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Oryza sativa
cluster # 12393 cluster # 12393       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12393#0 length = 1264 sequences # 6  
consensus_12393#1 length = 672 sequences # 1  
consensus_12393#2 length = 546 sequences # 2  
consensus_12393#3 length = 263 sequences # 1  

consensusID : consensus_12393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1264
fasta sequence
                              [TCCCATCCACGTTCGGCCACTTCCTCCTTTCTCAAGCTCTCTCTCCTCTCCTCGCAGTCGCAGCGCAGTAGTCTCTAGGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGCCGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGCAAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAGGAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAGAAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGAC-GGGGAAGACAACTTTTATGCACCGACTGGTATGCCACACCCAGGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGACCCTGCGGTGATGACGCTGCCGTTTGGGGCCAACATAGATATCCGTGATACCGTTCGGTACAAGGAGGTGATGAAGGAGTATGGTCTTGGCCCCAATGGCGGTATCCTCACCTCTCTCAACCTATTCTCCACCAAGTTTGACGAGGTTATATCTGTTATTGAAAGACGAGCCGACCAGCTGGATTATGTCCTGGTGGACACGCCAGGGCAGATTGAAATCTTCACTTGGTCGGCTTCAGGAGCTATCATAACAGAAGCTTTTGCATCGACATTTCCAACAGTTGTCGCATATGTTGTTGACACCCCCAGATCAACGAGCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCTGTACAAGACCCGCTTACCGATGATTCTGACATTTAATAAGGTTGATGTTGCCAAGCATGAGTTTGCTCTTGAGTGGATGGAAGACTTTGAGGCGTTTCAGACCGCCTTGGATTCTGACTCATCATACTCCTCTACATTTACCCGAAGCCTCTCTCTTGTCCTGGATGAGTTTTACAAAAATCTGCGGTCTGTTGGAGTATCTGCCGTATCTGGCGCTGGAGTCAATTCATTTTTTGAAGCTATTGAAGCAAGTGCCAAAGAATACATGGAGAATTACAGGGCTGATCTTGACAAGAGGATTGCTGAAAAAGAGAGGTTAGAGGCTGAGCGTAGGAAGGAGAACATGGAAAGGTTGCAAAGAGACATGGAAAACTCTAAAGGACAGACTGTTGTGCTCAGCACTGGTTTGAAGGACAAAAATCGTGCTACGGATATGATGGATGATGCTGATGAGGAGGAAGAGGAGGCGGCATTAGAAGATTTCA]

