cluster # 12380

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Oryza sativa
cluster # 12380 cluster # 12380 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12380#0 length = 2581 sequences # 9

consensus_12380#1 length = 403 sequences # 1

consensusID : consensus_12380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2581
fasta sequence

                              [AGCTAAAGCTGCCACCTAATGATGCATATTTCAAGCTACGGCATACACTGGAGGCGATCAATGATCTCATCTCGTCTTGCCTCTACCACAGTAGGTGGCACTCAACTGGTTGATCCTGCTGCTGGAAATGTTTGTTTTGCAAGTGGTTCTGCAGGCTGGTCTTTTACCTTGCAATCTTTTGCTCATCTTTATTTAAAGATCCATGGGATTCAATTTGATCATGAGAAATTTGCATCGCGTCTATGGGGAGACCTATATTATCACCCTGACACTAGAACCTTCAAAAAGAAGCCTCCAAAGGAAGGAGCTAATAGATCATTTGTTGAGTTTGTCCTTGAACCTTTGTACAAAATATATAGTCAGGTTGTTGGGGAGTCAAAGGGTAAGGTTGAAGCAACTCTTTCTGAGCTGGGTGTGACGCTGAGCAATGCAGCTTATAAGCTTAATGTTAGGCCTTTGCTGAGATTAGCTTGTCGCTCAATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAACACATACCCTCTGTCAAGGATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCACAAGATTCCACTATTGTGGATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTTAATGTTACAAAGTTGTATCCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTTTATAGTGGCACAATACAGACTGGGCAAACTGTGCGTGTTCTTGGAGAANGCTATTCTCCTGATGATGAAGAAGATATGACTGTGAAAGAGGTTACTAAGTTGTGGGTGTATCAGGCACGGTACCGTGTTCCAATTAGTAAAGCCCCTGCTGGTTCTTGGGTTCTTATTGAAGGTGTAGATGCATCAATTATGAAAACTGCAACTATATGTCCTATGAAGATGGATGAAGATGTCTACATATTTAGACCTCTACGTTTCAATACTCTACCTGTCGTGAAAATAGCAGCTGAGCCTCTAAACCCAAGTGAGCTCCCTAAGATGGTGGAAGGTCTTCGTAAAATCAGTAAGAGTTATCCTCTTGCTGTTACTAAGGTGGAAGAGTCTGGAGAACACACTATCCTTGGGACTGGTGAGCTTTATCTAGATTCTATAATGAAGGACCTCAGAGAGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTCGTGACATTTTGTGAAACAGTTGTTGATACTTCTTCGATGAAATGCTTTGCTGAAACACCCAACAAGAGGAACAAAATTACCATGGTTGCTGAACCATTGGAAAAGGGCTTGGCTGAAGATATTGAGAACGGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGACTTCTTTCGTCAACGCTACCAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGGCCTGAAAAGCAGGGTCCTAACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAAAACTTGCTCAATGCAGTCAAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAAGGTCCGCTGTGTGATGAACCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATAGCTCCTGAACCGTTGCACCG-TGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTTTACTCAGCGTTCCTAATGGCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATCCAAACACCAATTGACTGTGTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCATGTAACAGCGGATGTACCCAAACCAGGAACTCCAATCTATGTTGTTAAGGCATTTTTACCTGTTATAGAGTCATTTGGATTTGAGACCGACCTGAGGTACCATACACAGGGACAGGCCTTTTGCCTATCAGTGTTCGATCACTGGGCTATTGTTCCTGGTGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTGGAACCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAGGGCATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCCATGATGAACGAGCTGGCGCANAGGCTGCTGATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGGTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACA-CTGGGAACTGGAATCAACCTTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTGCGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGG-TTTTGGTAGACGGGAGTCCCATCTA-TTCATCTTTATGTATG-T-CTCTT-CTG-AACA-TTTCATCATCTAACC-TATCAGTTTTAGTTAGCCA-TTCGGAACTGGAGATAAGTTTTGAGGGGCGATGATATCATCTAATCTGGATTGCAGCATGGATGGTGTAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACAAGTAGCATTCTACNCCCTTTGAGTTTTTGAAGGAAAAAAAAAA]

