTTAGATCAGAAGTGAAGTCACATATTTCAGGATATCTGTGTTCCCCATAANATTAATGATTACAGACNATTCATTCTGATTTATGCTTTGCACCATCGTTGACTCCTGGCTCTATGATCTTGTATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12373#0 AGCTCCGCAGCGAAGAGGAGTGTGGGGTTGAGGAAGTCGGAAGTCCGAAGGCATGGCAGC 60 consensus_12373#1 ------------------------------AGGAAGTCGGAAGTCCGAAGGCATGGCAGC 30 ****************************** consensus_12373#0 GGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCA 120 consensus_12373#1 GGCGGCGGCGAGGCAGACGGTGTGCGTCACCGGCGCCGGGGGGTTCATGGCCTCGTCGCA 90 ************************************************************ consensus_12373#0 CGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGG 180 consensus_12373#1 CGTCGAGCTGCTCCTCTCCCGGGGGAACTACGCGGTCCGCGGCACCGTGCGGGATCCAGG 150 ************************************************************ consensus_12373#0 TGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCT 240 consensus_12373#1 TGATGCCAAGAATGATCATCTCAGGGCGCTACAAGGTGCCGAGGAGAGGTTGCAGCTGCT 210 ************************************************************ consensus_12373#0 CAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGT 300 consensus_12373#1 CAAGGCTGATCTGTTGGACTATGACAGTGTAGCTTCAGCGGTTGCCGGCTGTGAGGGCGT 270 ************************************************************ consensus_12373#0 CTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTAGAGGTCAT 360 consensus_12373#1 CTTCCATGTCGCCAGCCCTGTACCCTCGGGCCGATCCACCAACCCTGAGGTTAACATTTG 330 *************************************************** * * consensus_12373#0 AGCTCCTGCTGTAACAGGCACACTTAATGTGTTGAAGGCCTGCCATGAGGCAAAAGTTAA 420 consensus_12373#1 ACAAGAACATATATTTGTTGT--CAGTTGGGTTGATGTCGAACAATGGAAAATAGGGTGA 388 * * ** * ** ***** * * * *** * * * * * consensus_12373#0 GCGAGTTGTCATGGTGTCTTCCATTGCTGCCGTGTTCAGTAATCCTAACTGGCCAAAGGA 480 consensus_12373#1 TT---TTTTTGTGTTGAATCAAGGGGCCATCGCTGGTTATGGTTTTAACATGGTGAAATT 445 ** * ** ** * ** ** * * **** * ** consensus_12373#0 TAAGGCTTTCACTGAAGACAGTTG--GTCAGATGAGGAATTATGCAGAAAGAATCAGGAT 538 consensus_12373#1 GGTGATATTAGTATAAAGCAGTTGATGTTAGATCAGAAGTGAAGTCACATATTTCAGGAT 505 * ** ** ****** ** **** ** * * * * * ******* consensus_12373#0 --TGGTATTACCTTTCGAA--AACGGTGGCAGAGCGTGAGGCTTTTGCTTATGCAGCAAA 594 consensus_12373#1 ATCTGTGTTCCCCATAANATTAATGATTACAGACNATTCA-TTCTGATTTATGCTTTGCA 564 ** ** ** * * ** * * **** * * * ****** * consensus_12373#0 AACTGGGCTGGACATTGTAACTATTTGCCCATCATTGGTGATTGGACCCTTAATGCAATC 654 consensus_12373#1 C-CATCGTTGACTCCTGGCTCTATGATCTTGTATTC------------------------ 599 * * ** ** **** * * * consensus_12373#0 TACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGT 714 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 CGAAAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCAATGCTCTCCTTTTGGC 774 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 GTATGAAAATCCAGCATCCGGACGATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGA 834 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 TATGATAAACATTTTAAAGACCTTATATCCAACTTATACTTATCCCAAAAACTTTGTGGA 894 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 TGTGGAAGAGAACACCATATACAGTTTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAG 954 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 GCCTATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGA 1014 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 TTGAGGATCCAAACTGTGAGAACTTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATC 1074 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 TGTGTTGAGATCAACCGGGTCAATAAAGAATCGTTATTAAAACCAACAGTGCATTTCCGT 1134 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 AAAAACAAAACAAAACAAAAACAAAAACCACAAGTGTATCGGTGTAAAAAAATTCCTGAA 1194 consensus_12373#1 ------------------------------------------------------------ consensus_12373#0 TCTTGTGCATTGACAATGCAGATATATATAGTTGACAGTTGTTGGCTCAAAAAAAAAA 1252 consensus_12373#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||