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Oryza sativa
cluster # 12394 cluster # 12394       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12394#0 length = 1438 sequences # 6  
consensus_12394#1 length = 835 sequences # 3  
consensus_12394#2 length = 486 sequences # 1  

consensusID : consensus_12394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1438
fasta sequence
                              [ATCGGCAGCCACACCGCATATCATACACTCATACACATTTCGCTCGACCGATCCGCGCGCGCACGGAGAAGATGTGGGTGACGTCGATGCCGCAGGTGTGGGACGAGGAGGGGGTGGCGAAGGGCAGCGTGGTGACGCCGGCGCCGGCGACGGCGCTGCTGGGGTCGCTCGCGGGATGGATGTCCCGCGCCGTCGAGCCGCCGGCGCCGAGGCCGTGCGGCACGGAGGGTGGCCCGCCGGTGACCGCGACGAGGCTGAGGCTGCGCGACGGCCGCCACCTCGCCTACTGCGAGAGCGGCGTCCCCAAGGAGGAGGCCCGCTTCAAGGTCGTCTTCTCCCACGGCTTCACCGGCTCCCGCGAGGACAGCGTCCGCGCCTCCCAGGAGGTGGCTGAGGAGTTGGGC-GTGTACATGGTAGGCTTTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTGCCCTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCGGTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTGCTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATCTGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCACACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCANAGCTGGCTTCCCACCTCCACCGTCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGAAGGCGGATGGCTCGTTCCAGAAGAAAATGGACTTGGCGACACAACAAGGCATTCATGAGTCGTACTACCGTGACATGATGGTGATGTTCGGCAAGTGGGAGTTTGACCCGATGAGCTTGCCGAAGCCGCCATGCCCTGTGCATATCTGGCAGGGCGACGAGGACGGGCTTGTGCCGGTGGTGTTGCAGAGATACCTCGTTAGCCGGCTCAGCTGGGCGAACTACCATGAGCTCCCCGGAACCGGGCACTTCCTTTCTGCGGTTCCCGGGCTTGGAGACACCGTTCTTAGGACCATTTTCGGTTGAGTATATGTAGCAGTCAGAAGAAGCAACAGTTCAGAATGCTGATACTAAGTTATAGTGTCCCACCCGGTACATTACTTCGTTTAAATGGTAAGGCTGTTCGTTACTCGCTGATTAGCGATGATGATGATATAGATGAAAGGGCAGTGTAAAATGAGCTGCTCTGTTTTTTT-TTTGGTTTTTTTGGTGTAAAATGGCGTGGCCCAGATGCTACCCAAAAATGTTCTTTGACCTTGGAAAG-AAAGTG-TAGTATTATACAATGTGGACTCTTTTGTT---TAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU197652             [ATCGGCAGCCACACCGCATATCATACACTCATACACATTTCGCTCGACCGATCCGCGCGCGCACGGAGAAGATGTGGGTGACGTCGATGCCGCAGGTGTGGGACGAGGAGGGGGTGGCGAAGGGCAGCGTGGTGACGCCGGCGCCGGCGACGGCGCTGCTGGGGTCGCTCGCGGGATGGATGTCCCGCGCCGTCGAGCCGCCGGCGCCGAGGCCGTGCGGCACGGAGGGTGGCCCGCCGGTGACCGCGACGAGGCTGAGGCTGCGCGACGGCCGCCACCTCGCCTACTGCGAGAGCGGCGTCCCCAAGGAGGAGGCCCGCTTCAAGGTCGTCTTCTCCCACGGCTTCACCGGCTCCCGCGAGGACAGCGTCCGCGCCTCCCAGGAGGTGGCTGAGGAGTTGGGC GTGTACATGGTAGGCTTTGATCGCGCTGGATATGGTGAGAGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU172330             [                                                                                                                                                                                                                                                                                                                                                         TCACCGGCTCCCGCGAGGACAGCGTCCGCGCCTCCCAGGAGGTGGCTGAGGAGTTGGGCAGTGTACATGGTAGGCTTTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTGCCCTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCGGTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTGCTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATCTGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCACACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCANAGCTGGCTTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB630555             [                                                                                                                                                                                                                                                                                                                                                                                                   TGGCTTAAGAGTTGGGC GTGTACATGGTAGGCTTTGATCGTGCTGGATATGGTGAGAGTGATCCAAACCCCAATCCGCCTGTGAAGAGCGCTGCCCTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCGGTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTGCTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATCTGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTCTCACACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCAGAGCTGGCTTCCCACCTCCACCGTCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGAAGGCGGATGGCTCGTTCCAGAAGAAAATGGACTTGGCGACACAACAAGGCATTCATGAGTCGTACTACCGTGACATGATGGTGATGTTCGGCAAGTGGGAGTTTGACCCGATGAGCTTGCCGAAGCCGCCATGCCCTGTGCATATCTGGCAGGGCGACGAGGACGGGCTTGTGCCGGTGGTGTTGCAGAGATACCTCGTTAGCCGGCTCAGCTGGGCGAACTACCATGAGCTCCCCGGAACCGGGCAC                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB630556             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGAAGGCGGATGGCTCGTTCCAGAAGAAAATGGACTTGGCGACACAACAAGGCATTCATGAGTCGTACTACCGTGACATGATGGTGATGTTCGGCAAGTGGGAGTTTGACCCGATGAGCTTGCCGAAGCCGCCATGCCCTGTGCATATCTGGCAGGGCGACGAGGACGGGCTTGTGCCGGTGGTGTTGCAGAGATACCTCGTTAGCCGGCTCAGCTGGGCGAACTACCATGAGCTCCCCGGAACCGGGCACTTCCTTTCTGCGGTTCCCGGGCTTGGAGACACCGTTCTTAGGACCATTTTCGGTTGAGTATATGTAGCAGTCAGAAGAAGCAACAGTTCAGAATGCTGATACTAAGTTATAGTGTCCCACCCGGTACATTACTTCGTTTAAATGGTAAGGCTGTTCGTTACTCGCTGATTAGCGATGATGATGATATAGATGAAAGGGCAGTGTAAAATGAGCTGCTCTGTTTTTTTGTTTGGTTTTTTTGGTGTAAAATGGCGTGGCCCAGATGCTACCCAAAAATGTTCTTTGACCTGGGAAAGTAAAAAG TAGTATT                                             ]
[+] EMBL AU172331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCGACGAGGACGGGCTTGTGCCGGTGGTGTTGCAGAGATACCTCGTTAGCCGGCTCAGCTGGGCGAACTACCATGAGCTCCCCGGAACCGGGCACTTCCTGTNTGCGGTTCCCGGGCTTGGAGACNCCGTTNTTAGGACCATTTTCGGTTGAGTATATGTAGCAGTCAGAAGAAGCAACAGTTCAGAATGCTGATACTAAGTTATAGTGTCCCACCCGGTACATTACTTCGTTTAAATGGTAAGGCTGTTCGTTACTCGCTGATTAGCGATGATGATGATATAGATGAAAGGGCAGTGTAAAATGAGCTGCTCTGTTTTTTT TTTTGTTTTTTTGGTGTAAAATGGCGTGGCCCAGATGCTACCCAAAAATGTTCTTTGACCTTGGAAAG AAAGTGATAGTATTATACAATGTGGACTCTTTTGTT   TAAAAAAAAA          ]
[+] EMBL AU197653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTCGGTTGAGTATATGTAGCAGTCAGAAGAAGCAACAGTTCAGAATGCTGATACTAAGTTATAGTGTCCCNCCCGGTACATTACTTCGTTTAAATGGTAAGGCTGTTCGTTACTCGCTGATTAGCGATGATGATGATATAGATGAAAGGGCAGTGTAAAATGAGCTGCTCTGTTTTTTT TTT GTTTTTTTGGTGTAAAATGGCGTGGCCCAGATGCTACCCAAAAATGTTNTTTGACCTTGGAAAN AAAGTGATAGTATTATACAATGTGGACTCTTTTGTTTCGTAAAAAAAAAAAAAAAAAAA]