[+] EMBL AK073391             [TCCCATCCACGTTCGGCCACTTCCTCCTTTCTCAAGCTCTCTCTCCTCTCCTCGCAGTCGCAGCGCAGTAGTCTCTAGGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGCCGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGCAAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAGGAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAGAAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGAC GGGGAAGACAACTTTTATGCACCGACTGGTATGCCACACCCAGGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGACCCTGCGGTGATGACGCTGCCGTTTGGGGCCAACATAGATATCCGTGATACCGTTCGGTACAAGGAGGTGATGAAGGAGTATGGTCTTGGCCCCAATGGCGGTATCCTCACCTCTCTCAACCTATTCTCCACCAAGTTTGACGAGGTTATATCTGTTATTGAAAGACGAGCCGACCAGCTGGATTATGTCCTGGTGGACACGCCAGGGCAGATTGAAATCTTCACTTGGTCGGCTTCAGGAGCTATCATAACAGAAGCTTTTGCATCGACATTTCCAACAGTTGTCGCATATGTTGTTGACACCCCCAGATCAACGAGCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCTGTACAAGACCCGCTTACCGATGATTCTGACATTTAATAAGGTTGATGTTGCCAAGCATGAGTTTGCTCTTGAGTGGATGGAAGACTTTGAGGCGTTTCAGACCGCCTTGGATTCTGACTCATCATACTCCTCTACATTTACCCGAAGCCTCTCTCTTGTCCTGGATGAGTTTTACAAAAATCTGCGGTCTGTTGGAGTATCTGCCGTATCTGGCGCTGGAGTCAATTCATTTTTTGAAGCTATTGAAGCAAGTGCCAAAGAATACATGGAGAATTACAGGGCTGATCTTGACAAGAGGATTGCTGAAAAAGAGAGGTTAGAGGCTGAGCGTAGGAAGGAGAACATGGAAAGGTTGCAAAGAGACATGGAAAACTCTAAAGGACAGACTGTTGTGCTCAGCACTGGTTTGAAGGACAAAAATCGTGCTACGGATATGATGGATGATGCTGATGAGGAGGAAGAGGAGGCGGCATTAGAAGATTTC ]
[+] EMBL C72610               [                                            CCTCTCCTCGCAGTCGCAGCGCAGTAGTCTCTAGGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGCCGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGCAAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAGGAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAGAAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGACGGGGGAAGACAACTTTTATGCACCGACTGGTATGCCACACCCANGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGA CCTGCGGTGATTAAGTTGCCGTTTGGGGGCAAAATAGATATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB651157             [                                             CTCTCCTCGCAGTCGCAGCGCAGTAGTCTCTAGGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGCCGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGCAAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAGGAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAGAAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGAC GGGGAAGACAACTTTTATGCACCGACTGGTATGCCACACCCAGGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGACCCTGCGGTGATGACGCTGCCGTTTGGGGCCAACATAGATATCCGTGATACCGTTCGGTACAAGGAGGTGATGAAGGAGTATGGTCTTGGCCCCAATGGCGGTATCCTCACCTCTCTCAACCTATTCTCCACCAAGTTTGACGAGGTTATATCTGTTATTGAAAGACGAGCCGACCAGCTGGATTATGTCCTGGTGGACACGCCAGGGCAGATTGAAATCTTCACTTGGTCGGCTTCAGGAGCTATCATAACAGAAGCTTTTGCATCGACATTTCCAACAGTTGTCGCATATGTTGTTGACACCCCCAGATCAACGAGCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCTGTACAAGACCCGCTTACCGATGATTCTGACATTTAATAGGGTTGATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB659298             [                                                                           TACGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGCCGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGCAAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAGGAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAGAAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGAC GGGGAAGACAACTTTTATGCACCGACTGGTATGCCACACCCAGGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGACCCTGCGGTGATGACGCTGCCGTTTGGGGCCAACATAGATATCCGTGATACCGTTCGGTACAAGGAGGTGATGAAGGAGTATGGTCTTGGCCCCAATGGCGGTATCCTCACCTCTCTCAACCTATTCTCCACCAAGTTTGACGAGGTTATATCTGTTATTGAAAGACGAGCCGACCAGCTGGATTATGTCCTGGTGGACACGCCAGGGCAGATTGAAATCTTCACTTGGTCGGCTTCAAGAGCTATCATAACAGAAGCTTTTGCATCGACATTTCCAACAGTTGTCGCATATGTTGTTGACACCCCCAGATCAACGAGCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCTGTACAAGACCCGCTTACCGATGATTCTGACATTTAATAAGGTTGATGTTGCCAAGCATGAGTTTGCTCTTGAGTGGATGGAAGACTTTGAGGCGTTTCAGACCGCCTTGGATTCTGACTCATC                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB659299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCTGTACAAGACCCGCTTACCGATGATTCTGACATTTAATAAGGTTGATGTTGCCAAGCATGAGTTTGCTCTTGAGTGGATGGAAGACTTTGAGGCGTTTCAGACCGCCTTGGATTCTGACTCATCATACTCCTCTACATTTACCCGAAGCCTCTCTCTTGTCCTGGATGAGTTTTACAAAAATCTGCGGTCTGTTGGAGTATCTGCCGTATCTGGCGCTGGAGTCAATTCATTTTTTGAAGCTATTGAAGCAAGTGCCAAAGAATACATGGAGAATTACAGGGCTGATCTTGACAAGAGGATTGCTGAAAAAGAGAGGTTAGAGGCTGAGCGTAGGAAGGAGAACATGGAAAGGTTGCAAAGAGACATGGAAAACTCTAAAGGACAGACTGTTGTGCTCAGCACTGGTTTGAAGGACAAAAATCGTGCTACGGATATGATGGATGATGCTGATGAGGAGGAAGAGGAGGCGGCATTAGAAGATTTCA]
[-] EMBL CB651158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTGAGGCGTTTCAGACCGCCTTGGATTCTGACTCATCATACTCCTCTACATTTACCCGAAGCCTCTCTCTTGTCCTGGATGAGTTTTACAAAAATCTGCGGTCTGTTGGAGTATCTGCCGTATCTGGCGCTGGAGTCAATTCATTTTTTGAAGCTATTGAAGCAAGTGCCAAAGAATACATGGAGAATTACAGGGCTGATCTTGACAAGAGGATTGCTGAAAAAGAGAGGTTAGAGGCTGAGCGTAGGAAGGAGAACATGGAAAGGTTGCAAAGAGACATGGAAAACTCTAAAGGACAGACTGTTGTGCTCAGCACTGGTTTGAAGGACAAAAATCGTGCTACGGATATGATGGATGATGCTGATGAGGAGGAAGAGGAGGCGGCATTAGAAGATTTCA]