[+] EMBL CB643492             [AGCTAAAGCTGCCACCTAATGATGCATATTTCAAGCTACGGCATACACTGGAGGCGATCAATGATCTCATCTCGTCTTGCCTCTACCACAGTAGGTGGCACTCAACTGGTTGATCCTGCTGCTGGAAATGTTTGTTTTGCAAGTGGTTCTGCAGGCTGGTCTTTTACCTTGCAATCTTTTGCTCATCTTTATTTAAAGATCCATGGGATTCAATTTGATCATGAGAAATTTGCATCGCGTCTATGGGGAGACCTATATTATCACCCTGACACTAGAACCTTCAAAAAGAAGCCTCCAAAGGAAGGAGCTAATAGATCATTTGTTGAGTTTGTCCTTGAACCTTTGTACAAAATATATAGTCAGGTTGTTGGGGAGTCAAAGGGTAAGGTTGAAGCAACTCTTTCTGAGCTGGGTGTGACGCTGAGCAATGCAGCTTATAAGCTTAATGTTAGGCCTTTGCTGAGATTAGCTTGTCGCTCAATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAACACATACCCTCTGTCAAGGATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCACAAGATTCCACTATTGTGGATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTTAATGTTACAAAGTTGTATCCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTTTATAGTGGCACAATACAGACTGGGCAAACTGTGCGTGTTCTTGGAGAANGCTATTCTCCTGATGATGAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK058674             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTCGCTCAATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAACACATACCCTCTGTCAAGGATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCACAAGATTCCACTATTGTGGATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTTAATGTTACAAAGTTGTATCCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTTTATAGTGGCACAATACAGACTGGGCAAACTGTGCGTGTTCTTGGAGAAGGCTATTCTCCTGATGATGAAGAAGATATGACTGTGAAAGAGGTTACTAAGTTGTGGGTGTATCAGGCACGGTACCGTGTTCCAATTAGTAAAGCCCCTGCTGGTTCTTGGGTTCTTATTGAAGGTGTAGATGCATCAATTATGAAAACTGCAACTATATGTCCTATGAAGATGGATGAAGATGTCTACATATTTAGACCTCTACGTTTCAATACTCTACCTGTCGTGAAAATAGCAGCTGAGCCTCTAAACCCAAGTGAGCTCCCTAAGATGGTGGAAGGTCTTCGTAAAATCAGTAAGAGTTATCCTCTTGCTGTTACTAAGGTGGAAGAGTCTGGAGAACACACTATCCTTGGGACTGGTGAGCTTTATCTAGATTCTATAATGAAGGACCTCAGAGAGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTCGTGACATTTTGTGAAACAGTTGTTGATACTTCTTCGATGAAATGCTTTGCTGAAACACCCAACAAGAGGAACAAAATTACCATGGTTGCTGAACCATTGGAAAAGGGCTTGGCTGAAGATATTGAGAACGGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGACTTCTTTCGTCAACGCTACCAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGGCCTGAAAAGCAGGGTCCTAACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAAAACTTGCTCAATGCAGTCAAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAAGGTCCGCTGTGTGATGAACCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATAGCTCCTGAACCGTTGCACCG TGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTTTACTCAGCGTTCCTAATGGCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATCCAAACACCAATTGACTGTGTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCATGTAACAGCGGATGTACCCAAACCAGGAACTCCAATCTATGTTGTTAAGGCATTTTTACCTGTTATAGAGTCATTTGGATTTGAGACCGACCTGAGGTACCATACACAGGGACAGGCCTTTTGCCTATCAGTGTTCGATCACTGGGCTATTGTTCCTGGTGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTGGAACCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAGGGCATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF323854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACCATTGGAAAAGGGCTTGGCTGAAGATATTGAGAACGGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGACTTCTTTCGTCAACGCTACCAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGGCCTGAAAAGCAGGGTCCTAACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAAAACTTGCTCAATGCAGTCAAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAAGGTCCGCTGTGTGATGAACCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATAGCTCCTGAACCGTTGCACCGNTGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTTTACTCAGCGTTCCTAATGGCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATCCAAACACCAATTGACTGTGTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCATGTAACAGCGGATGTACCCAAACCAGGAACTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC23321             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTGGAACCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAGGGCATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCCATGATGAACGAGCTGGCGCANAGGCTGCTGATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGGTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACA CTGGGAACTGGAATCAACCTTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTGCGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGGTTTTTGGTAGACGGGAGNCCCATCTATTTCATC TTATGAATG T CNCTTCCTGTAACA                                                                                                                                                                                                          ]
[+] EMBL OSC23331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTGGAACCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAGGGCATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCCATGATGAACGAGCTGGCGCANAGGCTGCTGATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGGTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACA CTGGGAACTGGAATCAACCTTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTGCGNTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGG TTTTGGTAGACGGGAGGCCCATCTA TTCATCTTTATGTATG T CTCTT CTG NACA TTTCATCATCTAACC TATCA                                                                                                                                                                                    ]
[+] EMBL BM038363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATT GTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACACCTGGGAACTGGAATCAACCGTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTGCGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGG TTTTGGTAGACGGGAGTCCCATCTATTTCATCTTTATGTATG TACTCTTCCTGTAACATTTTCATCATCTAACCTTATCAGTTTTAGTTAGCCACTTCGGAACTGGAGATAAGTTTTGAGGGGCGATGATATCATCTAATCTGGATTGCAGCATGGATGGTGTAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACAAGTAGCATTCTACNCCCTTTGAGTTTTTGAAGGAAAAAAAAAA]
[+] EMBL AK102908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGGTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACA CTGGGAACTGGAATCAACCTTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTGCGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGG TTTTGGTAGACGGGAGTCCCATCTATTTCATCTTTATGTATGAT CTCTTCCTGTAACATTTTCATCATCTAACCTTATCAGTTTTAGTTAGCCA TTCGGAACTGGAGATAAGTTTTGAGGGGCGATGATATCATCTAATCTGGATTGCAGCATGGATGGTGTAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACAA                                          ]
[-] EMBL CB627052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGGTTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACA CTGGGAACTGGAATCAACCGTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTGCGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGG TTTTGGTAGACGGGAGTCCCATCTATTTCATCTTTATGTATG TACTCTTCCTGTAACATTTTCATCATCTAACCTTATCAGTTTTAGTTAGCCA TTCGGAACTGGAGATAAGTTTTGAGGGGCGATGATATCATTTAATCTGGATTGCAGCATGGATGGTGTAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACAAGTAGCATTCTcc                              ]
[+] EMBL BI799699             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTCATCATCTAACCTTATCAGTTTTAGTTAGCCA TTCGGAACTGGAGATAAGTTTTGAGGGGCGAaaaaaaaaa                                                                                                                             ]




