These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12396#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 771 fasta sequence [CCTCTCCTGCTGCGTGCGTCCCCAAAT-CAGGAGTCCT-CCAA-CCTCGCCACCGG-GCCGTCCG-CCCATCTCCGACGCCG-CT--CCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC-GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA-TTTGTTCCTGTAGAGGTCGGCAT-CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG-CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATAAACTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA] [+] EMBL AA750659 [CCTCTCCTGCTGCGTGCGTCCCCAAATACAGGAGTCCT CCAA CCTCGCCACCGG GCCGTCCG CCCATCTCCGACGCCG CT CCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGT CAAG CCAGCGCGAGGAAGGC GGTTGCTTATCGGGCAGT CA CGATGG ] [+] EMBL AK058837 [ CCTGCTGCGTGCGTCCCCAAAT CAGGAGTCCTCCCAACCCTCGCCACCGGCGCCGTCCGCCCCATCTCCGACGCCGCCTCCCCCCGAAGCGAAGCAGAGATGGATACATCAGGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGT ] [+] EMBL CA764860 [ GGACCTGCAGCATTCGTCAATGGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAACCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGT ] [+] EMBL BI797431 [ GGAGAGATTCTGAAGATGTTC TC GCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAA GCGGGTTGCTTATC GGCAGTCCACCGAT GTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCC ATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCC AC AAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGC AAGC AACC AAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTAAAAA ] [+] EMBL AU184015 [ ccGAGAGATTCTGAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCAAGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGATTTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTNTGNCAACAAAGCATGTCTNATGTTCATGATTTCTCTAGCCTTTAAGATCCGc ] [+] EMBL OSR06181A [ GAAGATGTTCGTCGGCCGAAGAGTGCGCACGGTGGTCCNCGCCCAGCGCGAGGAAGGCGGGTTGCTTATCGGGCAGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATCGCTGAACCCAATNAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGCCATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGT ] [+] EMBL AU031699 [ GTGGAGATTATTGGGATCGCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGNCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCATCCACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATGCTCTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA] [+] EMBL AU077567 [ CGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTAAAAAaaa ] [+] EMBL BI795057 [ TGCACAGATTTTGGTGAAAACTTC GATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTCTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACC AAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATAAAaaaaaaa ] [+] EMBL AU184016 [ GTGAAAACTTCGGATCCTGCACCATTCAATGGACTGTGCAAGCTTGCGAATGGCCAGATGAAGGA TTTGTTCCTGTAGAGGTCGGCAT CACATACAAGACATTNTGCCAACAAAGCATGTCTCATGTTCATGATTTCTCTAG CTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTACTTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGAGCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCTTGAAAGCTGTGTTTCTTGTTATGCTCTCCGGTGCATCTTGATGAAGTGAACTAGTATGATGCTTTCTGATGAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||