>consensus_12393#0 TCCCATCCACGTTCGGCCACTTCCTCCTTTCTCAAGCTCTCTCTCCTCTCCTCGCAGTCG CAGCGCAGTAGTCTCTAGGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGC CGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGC AAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAG GAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAG AAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGACGGGGAAGACAACTTTTATGCAC CGACTGGTATGCCACACCCAGGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGACCCT GCGGTGATGACGCTGCCGTTTGGGGCCAACATAGATATCCGTGATACCGTTCGGTACAAG GAGGTGATGAAGGAGTATGGTCTTGGCCCCAATGGCGGTATCCTCACCTCTCTCAACCTA TTCTCCACCAAGTTTGACGAGGTTATATCTGTTATTGAAAGACGAGCCGACCAGCTGGAT TATGTCCTGGTGGACACGCCAGGGCAGATTGAAATCTTCACTTGGTCGGCTTCAGGAGCT ATCATAACAGAAGCTTTTGCATCGACATTTCCAACAGTTGTCGCATATGTTGTTGACACC CCCAGATCAACGAGCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCTG TACAAGACCCGCTTACCGATGATTCTGACATTTAATAAGGTTGATGTTGCCAAGCATGAG TTTGCTCTTGAGTGGATGGAAGACTTTGAGGCGTTTCAGACCGCCTTGGATTCTGACTCA TCATACTCCTCTACATTTACCCGAAGCCTCTCTCTTGTCCTGGATGAGTTTTACAAAAAT CTGCGGTCTGTTGGAGTATCTGCCGTATCTGGCGCTGGAGTCAATTCATTTTTTGAAGCT ATTGAAGCAAGTGCCAAAGAATACATGGAGAATTACAGGGCTGATCTTGACAAGAGGATT GCTGAAAAAGAGAGGTTAGAGGCTGAGCGTAGGAAGGAGAACATGGAAAGGTTGCAAAGA GACATGGAAAACTCTAAAGGACAGACTGTTGTGCTCAGCACTGGTTTGAAGGACAAAAAT CGTGCTACGGATATGATGGATGATGCTGATGAGGAGGAAGAGGAGGCGGCATTAGAAGAT TTCA