>consensus_12394#0 ATCGGCAGCCACACCGCATATCATACACTCATACACATTTCGCTCGACCGATCCGCGCGC GCACGGAGAAGATGTGGGTGACGTCGATGCCGCAGGTGTGGGACGAGGAGGGGGTGGCGA AGGGCAGCGTGGTGACGCCGGCGCCGGCGACGGCGCTGCTGGGGTCGCTCGCGGGATGGA TGTCCCGCGCCGTCGAGCCGCCGGCGCCGAGGCCGTGCGGCACGGAGGGTGGCCCGCCGG TGACCGCGACGAGGCTGAGGCTGCGCGACGGCCGCCACCTCGCCTACTGCGAGAGCGGCG TCCCCAAGGAGGAGGCCCGCTTCAAGGTCGTCTTCTCCCACGGCTTCACCGGCTCCCGCG AGGACAGCGTCCGCGCCTCCCAGGAGGTGGCTGAGGAGTTGGGCGTGTACATGGTAGGCT TTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTG CCCTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCG GTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTG CTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATC TGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCAC ACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCANAGCTGGCTTCCCACCTCCACCG TCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGA AGGCGGATGGCTCGTTCCAGAAGAAAATGGACTTGGCGACACAACAAGGCATTCATGAGT CGTACTACCGTGACATGATGGTGATGTTCGGCAAGTGGGAGTTTGACCCGATGAGCTTGC CGAAGCCGCCATGCCCTGTGCATATCTGGCAGGGCGACGAGGACGGGCTTGTGCCGGTGG TGTTGCAGAGATACCTCGTTAGCCGGCTCAGCTGGGCGAACTACCATGAGCTCCCCGGAA CCGGGCACTTCCTTTCTGCGGTTCCCGGGCTTGGAGACACCGTTCTTAGGACCATTTTCG GTTGAGTATATGTAGCAGTCAGAAGAAGCAACAGTTCAGAATGCTGATACTAAGTTATAG TGTCCCACCCGGTACATTACTTCGTTTAAATGGTAAGGCTGTTCGTTACTCGCTGATTAG CGATGATGATGATATAGATGAAAGGGCAGTGTAAAATGAGCTGCTCTGTTTTTTTTTTGG TTTTTTTGGTGTAAAATGGCGTGGCCCAGATGCTACCCAAAAATGTTCTTTGACCTTGGA AAGAAAGTGTAGTATTATACAATGTGGACTCTTTTGTTTAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 835
fasta sequence
                              [CAAGTTCTACGTCGTCGGCGTGTCCCTCGGCGGCCACGCCGTGTGGGGCGCGCTCAGGTACATCCCGGAGAGGATCGCCGGGGCGGCGATGATGGCGCCCGTGGTGAACTACTGGTGGCCCGGGTTCCCGGCGGAGGACGCCGCGGCGGCGTACGGCAGGCAGTCGTACGGCGACCAGTGGGCGCTCCGCGTGTCGCACCACGCCCCGGCCATCCTCCACTGGTGGATGGACCAGAGCTGGCTCCCCACCTCCACCGTCGTCGACAACACCACCTTCCTCCCCAACAAGCGCGACGCCGACATCCGCCGCACCCTCACCGCCGACGGCACCCTCCAAAAGAAGAAGGAGATGG-CG-ACG-CAGC-AAGGGATCAACGAGTCG-TACTACAGGG-AC-ATGA--CGGTG-ATG-TTCGGGAAGTGGGAGTTCGACCCGATGGCGCTGCCGGAGCCGCCG-TGCCCGGTGCACATCTGGCAGGGCGTCGAGGACGGCCTCGTCCCCGTCGCGCTGCAGCGGCACGTCGCCGGGAAGCTCGGCTGGGTCAGCTACCACGAGCTCCCCGGCACCGGCCACTTCCTCTCCGCCGTCCCCGGCCTCGGC-GATACCGTTCTCCGGACACTTTTCGGCTGATCAGCAACGATAAAATACAGAAGAAGAGTGATGCAAAAATACAGTAGAGTAGTACTACAGTGCTCAGTTAATCTCACATGACTACATGAGGCAGCATTCAGATTTTTTTTTCCTTTTATTTTGTAGCAGATTTGTGCTGCCAAGAAACCCTGCTAAGTGATAATGTTAACAAATATATATACTGA-TATTAGACTGTTCTAAAAACTGTCACAA]