>consensus_12380#0
AGCTAAAGCTGCCACCTAATGATGCATATTTCAAGCTACGGCATACACTGGAGGCGATCA
ATGATCTCATCTCGTCTTGCCTCTACCACAGTAGGTGGCACTCAACTGGTTGATCCTGCT
GCTGGAAATGTTTGTTTTGCAAGTGGTTCTGCAGGCTGGTCTTTTACCTTGCAATCTTTT
GCTCATCTTTATTTAAAGATCCATGGGATTCAATTTGATCATGAGAAATTTGCATCGCGT
CTATGGGGAGACCTATATTATCACCCTGACACTAGAACCTTCAAAAAGAAGCCTCCAAAG
GAAGGAGCTAATAGATCATTTGTTGAGTTTGTCCTTGAACCTTTGTACAAAATATATAGT
CAGGTTGTTGGGGAGTCAAAGGGTAAGGTTGAAGCAACTCTTTCTGAGCTGGGTGTGACG
CTGAGCAATGCAGCTTATAAGCTTAATGTTAGGCCTTTGCTGAGATTAGCTTGTCGCTCA
ATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAACACATACCCTCTGTCAAG
GATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCACAAGATTCCACTATTGTG
GATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTTAATGTTACAAAGTTGTAT
CCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTTTATAGTGGCACAATACAG
ACTGGGCAAACTGTGCGTGTTCTTGGAGAANGCTATTCTCCTGATGATGAAGAAGATATG
ACTGTGAAAGAGGTTACTAAGTTGTGGGTGTATCAGGCACGGTACCGTGTTCCAATTAGT
AAAGCCCCTGCTGGTTCTTGGGTTCTTATTGAAGGTGTAGATGCATCAATTATGAAAACT
GCAACTATATGTCCTATGAAGATGGATGAAGATGTCTACATATTTAGACCTCTACGTTTC
AATACTCTACCTGTCGTGAAAATAGCAGCTGAGCCTCTAAACCCAAGTGAGCTCCCTAAG
ATGGTGGAAGGTCTTCGTAAAATCAGTAAGAGTTATCCTCTTGCTGTTACTAAGGTGGAA
GAGTCTGGAGAACACACTATCCTTGGGACTGGTGAGCTTTATCTAGATTCTATAATGAAG
GACCTCAGAGAGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTCGTGACATTT
TGTGAAACAGTTGTTGATACTTCTTCGATGAAATGCTTTGCTGAAACACCCAACAAGAGG
AACAAAATTACCATGGTTGCTGAACCATTGGAAAAGGGCTTGGCTGAAGATATTGAGAAC
GGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGACTTCTTTCGTCAACGCTAC
CAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGGCCTGAAAAGCAGGGTCCT
AACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAAAACTTGCTCAATGCAGTC
AAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAAGGTCCGCTGTGTGATGAA
CCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATAGCTCCTGAACCGTTGCAC
CGTGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTTTACTCAGCGTTCCTAATG
GCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATCCAAACACCAATTGACTGT
GTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCATGTAACAGCGGATGTACCC
AAACCAGGAACTCCAATCTATGTTGTTAAGGCATTTTTACCTGTTATAGAGTCATTTGGA
TTTGAGACCGACCTGAGGTACCATACACAGGGACAGGCCTTTTGCCTATCAGTGTTCGAT
CACTGGGCTATTGTTCCTGGTGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTGGAA
CCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAGGGC
ATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCCATGATGAACGAGCTGGCG
CANAGGCTGCTGATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGG
TTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACACTGGGA
ACTGGAATCAACCTTTGGAATCAGCCAAGTGCTCACCTGTTCGCATGCCCATTGCTGCTG
CGCTTTATCTGCCGCATGTTGATGGTCGGGTGTTTTTGTGATTGATGGTTTTGGTAGACG
GGAGTCCCATCTATTCATCTTTATGTATGTCTCTTCTGAACATTTCATCATCTAACCTAT
CAGTTTTAGTTAGCCATTCGGAACTGGAGATAAGTTTTGAGGGGCGATGATATCATCTAA
TCTGGATTGCAGCATGGATGGTGTAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGT
TCCATCTAATGTACTACAAGTAGCATTCTACNCCCTTTGAGTTTTTGAAGGAAAAAAAAA
A