consensusID : consensus_12393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [GTGGGAGGTGTTCCCGCGTTCTGGCCGCGGAGCTCCAATCCATTTTTTGAAGCTACTCAACCAAGTCCCCAAAGAATCCATGCAGAATTCCAGGGCCTGATCCTTGACAAAAGGGATTGCTGAAAAAGAGAGGTTAGCGGCTGAGCGTCGGAAGGAGAACATGGAAAGGTTGCAAAGAGCCATGGAAAACTCTAAGGGACAGACTGTTGTGCTCAGCCCTGGTTGAAAGGACAAAAATCGTGCTACGGATTTGATGGCTGATGCTGATGAGGAGGAAGAGGCGGCGGCATTAGAAGATTTCCGGATTTCTGAGGATGATGCGGATGAGGATGAGGATGAAGGGGAAGATGAAGAAGTGGAGCATTTTGGCTTATAAGGTGCCTGAACGTAGCGTTTCCTTGCCGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTGGTATGCTCATGTCGGCAATGTATGCCCCGATTCTATAAAACTTGATATTGAACTTCTGTTTCCTACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760812             [GTGGGAGGTGTTCCCGCGTTCTGGCCGCGGAGCTCCAATCCATTTTTTGAAGCTACTCAACCAAGTCCCCAAAGAATCCATGCAGAATTCCAGGGCCTGATCCTTGACAAAAGGGATTGCTGAAAAAGAGAGGTTAGCGGCTGAGCGTCGGAAGGAGAACATGGAAAGGTTGCAAAGAGCCATGGAAAACTCTAAGGGACAGACTGTTGTGCTCAGCCCTGGTTGAAAGGACAAAAATCGTGCTACGGATTTGATGGCTGATGCTGATGAGGAGGAAGAGGCGGCGGCATTAGAAGATTTCCGGATTTCTGAGGATGATGCGGATGAGGATGAGGATGAAGGGGAAGATGAAGAAGTGGAGCATTTTGGCTTATAAGGTGCCTGAACGTAGCGTTTCCTTGCCGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTGGTATGCTCATGTCGGCAATGTATGCCCCGATTCTATAAAACTTGATATTGAACTTCTGTTTCCTACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAAAAAAAAAAAAAAAA]


>consensus_12393#1 GTGGGAGGTGTTCCCGCGTTCTGGCCGCGGAGCTCCAATCCATTTTTTGAAGCTACTCAA CCAAGTCCCCAAAGAATCCATGCAGAATTCCAGGGCCTGATCCTTGACAAAAGGGATTGC TGAAAAAGAGAGGTTAGCGGCTGAGCGTCGGAAGGAGAACATGGAAAGGTTGCAAAGAGC CATGGAAAACTCTAAGGGACAGACTGTTGTGCTCAGCCCTGGTTGAAAGGACAAAAATCG TGCTACGGATTTGATGGCTGATGCTGATGAGGAGGAAGAGGCGGCGGCATTAGAAGATTT CCGGATTTCTGAGGATGATGCGGATGAGGATGAGGATGAAGGGGAAGATGAAGAAGTGGA GCATTTTGGCTTATAAGGTGCCTGAACGTAGCGTTTCCTTGCCGGTGTTTAGGAGAACCT AGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGGAAATGAAATTGTCAATATCATA TCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTGGTAT GCTCATGTCGGCAATGTATGCCCCGATTCTATAAAACTTGATATTGAACTTCTGTTTCCT ACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAAAA AAAAAAAAAAAA



consensusID : consensus_12393#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 546
fasta sequence
                              [AAGGGGAAGATGAAGAAGTGGAGCATTTTGGCTTATAAGGTGACTGAACGTAGCGTTTACTTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAAACTTGATATTGAACTTCTGTTTCCTACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAATCTGTTCGGTTGTAGTTCCATATAACCTTAGCCGGAAGAGGACCCTCTGACTTTCTTCCTTCTGACTTTGAGTCACTGATACGTGAGTTTATTGGGTAGAGGGTCCACATATCAATGATATAAGTTAAATATAAGTAGGTTAGAGCATCTCTAACAGTCTATCCAAATTTGACTGTCCAAATGTCTATTTGGCCAACTCTCCATTTAATTTAGCAAGTCAAATTGT]