[+] EMBL AK109013             [CAAGTTCTACGTCGTCGGCGTGTCCCTCGGCGGCCACGCCGTGTGGGGCGCGCTCAGGTACATCCCGGAGAGGATCGCCGGGGCGGCGATGATGGCGCCCGTGGTGAACTACTGGTGGCCCGGGTTCCCGGCGGAGGACGCCGCGGCGGCGTACGGCAGGCAGTCGTACGGCGACCAGTGGGCGCTCCGCGTGTCGCACCACGCCCCGGCCATCCTCCACTGGTGGATGGACCAGAGCTGGCTCCCCACCTCCACCGTCGTCGACAACACCACCTTCCTCCCCAACAAGCGCGACGCCGACATCCGCCGCACCCTCACCGCCGACGGCACCCTCCAAAAGAAGAAGGAGATGG CG ACG CAGC AAGGGATCAACGAGTCG TACTACAGGG AC ATGA  CGGTG ATG TTCGGGAAGTGGGAGTTCGACCCGATGGCGCTGCCGGAGCCGCCG TGCCCGGTGCACATCTGGCAGGGCGTCGAGGACGGCCTCGTCCCCGTCGCGCTGCAGCGGCACGTCGCCGGGAAGCTCGGCTGGGTCAGCTACCACGAGCTCCCCGGCACCGGCCACTTCCTCTCCGCCGTCCCCGGCCTCGGC GATACCGTTCTCCGGACACTTTTCGGCTGATCAGCAACGATAAAATACAGAAGAAGAGTGATGCAAAAATACAGTAGAGTAGTACTACAGTGCTCAGTTAATCTCACATGACTACATGAGGCAGCATTCAGATTTTTTTTTCCTTTTATTTTGTAGCAGATTTGTGCTGCCAAGAAACCCTGCTAAGTGATAATGTTAACAAATATATATACTGA TATT                        ]
[+] EMBL BI801982             [                                                                                                                                                                                                                                                                                                                                                              TGGCCGAACGTCAGCAAAGGGGTTCACGAGTTGTTACT TAGGGAACAATGAACCGGTGAATGTTTCGGGAA TGGGATTTCGACCCGATGGC CT CCGGA CCGCCGTTGCCCGGTGCACATCTGGCAGGTCGACGAGGAC GCCTCGTCCCCGTCGCGCTGCAGCGGCACGTCGCCGGGAAGCTCGGCTGGGTCAGCTACCACGAACTCCCCGGCACCGGCCACTTCCTCTCCGCCGTCCCCGGCCTCGGCAGACACCGTTCTCCGGACACTTTTCGGCTGATCAGCAACGATAAAATACAGAAGAAGAGTGATGCAAAAATACAGTAGAGTAGTACTACAGTGCTCAGTTAATCTCACATGACTACATGAGGCAGCATTCAGATTTTTTTTTCCTTTTATTTTGTAGCAGATTTGTGCTGCCAAGAAACCCTGCTAAGTGATAATGTTAACAAATATATATACTGA TATTAGACTGTTCTAAAAA         ]
[+] EMBL BM422020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccGACTACATGAGGCAGCATTCAGATTTTNTTTTCCTTTTATTTTGTACCAGATTTGTGCTGCCAAGAAACCCTGCTAAGTGATAATGTTAAC AATATATATACTGACCCTTAGACTGTTCTCATTACTGTCACAA]