consensusID : consensus_12380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [AGCACAAGTGCTCACACTGTTCACGCATGCCCNTTGCTGCTGCAGCTTTATCTCGCCAGCATGTTGATGTTCGGGTGTTTTTGTGATTGATGGTTTTGGTAGACGGGAGTGCCCATGCTGATGTTGCATGCTTGTAATGGTNAATGGTGACCTGCTTGCCTGGTGAACAATGTGTGTGCATGCATGCTGAACACTTGATGCAGTTNTTGAGTTGACGCCCACTTGCGGGAACTGGGAGATAAATTTTGAGGGGCGATGGATAATCCATGCTAATGCTGGATTCGCACCGCCACTGGGATGGGTGTAAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACAAGTACCATTCTACACCCTTTGAGTTTTTGAAGGAAAAAAAAAA]

[+] EMBL BM420572             [AGCACAAGTGCTCACACTGTTCACGCATGCCCNTTGCTGCTGCAGCTTTATCTCGCCAGCATGTTGATGTTCGGGTGTTTTTGTGATTGATGGTTTTGGTAGACGGGAGTGCCCATGCTGATGTTGCATGCTTGTAATGGTNAATGGTGACCTGCTTGCCTGGTGAACAATGTGTGTGCATGCATGCTGAACACTTGATGCAGTTNTTGAGTTGACGCCCACTTGCGGGAACTGGGAGATAAATTTTGAGGGGCGATGGATAATCCATGCTAATGCTGGATTCGCACCGCCACTGGGATGGGTGTAAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACAAGTACCATTCTACACCCTTTGAGTTTTTGAAGGAAAAAAAAAA]