[+] EMBL AK059348             [AAGGGGAAGATGAAGAAGTGGAGCATTTTGGCTTATAAGGTGACTGAACGTAGCGTTTACTTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAAACTTGATATTGAACTTCTGTTTCCTACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAATCTGTTCGGTTGTAGTTCCATATAACCTTAGCCGGAAGAGGACCCTCTGACTTTCTTCCTTCTGACTTTGAGTCACTGATACGTGAGTTTATTGGGTAGAGGGTCCACATATCAATGATATAAGTTAAATATAAGTAGGTTAGAGCATCTCTAACAGTCTATCCAAATTTGACTGTCCAAATGTCTATTTGGCCAACTCTCCATTTAATTTAGCAAGTCAAATTGT]
[+] EMBL AK063868             [AAGGGGAAGATGAAGAAGTGGAGCATTTTGGCTTATAAGGTGACTGAACGTAGCGTTTACTTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAAACTTGATATTGAACTTCTGTTTCCTACAGCTGCAATGCCCAAAGTTCATCGCAA                                                                                                                                                                                                                                                               ]


>consensus_12393#2 AAGGGGAAGATGAAGAAGTGGAGCATTTTGGCTTATAAGGTGACTGAACGTAGCGTTTAC TTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCAGGTGATTAAAACGG AAATGAAATTGTCAATATCATATCAGTAGGGGTGGCTGATTGCTAGTCTGTAAATCGACT CTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAAACT TGATATTGAACTTCTGTTTCCTACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGC GAGAGAAGGAAAGCTAAAAATCTGTTCGGTTGTAGTTCCATATAACCTTAGCCGGAAGAG GACCCTCTGACTTTCTTCCTTCTGACTTTGAGTCACTGATACGTGAGTTTATTGGGTAGA GGGTCCACATATCAATGATATAAGTTAAATATAAGTAGGTTAGAGCATCTCTAACAGTCT ATCCAAATTTGACTGTCCAAATGTCTATTTGGCCAACTCTCCATTTAATTTAGCAAGTCA AATTGT



consensusID : consensus_12393#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence
                              [AAGGGGAAGATGAAGAAGTGGAGCACTTTTGGCTTATAAGGTGACTGAACGTAGCGTTTACTTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCCGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAACTTGATATTGAACTTCAAAAAAAAAA]

[+] EMBL BI807151             [AAGGGGAAGATGAAGAAGTGGAGCACTTTTGGCTTATAAGGTGACTGAACGTAGCGTTTACTTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCCGGTGATTAAAACGGAAATGAAATTGTCAATATCATATCAGTAGGGGTGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAACTTGATATTGAACTTCAAAAAAAAAA]