>consensus_12394#1 CAAGTTCTACGTCGTCGGCGTGTCCCTCGGCGGCCACGCCGTGTGGGGCGCGCTCAGGTA CATCCCGGAGAGGATCGCCGGGGCGGCGATGATGGCGCCCGTGGTGAACTACTGGTGGCC CGGGTTCCCGGCGGAGGACGCCGCGGCGGCGTACGGCAGGCAGTCGTACGGCGACCAGTG GGCGCTCCGCGTGTCGCACCACGCCCCGGCCATCCTCCACTGGTGGATGGACCAGAGCTG GCTCCCCACCTCCACCGTCGTCGACAACACCACCTTCCTCCCCAACAAGCGCGACGCCGA CATCCGCCGCACCCTCACCGCCGACGGCACCCTCCAAAAGAAGAAGGAGATGGCGACGCA GCAAGGGATCAACGAGTCGTACTACAGGGACATGACGGTGATGTTCGGGAAGTGGGAGTT CGACCCGATGGCGCTGCCGGAGCCGCCGTGCCCGGTGCACATCTGGCAGGGCGTCGAGGA CGGCCTCGTCCCCGTCGCGCTGCAGCGGCACGTCGCCGGGAAGCTCGGCTGGGTCAGCTA CCACGAGCTCCCCGGCACCGGCCACTTCCTCTCCGCCGTCCCCGGCCTCGGCGATACCGT TCTCCGGACACTTTTCGGCTGATCAGCAACGATAAAATACAGAAGAAGAGTGATGCAAAA ATACAGTAGAGTAGTACTACAGTGCTCAGTTAATCTCACATGACTACATGAGGCAGCATT CAGATTTTTTTTTCCTTTTATTTTGTAGCAGATTTGTGCTGCCAAGAAACCCTGCTAAGT GATAATGTTAACAAATATATATACTGATATTAGACTGTTCTAAAAACTGTCACAA



consensusID : consensus_12394#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [CATAAACTTGATGTGATTTTCAGGAGGTGGCTGAGGAGTTGGGCGTGTACATGGTAGGCTTTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTGCCTTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCGGTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTGCTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATCTGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCACACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCAGAGCTGGCTTCCCACCTCCACCGTCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGAAGGCGG]