>consensus_12380#1
AGCACAAGTGCTCACACTGTTCACGCATGCCCNTTGCTGCTGCAGCTTTATCTCGCCAGC
ATGTTGATGTTCGGGTGTTTTTGTGATTGATGGTTTTGGTAGACGGGAGTGCCCATGCTG
ATGTTGCATGCTTGTAATGGTNAATGGTGACCTGCTTGCCTGGTGAACAATGTGTGTGCA
TGCATGCTGAACACTTGATGCAGTTNTTGAGTTGACGCCCACTTGCGGGAACTGGGAGAT
AAATTTTGAGGGGCGATGGATAATCCATGCTAATGCTGGATTCGCACCGCCACTGGGATG
GGTGTAAATGACTGATGTGATCCTTTTGTCCTTGTCCATTGTTCCATCTAATGTACTACA
AGTACCATTCTACACCCTTTGAGTTTTTGAAGGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12380#0      AGCTAAAGCTGCCACCTAATGATGCATATTTCAAGCTACGGCATACACTGGAGGCGATCA 60
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ATGATCTCATCTCGTCTTGCCTCTACCACAGTAGGTGGCACTCAACTGGTTGATCCTGCT 120
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GCTGGAAATGTTTGTTTTGCAAGTGGTTCTGCAGGCTGGTCTTTTACCTTGCAATCTTTT 180
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GCTCATCTTTATTTAAAGATCCATGGGATTCAATTTGATCATGAGAAATTTGCATCGCGT 240
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CTATGGGGAGACCTATATTATCACCCTGACACTAGAACCTTCAAAAAGAAGCCTCCAAAG 300
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GAAGGAGCTAATAGATCATTTGTTGAGTTTGTCCTTGAACCTTTGTACAAAATATATAGT 360
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CAGGTTGTTGGGGAGTCAAAGGGTAAGGTTGAAGCAACTCTTTCTGAGCTGGGTGTGACG 420
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CTGAGCAATGCAGCTTATAAGCTTAATGTTAGGCCTTTGCTGAGATTAGCTTGTCGCTCA 480
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ATTTTCGGGACTTCTACTGGCTTTACTGACATGCTAGTGAAACACATACCCTCTGTCAAG 540
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GATGCTGCTCCAAGGAAGATAGAACACATATACACTGGTCCACAAGATTCCACTATTGTG 600
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GATGCTATGAAAAAATGTGATCCACATGCGCCCCTTATGGTTAATGTTACAAAGTTGTAT 660
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CCTAAGTCTGACTGTAGTGTCTTTGATGCCTTTGGACGAGTTTATAGTGGCACAATACAG 720
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ACTGGGCAAACTGTGCGTGTTCTTGGAGAANGCTATTCTCCTGATGATGAAGAAGATATG 780
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ACTGTGAAAGAGGTTACTAAGTTGTGGGTGTATCAGGCACGGTACCGTGTTCCAATTAGT 840
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      AAAGCCCCTGCTGGTTCTTGGGTTCTTATTGAAGGTGTAGATGCATCAATTATGAAAACT 900
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GCAACTATATGTCCTATGAAGATGGATGAAGATGTCTACATATTTAGACCTCTACGTTTC 960
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      AATACTCTACCTGTCGTGAAAATAGCAGCTGAGCCTCTAAACCCAAGTGAGCTCCCTAAG 1020
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ATGGTGGAAGGTCTTCGTAAAATCAGTAAGAGTTATCCTCTTGCTGTTACTAAGGTGGAA 1080
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GAGTCTGGAGAACACACTATCCTTGGGACTGGTGAGCTTTATCTAGATTCTATAATGAAG 1140
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GACCTCAGAGAGCTTTACTCTGAGGTAGAAGTGAAGGTTGCAGATCCAGTCGTGACATTT 1200
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      TGTGAAACAGTTGTTGATACTTCTTCGATGAAATGCTTTGCTGAAACACCCAACAAGAGG 1260
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      AACAAAATTACCATGGTTGCTGAACCATTGGAAAAGGGCTTGGCTGAAGATATTGAGAAC 1320
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GGCCTTGTTAGCCTGGACTCAAGGCAAAAGGAAATCACTGACTTCTTTCGTCAACGCTAC 1380
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CAGTGGGATGTGCTAGCAGCAAGGTCAATATGGGCTTTTGGGCCTGAAAAGCAGGGTCCT 1440
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      AACATTCTCTTAGATGACACCCTTTCAGTCGAGGTGGATAAAAACTTGCTCAATGCAGTC 1500
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      AAAGATTCAATTGTTCAAGGGTTTCAATGGGGTGCTAGAGAAGGTCCGCTGTGTGATGAA 1560
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CCAATTAGAAATGTGAAATTCAAGATCTTAAATGCAAACATAGCTCCTGAACCGTTGCAC 1620
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CGTGGTGGTGGTCAGATAATTCCAACAGCTCGTCGTGTGGTTTACTCAGCGTTCCTAATG 1680
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GCTAATCCACGCCTTATGGAGCCTGTATATTATATTGAGATCCAAACACCAATTGACTGT 1740
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      GTCTCTGCCATATATACGGTGCTATCCCGTCGTCGAGGGCATGTAACAGCGGATGTACCC 1800
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      AAACCAGGAACTCCAATCTATGTTGTTAAGGCATTTTTACCTGTTATAGAGTCATTTGGA 1860
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      TTTGAGACCGACCTGAGGTACCATACACAGGGACAGGCCTTTTGCCTATCAGTGTTCGAT 1920
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CACTGGGCTATTGTTCCTGGTGACCCTTTAGACAAGAATATTGTCCTCCGGCCTCTGGAA 1980
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CCAGCACCAATACAGCATCTTGCTCGTGAGTTTATGGTGAAGACTAGGCGAAGGAAGGGC 2040
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ATGAGTGAGGATGTGAGCATCAACAAGTTCTTTGATGAGGCCATGATGAACGAGCTGGCG 2100
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      CANAGGCTGCTGATCTCCATCTTCAAATGATGTAGTTCGAAATCGTGAAGTGGGGATTGG 2160
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      TTTCTTCATATTGATGATCTTTAGAAGATGCGATGGCTTATGTCTTCTTTTACACTGGGA 2220
consensus_12380#1      ------------------------------------------------------------
                                                                                   