>consensus_12393#3 AAGGGGAAGATGAAGAAGTGGAGCACTTTTGGCTTATAAGGTGACTGAACGTAGCGTTTA CTTGACGGTGTTTAGGAGAACCTAGTCATGCCTGGTGTTTCTTTCCCGGTGATTAAAACG GAAATGAAATTGTCAATATCATATCAGTAGGGGTGCTGATTGCTAGTCTGTAAATCGACT CTTCTCTGGGTCAATCTCGTATGCTCATGTCGGCAATGTATGCCACGATTCTATAAACTT GATATTGAACTTCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      TCCCATCCACGTTCGGCCACTTCCTCCTTTCTCAAGCTCTCTCTCCTCTCCTCGCAGTCG 60
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      CAGCGCAGTAGTCTCTAGGGTTTTAGCGGGCGGTTGTCCTCCACCCGCTCGCCGCGTGGC 120
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      --------------------GTGGGAGGTGTTCCCGCGTTCTGGCCGCGGAGCTCCAATC 40
consensus_12393#0      CGCCGCCTTCTCCCCGCGCCACCGCCGATGGACGTCGACTCCGACCCAGCCGCCGCGGGC 180
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      CATTTTTTGAAGCTACTCAACCAAGTCCCCAAAGAATCCATGCAGAATTCCAGGGCCTGA 100
consensus_12393#0      AAGCCCACCCAGATGGACCTCGAGGACCAGACTGACGCGAAGGGGAAGGGGAAGAGCGAG 240
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      TCCTTGACAAAAGGGATTGCTGAAAAAGAGAGGTTAGCGGCTGAGCGTCGGAAGGAGAAC 160
consensus_12393#0      GAGCTCGCGGACTCCATCGGGAGCCTCTCCATCGGCCCGGAGCGCACCAATTTCAAGAAG 300
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ATGGAAAGGTTGCAAAGAGCCATGGAAAACTCTAAGGGACAGACTGTTGTGCTCAGCCCT 220
consensus_12393#0      AAGCCGGTGATCATCATCGTCATCGGCATGGCCGGGACGGGGAAGACAACTTTTATGCAC 360
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      GGTTGAAAGGACAAAAATCGTGCTACGGATTTGATGGCTGATGCTGATGAGGAGGAAGAG 280
consensus_12393#0      CGACTGGTATGCCACACCCAGGCTTCAAACATGAGGGGTTATGTGCTCAACCTTGACCCT 420
                                                                                   

consensus_12393#2      ----------------------------------------------------------AA 2
consensus_12393#3      ----------------------------------------------------------AA 2
consensus_12393#1      GCGGCGGCATTAGAAGATTTCCGGATTTCTGAGGATGATGCGGATGAGGATGAGGATGAA 340
consensus_12393#0      GCGGTGATGACGCTGCCGTTTGGGGCCAACATAGATATCCGTGATACCGTTCGGTAC-AA 479
                                                                                 **

consensus_12393#2      GGGGAAGATGAAGAAGTGGAG---------CA-TTTTGGC-TTATAAGGTGACTGAACGT 51
consensus_12393#3      GGGGAAGATGAAGAAGTGGAG---------CACTTTTGGC-TTATAAGGTGACTGAACGT 52
consensus_12393#1      GGGGAAGATGAAGAAGTGGAG---------CA-TTTTGGC-TTATAAGGTGCCTGAACGT 389
consensus_12393#0      GGAGGTGATGAAGGAGTATGGTCTTGGCCCCAATGGCGGTATCCTCACCTCTCTCAACCT 539
                       ** *  ******* ***   *         ** *   **  *  * *  *  ** *** *

consensus_12393#2      AGCGTTTAC-----TTGACGG---------TGTTTAGGAGAACCTAGTCATGCCTGGTGT 97
consensus_12393#3      AGCGTTTAC-----TTGACGG---------TGTTTAGGAGAACCTAGTCATGCCTGGTGT 98
consensus_12393#1      AGCGTTTCC-----TTGCCGG---------TGTTTAGGAGAACCTAGTCATGCCTGGTGT 435
consensus_12393#0      ATTCTCCACCAAGTTTGACGAGGTTATATCTGTTATTGAAAGACGAGCCGACCAGCTGGA 599
                       *   *   *     *** **          ****   ** *  * ** *   *     * 

consensus_12393#2      TTCTTTCCAGGTGATTAAAACGGA----AATGAAATTGTCAATATCATATCAGTAGGGG- 152
consensus_12393#3      TTCTTTCCCGGTGATTAAAACGGA----AATGAAATTGTCAATATCATATCAGTAGGGG- 153
consensus_12393#1      TTCTTTCCAGGTGATTAAAACGGA----AATGAAATTGTCAATATCATATCAGTAGGGG- 490
consensus_12393#0      TTATGTCCTGGTGGACACGCCAGGGCAGATTGAAATCTTCACTTGGTCGGCTTCAGGAGC 659
                       ** * *** ****   *   * *     * ******  *** *       *   *** * 

