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Oryza sativa
cluster # 12378 cluster # 12378       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12378#0 length = 801 sequences # 7  
consensus_12378#1 length = 767 sequences # 2  
consensus_12378#2 length = 672 sequences # 1  

consensusID : consensus_12378#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 801
fasta sequence
                              [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT-CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]

[+] EMBL CA759917             [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]
[+] EMBL CA759912             [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]
[+] EMBL CA759913             [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]
[+] EMBL CA759914             [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]
[+] EMBL CA759915             [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]
[+] EMBL CA759916             [TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATTTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCGGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCAT CCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGAGAGGTAACCGATGGAGGA]
[-] EMBL AU056133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTGCCGGTCATNCCATGGCTCTACGTGGTCAACCTGATTNTAGATCTCATCAATGACCTCNTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAGAGA                  ]


>consensus_12378#0 TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATATT TCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCCG GTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTCA CCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAGGTTATGGGTTTACCATCCCATCA CCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACTCCA CAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTAAGG CGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAA CTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTC TACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTA GAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCAC ATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCG GGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGA TTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGAGAG AGAGAGGTAACCGATGGAGGA



consensusID : consensus_12378#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 767
fasta sequence
                              [AACCAACAGGTGAGTGATTCAACAAACACTAATTGCATTTATGTTCAGAAAATACTATGTCAATGATGTATGCCCACGGATGTGCTTGGGTAACTAAAGGACACTGTAACAGGAACTTTACAATACTATTCTATTTAAAGGCAGAAATGAAATGAAGTTCACAAGATATACCTGCCCAAGTAGAAGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGATCCAGGAGAAAACTCCTCATCATCTTTAATGTAGGGTTCATACCAACTCCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATAGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGACCCTGTATGGAGA]

[-] EMBL CB628735             [AACCAACAGGTGAGTGATTCAACAAACACTAATTGCATTTATGTTCAGAAAATACTATGTCAATGATGTATGCCCACGGATGTGCTTGGGTAACTAAAGGACACTGTAACAGGAACTTTACAATACTATTCTATTTAAAGGCAGAAATGAAATGAAGTTCACAAGATATACCTGCCCAAGTAGAAGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGATCCAGGAGAAAACTCCTCATCATCTTTAATGTAGGGTTCATACCAACTCCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATAGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGACCCTGTATGGAGA]
[-] EMBL CF277104             [                                                                                                                                                                                                                                                                ATGTAGGGTTCATACCAACTCCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGCGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGAT                                                 ]


>consensus_12378#1 AACCAACAGGTGAGTGATTCAACAAACACTAATTGCATTTATGTTCAGAAAATACTATGT CAATGATGTATGCCCACGGATGTGCTTGGGTAACTAAAGGACACTGTAACAGGAACTTTA CAATACTATTCTATTTAAAGGCAGAAATGAAATGAAGTTCACAAGATATACCTGCCCAAG TAGAAGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGATCCAGGAGAAAA CTCCTCATCATCTTTAATGTAGGGTTCATACCAACTCCACAACGTCTTTGGTTCCGCAAC ATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAG GCCGTGCATCTGCTTAACCGTGAGCTTCATAGTGAAGAACTTGTAGAGGAGGCAGAAGGC GCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACGTGGTCAACCTGATTGTA GATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGA GGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGCACATCGATTGGCCTCCCTGATGA CTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGC GCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTGGATTG GGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGACCCTGTATGGAGA



consensusID : consensus_12378#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [GAACCAAGGCGACTAGAGTCCCCTGTTATTCCTGACTGCTTTGTTGGGAGCTTCATCTTCTCAAGATGGCCAGTGACCTGTCTCAAGATCGGAAGAGGCACTCGTGGAAGAAGACTGTCAAAGTAGTACTGCCCAAGTAGAAGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGATCCAGGAGAAAACTCCTCATCATCTTTAATGTAGGGTTCATACCAACTCCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGAACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTG]

[-] EMBL CF326731             [GAACCAAGGCGACTAGAGTCCCCTGTTATTCCTGACTGCTTTGTTGGGAGCTTCATCTTCTCAAGATGGCCAGTGACCTGTCTCAAGATCGGAAGAGGCACTCGTGGAAGAAGACTGTCAAAGTAGTACTGCCCAAGTAGAAGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGATCCAGGAGAAAACTCCTCATCATCTTTAATGTAGGGTTCATACCAACTCCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGAACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGGGGATTCGTTTTG]


>consensus_12378#2 GAACCAAGGCGACTAGAGTCCCCTGTTATTCCTGACTGCTTTGTTGGGAGCTTCATCTTC TCAAGATGGCCAGTGACCTGTCTCAAGATCGGAAGAGGCACTCGTGGAAGAAGACTGTCA AAGTAGTACTGCCCAAGTAGAAGATCTCGCACATAAACACCCATAGTAGTCATTTTACCA TTAGATCCAGGAGAAAACTCCTCATCATCTTTAATGTAGGGTTCATACCAACTCCACAAC GTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTAAGGCGAG TCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAAGAACTTG TAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGGCTCTACG TGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCTGTAGAGC TCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAGAACATCG ATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCACCGGGAT GCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACGAGATTGG GGATTCGTTTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12378#1      AACCAACAGGTGAGTGATTCAACAAACACTAATTGCATTTATGTTCAGAA-AATAC-TAT 58
consensus_12378#2      ----------------------------------GAACCAAGGCGACTAG-AGTCC-CCT 24
consensus_12378#0      -TTTTTTTTTTTTAAAAAAGAACAAGTGTTGACAATCGTAATATACATAACAATAAATAT 59
                                                               *       *  * *     *

consensus_12378#1      GTCAATGATGTATGCCCACGGATGTGCTTGGGTAACTAAAGGACACTGTAA-------CA 111
consensus_12378#2      GTTATTCCTGACTGCTTTGTTGGGAGCTTCATCTTCTCAAGA------TGG-------CC 71
consensus_12378#0      TTCCCCTCTAGAAATTACAACAAAAAATTTCACATCTAACAATCCTTGTAATTTATCTCC 119
                        *      *                  **      ** *         *         * 

consensus_12378#1      GGAACTTTA--CAATACTATTCTATTTAAAGGCAGAAATGAAATGAAGTTCACAAGATAT 169
consensus_12378#2      AGTGACCTG--TCTCAAGATCGGA---AGAGGCACTCGTGGAAGAAGACTGTCAAAGTAG 126
consensus_12378#0      GGTTTTTAGGTCTTTAGCTTTGATTCCTTGAATTTCCAAGCATGTAATCTTAGATAGTTC 179
                        *             *   *                   * *   *   *   *   *  

consensus_12378#1      ACCTGCCCAAGTAGA-AGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGA 228
consensus_12378#2      TACTGCCCAAGTAGA-AGATCTCGCACATAAACACCCATAGTAGTCATTTTACCATTAGA 185
consensus_12378#0      ACCTTCTTTTGCAAATGGGTTTTACACACAACCTCCAG--GTTATGGGTTTACCATCCCA 237
                         ** *    * * *  * * *  **** ** * **    **  *   ********   *

consensus_12378#1      TC--CAGGAGAAAACT------CCTCATCATCTTTAAT----GTAGGGTTCATACCAACT 276
consensus_12378#2      TC--CAGGAGAAAACT------CCTCATCATCTTTAAT----GTAGGGTTCATACCAACT 233
consensus_12378#0      TCACCCGTTGACACCTACTCTCTCTCATCATCTTTAATTAATGTAGGGTTCGTACCAACT 297
                       **  * *  ** * **       ***************    ********* ********

consensus_12378#1      CCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTA 336
consensus_12378#2      CCACAACGTCTTTGGTTCCGCAACATATCGCAGGTAAAGAAATCCAACAGCTCTGATGTA 293
consensus_12378#0      CCACAACGTCTTTGGTTCCGTCACATATCGCAGGTAAACAAATCCAACAGCTCTGATGTA 357
                       ********************  **************** *********************

consensus_12378#1      AGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATAGTGAA 396
consensus_12378#2      AGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAA 353
consensus_12378#0      AGGCGAGTCAGGGTGCTTCAGCAGGCCGTGCATCTGCTTAACCGTGAGCTTCATGGTGAA 417
                       ****************************************************** *****

consensus_12378#1      GAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGG 456
consensus_12378#2      GAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGG 413
consensus_12378#0      GAACTTGTAGAGGAGGCAGAAGGCGCTGGAGGGCCCGCGGCAGTTGCCGGTCATCCATGG 477
                       ************************************************************

consensus_12378#1      CTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCT 516
consensus_12378#2      CTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCT 473
consensus_12378#0      CTCTACGTGGTCAACCTGATTGTAGATCTCATCAATGACCTCGTGGTAAGTCTTCAGCCT 537
                       ************************************************************

consensus_12378#1      GTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAG 576
consensus_12378#2      GTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAG 533
consensus_12378#0      GTAGAGCTCCTTGAAGTAGTCCGAGGAGAGGATGTTCACTGACAAAACCTTCTCCATGAG 597
                       ************************************************************

consensus_12378#1      CACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCA 636
consensus_12378#2      AACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCA 593
consensus_12378#0      CACATCGATTGGCCTCCCTGATGACTGTATCTCCATTTCCCCTCCTCTCTTTTCTTCTCA 657
                        ***********************************************************

consensus_12378#1      CCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACG 696
consensus_12378#2      CCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACG 653
consensus_12378#0      CCGGGATGCGAAGCGGCGGGCGGCGCACGGGGGAGGCCACGGCGAGCGGCGGCGCGGACG 717
                       ************************************************************

consensus_12378#1      AGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGACC 756
consensus_12378#2      AGATTGGGGATTCGTTTTG----------------------------------------- 672
consensus_12378#0      AGATTGGGGATTCGTTTTGGATTGGGGATTAGGGCGACGAGAAGAGGAGAGAGAGAGAGA 777
                       *******************                                         

consensus_12378#1      CTGTATGGAGA------------- 767
consensus_12378#2      ------------------------
consensus_12378#0      GAGAGAGAGGTAACCGATGGAGGA 801
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)