[+] EMBL CF310068             [CATAAACTTGATGTGATTTTCAGGAGGTGGCTGAGGAGTTGGGCGTGTACATGGTAGGCTTTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTGCCTTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCGGTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTGCTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATCTGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCACACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCAGAGCTGGCTTCCCACCTCCACCGTCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGAAGGCGG]


>consensus_12394#2 CATAAACTTGATGTGATTTTCAGGAGGTGGCTGAGGAGTTGGGCGTGTACATGGTAGGCT TTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTG CCTTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCG GTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTG CTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATC TGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCAC ACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCAGAGCTGGCTTCCCACCTCCACCG TCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGA AGGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12394#0      ATCGGCAGCCACACCGCATATCATACACTCATACACATTTCGCTCGACCGATCCGCGCGC 60
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      GCACGGAGAAGATGTGGGTGACGTCGATGCCGCAGGTGTGGGACGAGGAGGGGGTGGCGA 120
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      AGGGCAGCGTGGTGACGCCGGCGCCGGCGACGGCGCTGCTGGGGTCGCTCGCGGGATGGA 180
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      TGTCCCGCGCCGTCGAGCCGCCGGCGCCGAGGCCGTGCGGCACGGAGGGTGGCCCGCCGG 240
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      TGACCGCGACGAGGCTGAGGCTGCGCGACGGCCGCCACCTCGCCTACTGCGAGAGCGGCG 300
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      TCCCCAAGGAGGAGGCCCGCTTCAAGGTCGTCTTCTCCCACGGCTTCACCGGCTCCCGCG 360
consensus_12394#2      ----------------------------------------------------------CA 2
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      AGGACAGCGTCCGCGCCTCCCAGGAGGTGGCTGAGGAGTTGGGCGTGTACATGGTAGGCT 420
consensus_12394#2      TAAACTTGAT--GTGATTTTCAGGAGGTGGCTGAGGAGTTGGGCGTGTACATGGTAGGCT 60
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      TTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTG 480
consensus_12394#2      TTGATCGCGCTGGATATGGTGAGAGTGATCCAAACCCCAATCGGTCTGTGAAGAGCGCTG 120
consensus_12394#1      ------------------------------------------------------------
                                                                                   

consensus_12394#0      CCCTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCG 540
consensus_12394#2      CCTTCGATGTTGAGGAGCTTGCGGACGCTCTAGGATTAGGCCCCAAGTTCTATGTGATCG 180
consensus_12394#1      -------------------------------------------CAAGTTCTACGTCGTCG 17
                                                                  ********* **  ***

consensus_12394#0      GTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTG 600
consensus_12394#2      GTATCTCCCTCGGCTGCCATGCTGTTTGGGGCGCCCTCAAGTACATCCCAGAAAGGATTG 240
consensus_12394#1      GCGTGTCCCTCGGCGGCCACGCCGTGTGGGGCGCGCTCAGGTACATCCCGGAGAGGATCG 77
                       *  * ********* **** ** ** ******** **** ********* ** ***** *

consensus_12394#0      CTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATC 660
consensus_12394#2      CTGGAGCGGCCATGATGGCACCGGTGGTGAACTACTGGTGGCCGGGGTTCCCTACCGATC 300
consensus_12394#1      CCGGGGCGGCGATGATGGCGCCCGTGGTGAACTACTGGTGGCCCGGGTTCCCGGCGGAGG 137
                       * ** ***** ******** ** ******************** ********  * **  

consensus_12394#0      TGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCAC 720
consensus_12394#2      TGGCTGCCGAGGTGTACAACAAGCAGGAAGTGGGTGACCAGTGGGCGCTGCGTGTTTCAC 360
consensus_12394#1      ACGCCGCGGCGGCGTACGGCAGGCAGTCGTACGGCGACCAGTGGGCGCTCCGCGTGTCGC 197
                         ** ** * ** ****  ** ****      ** ************** ** ** ** *