consensus_12393#2      TGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCA------ATCTCGT----AT 202
consensus_12393#3      TG-CTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCA------ATCTCGT----AT 202
consensus_12393#1      TGGCTGATTGCTAGTCTGTAAATCGACTCTTCTCTGGGTCA------ATCTGGT----AT 540
consensus_12393#0      TATCATAACAGAAGCTTTTGCATCGACATTTCCAACAGTTGTCGCATATGTTGTTGACAC 719
                       *  *  *     **  * *  ******  ***     **        ** * **    * 

consensus_12393#2      GCTCATGTCGGCAATGTATGCCACGATTCTATAAAACTTGATATTGAACTTCTGTTTCCT 262
consensus_12393#3      GCTCATGTCGGCAATGTATGCCACGATTCTATAAA-CTTGATATTGAACTTCAAAAAAAA 261
consensus_12393#1      GCTCATGTCGGCAATGTATGCCCCGATTCTATAAAACTTGATATTGAACTTCTGTTTCCT 600
consensus_12393#0      CCCCAGATCAACGAGCCCTGTTACTTTCATGAGCAACATGCTTTATGCCTGCAGTATTCT 779
                        * **  **  * *    **   *  *  *    * * ** * *    ** *        

consensus_12393#2      ACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAATC 322
consensus_12393#3      AA---------------------------------------------------------- 263
consensus_12393#1      ACAGCTGCAATGCCCAAAGTTCATCGCAAATTCTTGGCGAGAGAAGGAAAGCTAAAAAAA 660
consensus_12393#0      GTACAAGACCCGCTTACCGATGATT-CTGACATTTAATAAGGTTGATGTTGCCAAGCATG 838
                                                                                   

consensus_12393#2      TGTTCGGTTGTAGTTCCATATAA--CCTTAGCCGGAAGAGGACCCTCTGACTTTCTTCCT 380
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      AAAAAAAAAAAA------------------------------------------------ 672
consensus_12393#0      AGTTTGCTCTTGAGTGGATGGAAGACTTTGAGGCGTTTCAGACCGCCTTGGATTCTGACT 898
                                                                                   

consensus_12393#2      TCTGACTTTGAGTCACTGATACGTGAG---TTTATTGGGTAGAGGGTCCACATATCAATG 437
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      CATCATACTCCTCTACATTTACCCGAAGCCTCTCTCTTGTCCTGGATGAGTTTTACAAAA 958
                                                                                   

consensus_12393#2      ATATAAGTTAAATATAAGTAG--GTTAGAGCATCTCTAACAGTCTATCCAAATTTGACTG 495
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      ATCTGCGGTCTGTTGGAGTATCTGCCGTATCTGGCGCTGGAGTCAATTCATTTTTTGAAG 1018
                                                                                   

consensus_12393#2      TCCAAATGTCTATTTGGCCAACTCTCCATTTAATTTAGCAAGTCAAATTGT--------- 546
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      -CTATTGAAGCAAGTGCCAAAGAATACATGGAGAATTACAGGGCTGATCTTGACAAGAGG 1077
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      ATTGCTGAAAAAGAGAGGTTAGAGGCTGAGCGTAGGAAGGAGAACATGGAAAGGTTGCAA 1137
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      AGAGACATGGAAAACTCTAAAGGACAGACTGTTGTGCTCAGCACTGGTTTGAAGGACAAA 1197
                                                                                   

consensus_12393#2      ------------------------------------------------------------
consensus_12393#3      ------------------------------------------------------------
consensus_12393#1      ------------------------------------------------------------
consensus_12393#0      AATCGTGCTACGGATATGATGGATGATGCTGATGAGGAGGAAGAGGAGGCGGCATTAGAA 1257
                                                                                   

consensus_12393#2      -------
consensus_12393#3      -------
consensus_12393#1      -------
consensus_12393#0      GATTTCA 1264
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)