consensus_12380#0      ACTGGAATCAACCTTTGGAATCAGC-CAAGTGCTCAC-CTGTTC--GCATGCCCATTGCT 2276
consensus_12380#1      ----------------------AGCACAAGTGCTCACACTGTTCACGCATGCCCNTTGCT 38
                                             *** *********** ******  ******** *****

consensus_12380#0      GCTGC-GCTTTATCT-GCC-GCATGTTGATGGTCGGGTGTTTTTGTGATTGATGGTTTTG 2333
consensus_12380#1      GCTGCAGCTTTATCTCGCCAGCATGTTGATGTTCGGGTGTTTTTGTGATTGATGGTTTTG 98
                       ***** ********* *** *********** ****************************

consensus_12380#0      GTAGACGGGAGT-CCCATC-----------TATTCATCTTTATGTATG----------TC 2371
consensus_12380#1      GTAGACGGGAGTGCCCATGCTGATGTTGCATGCTTGTAATGGTNAATGGTGACCTGCTTG 158
                       ************ *****            *  *  *  *  *  ***          * 

consensus_12380#0      TCTTCTGAACATTTCAT---CATCTAACCTAT----------CAGTTTT--AGTTAGC-- 2414
consensus_12380#1      CCTGGTGAACAATGTGTGTGCATGCATGCTGAACACTTGATGCAGTTNTTGAGTTGACGC 218
                        **  ****** *   *   ***  *  **            ***** *  ****  *  

consensus_12380#0      -CATTCG---GAACTGG-AGATAAGTTTTGAGGGGCGATG-ATA--TCAT-CTAAT-CTG 2464
consensus_12380#1      CCACTTGCGGGAACTGGGAGATAAATTTTGAGGGGCGATGGATAATCCATGCTAATGCTG 278
                        ** * *   ******* ****** *************** ***   *** ***** ***

consensus_12380#0      GATT------GCAGCATGGATGG-TGTAA-TGACTGATGTGATCCTTTTGTCCTTGTCCA 2516
consensus_12380#1      GATTCGCACCGCCACTGGGATGGGTGTAAATGACTGATGTGATCCTTTTGTCCTTGTCCA 338
                       ****      **  *  ****** ***** ******************************

consensus_12380#0      TTGTTCCATCTAATGTACTACAAGTAGCATTCTACNCCCTTTGAGTTTTTGAAGGAAAAA 2576
consensus_12380#1      TTGTTCCATCTAATGTACTACAAGTACCATTCTACACCCTTTGAGTTTTTGAAGGAAAAA 398
                       ************************** ******** ************************

consensus_12380#0      AAAAA 2581
consensus_12380#1      AAAAA 403
                       *****