consensus_12394#0      ACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCANAGCTGGCTTCCCACCTCCACCG 780
consensus_12394#2      ACCATGCACCCAGCATCCTCCACTGGTGGATGGAGCAGAGCTGGCTTCCCACCTCCACCG 420
consensus_12394#1      ACCACGCCCCGGCCATCCTCCACTGGTGGATGGACCAGAGCTGGCTCCCCACCTCCACCG 257
                       **** ** **   ********************* ** ******** *************

consensus_12394#0      TCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGA 840
consensus_12394#2      TCGTGGCTGGCACCACTCCCCTCCCCAACAAGCGTGATGCCGAGATCCGCAAAAATATGA 480
consensus_12394#1      TCGTCGACAACACCACCTTCCTCCCCAACAAGCGCGACGCCGACATCCGCCGCACCCTCA 317
                       **** *    ******   *************** ** ***** ******   *   * *

consensus_12394#0      AGGCGGATGGCTCGTTCCAGAAGAAAATGGACTTGGCGACACAACAAGGCATTCATGAGT 900
consensus_12394#2      AGGCGG------------------------------------------------------ 486
consensus_12394#1      CCGCCGACGGCACCCTCCAAAAGAAGAAGGAGATGGCGACGCAGCAAGGGATCAACGAGT 377
                         ** *                                                      

consensus_12394#0      CGTACTACCGTGACATGATGGTGATGTTCGGCAAGTGGGAGTTTGACCCGATGAGCTTGC 960
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      CGTACTACAGGGACATGACGGTGATGTTCGGGAAGTGGGAGTTCGACCCGATGGCGCTGC 437
                                                                                   

consensus_12394#0      CGAAGCCGCCATGCCCTGTGCATATCTGGCAGGGCGACGAGGACGGGCTTGTGCCGGTGG 1020
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      CGGAGCCGCCGTGCCCGGTGCACATCTGGCAGGGCGTCGAGGACGGCCTCGTCCCCGTCG 497
                                                                                   

consensus_12394#0      TGTTGCAGAGATACCTCGTTAGCCGGCTCAGCTGGGCGAACTACCATGAGCTCCCCGGAA 1080
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      CGCTGCAGCGGCACGTCGCCGGGAAGCTCGGCTGGGTCAGCTACCACGAGCTCCCCGGCA 557
                                                                                   

consensus_12394#0      CCGGGCACTTCCTTTCTGCGGTTCCCGGGCTTGGAGACACCGTTCTTAGGACCATTTTCG 1140
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      CCGGCCACTTCCTCTCCGCCGTCCCCGGCCTCGGCGATACCGTTCTCCGGACACTTTTCG 617
                                                                                   

consensus_12394#0      GTTGAGTATATGTAGCAGTCAGAAGAAGCAACAGTTCAGAATGCTGATACTAAGTTATAG 1200
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      GCTGATCA---GCAACGATAAAATACAGAAGAAGAGTGATGCAAAAATACAGTAGAGTAG 674
                                                                                   

consensus_12394#0      TGTCCCACCCGGTACATTACTTCGTTTAAATGGTAAGGCTGTTCGTTACTCGCTGATTAG 1260
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      TACTACAGTGCTCAGTTAATCTCACATGACTACATGAGGCAGCATTCAGATTTTTTTTTC 734
                                                                                   

consensus_12394#0      CGATGATGATGATATAGATGAAAGGGCAGTGTAAAATGAGCTGCTCTGTTTTTTTTTTGG 1320
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      CTTTTATTTTGTAGCAGATTTGTGCTGCCAAGAAACCCTGCTAAGTGATAATGTTAACAA 794
                                                                                   

consensus_12394#0      TTTTTTTGGTGTAAAATGGCGTGGCCCAGATGCTACCCAAAAATGTTCTTTGACCTTGGA 1380
consensus_12394#2      ------------------------------------------------------------
consensus_12394#1      ATATATATACTGATATTAGACTGTTCTAAAAACTGTCACAA------------------- 835
                                                                                   

consensus_12394#0      AAGAAAGTGTAGTATTATACAATGTGGACTCTTTTGTTTAAAAAAAAAAAAAAAAAAA 1438
consensus_12394#2      ----------------------------------------------------------
consensus_12394#1      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)