These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 3037 fasta sequence [ATCCTCCTCGCCGCGGCGGAGCACTAAACCCTAGCGAGAGATGCCGTCGCCTGCGGGGGGTCCGGTGGCCGTGGCGGCGGCGTCTGCGGCGGCGGCGGAGGCGCTGGGGATCTCGCCGGAGATGTACCCGACGGAGGACGACCTGGCGTACGAGGAGGAGATCCTGCGCGAGCCGTTCAAGCTCAAGGGGTGGTGGCGCTACCTCGTCGCCCGCGCCGCCGCGCCGTTCGCCAAGCGCGCCGTCATCTACGAGCGCGCGCTCAAGGCGCTCCCGGGGAGCTACAAGCTGTGGCACGCCTACCTCCGCGAGCGCCTCGACCACGCGCGCCCGCACCCCATCTCCCACCACGCCTACGCCTCCCTCAACAACACCTTCGAGCGCGCCCTCGCCACCATGCACAAGATGCCCCGCGTCTGGGTGCTCTACCTCACCTCGCTGCTCGACCAGCGCCTGCTCACGCGCGCGCGCCGCGCCTTCGACCGCGCGCTGCGCGCGCTCCCCGTCACGCAGCACGACCGCATCTGGCCGCTCTACCTCCGCCTCGCCTCGCTCCCGGCCTGCCCCGTCGAGACCTCGCTCCGCGTCTTCCGACGATACCTCCAGTACGACCCCTCCCACGCTGAGGACTTCATCGATTTCCTCATCTCCGCAAACCGCTGGCAGGAGGCCGCCGACCGCCTCGCGTCCGTGCTCAACGATGACGGCTTCCGCTCCGTCAAGGGTAAGACCCAGCACCAGCTCTGGCTTGAGCTCTGCGAAATCCTCACCAAGCATGCCGATGAGGTTGCGGGGCTCAAGGTGGACGCTATACTGCGGGGCGGCATTCGCAAGTTCACCGATGAGGTTGGCAAGCTGTGGACCTCCCTGGCCGATTACTACGTCAGAAGAACCTTGTATGAGAAGGCGAGGGATGTCTTCGAAGAGGGGGTTGCTTCGGTGATGACGGTGCAGGAATTCAGCGTGGTGTTTGAGGCGTACACACAATTCGAGCAGAGTATGCTTGCGGCAAAGCTGGAGGCAGCCGAGGAGGAGGGTGCGGGGAGTGAGGGGGAAGAGGAAGCGGGCAGGAAGAATGGGATGGACAAGCTGTCGAAGAAATTCCTCGCAGATTGCTGGCTGAATGATGAGGATGATACTGATTTGAGGCTGGCAAGGTTTGAGCGGCTGTTGGATCGCCGGCCAGAGCTCCTCAGCAGTGTCCTGCTGCGACAGAATCCGCATAATGTGGAGGAATGGCACAGGAGGGTGAAACTTTTTGAGAAGGATCCTACAAGGCAAGTAGCCACATATGTTGAAGCTGTGAAAACCGTAGACCCTATGAAGGCAGCTGGAAAACCACATACTCTATGGGTGGCATTCGCAAAGATGTATGAGAAACATAATCGTCTAGATAGTGCTGAAGAGATCTTTAAAAAAGCAACACAGGTGAACTACAAGGCAGTTGACCACTTAGCCAGTATTTGGTGTGAGTGGGCAGAGATGGAGCTGAGGCACAGTAATTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGAAAACAAGTATTTCGAAGATGC-GTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCA-TGTTAAAGACATTTGGGTGACCTACCTCACAAAGTTTGTAAGAAGGTATCAGAGAAGCAAGTTAGAGCGGGCAAGAGAACTGTTCGATGAAGCTGTCAAACAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGACTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAGCTATTTGGTGTTCCAAGAACAAGACAGATATATGAGCAAGCAATTGAATCTGGACTCCCAGACAGAGATGTCATGACAATGTGCATGAAATTTGCAGAACTTGAAAGAAACCTTGGAGAAATTGATCGTGCCCGTGCCATTTATGTCCACGCATCCAACTATGCTGATCCAAACTCTCATCCTGAATTTTGGAATAAATGGAATGAATTTGAGATTCAGCATGGTAACGAAGATACATTCAGGGAGATGCTTCGCATCAAGCGTACTGTGGCTGCTAGCCGCAGTCAGACTCATTTCATACTCCCAGAGTACTTGATGCAGAGGGACCAGAGGCTGAACCTCGATGAGGCAGTTGACACTCTGAAACGAGCCGGTGTTCCTGAGGATGAGATGGCTAACCTAGAAAGGCAACTAGCGCCAGGACCTTCCACGGCTCCACCAGCTCCAAGCACTGCTACTGCTCCTGCTAACCGGATGATGAACTTTGTCAGTGCTGGAGTGCAGGCACAGGCTGAGAGCAGCAGCAGGCAACAACAGGCTGCTGCTACTAACAATGAGGACATTGAGCTGCCCGATGAGAGCGACGAGGAGGAAGACGATGTCCAAATTGCGGAGAAGAGTGTTCCCGCTGCGGTGTTTGGAGAGCTCGGCAAGAGAGCTGCAGAGAACAGGGAGGAGGAAAGCTCTGGTGCCCAGGAGAATGAGCAGCTTGGCGCCCTTGAGAGGATTAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACACCATTAGCTGGTGCCCTTAACGATGTTGTAGCTGTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGCTCTTGTACAAGAATTTACGGGAGTTATTAATCCGTTGTTGATCTGCGACCATTTTTTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTATTCCCTCTTTTA] [+] EMBL AK066726 [ATCCTCCTCGCCGCGGCGGAGCACTAAACCCTAGCGAGAGATGCCGTCGCCTGCGGGGGGTCCGGTGGCCGTGGCGGCGGCGTCTGCGGCGGCGGCGGAGGCGCTGGGGATCTCGCCGGAGATGTACCCGACGGAGGACGACCTGGCGTACGAGGAGGAGATCCTGCGCGAGCCGTTCAAGCTCAAGGGGTGGTGGCGCTACCTCGTCGCCCGCGCCGCCGCGCCGTTCGCCAAGCGCGCCGTCATCTACGAGCGCGCGCTCAAGGCGCTCCCGGGGAGCTACAAGCTGTGGCACGCCTACCTCCGCGAGCGCCTCGACCACGCGCGCCCGCACCCCATCTCCCACCACGCCTACGCCTCCCTCAACAACACCTTCGAGCGCGCCCTCGCCACCATGCACAAGATGCCCCGCGTCTGGGTGCTCTACCTCACCTCGCTGCTCGACCAGCGCCTGCTCACGCGCGCGCGCCGCGCCTTCGACCGCGCGCTGCGCGCGCTCCCCGTCACGCAGCACGACCGCATCTGGCCGCTCTACCTCCGCCTCGCCTCGCTCCCGGCCTGCCCCGTCGAGACCTCGCTCCGCGTCTTCCGACGATACCTCCAGTACGACCCCTCCCACGCTGAGGACTTCATCGATTTCCTCATCTCCGCAAACCGCTGGCAGGAGGCCGCCGACCGCCTCGCGTCCGTGCTCAACGATGACGGCTTCCGCTCCGTCAAGGGTAAGACCCAGCACCAGCTCTGGCTTGAGCTCTGCGAAATCCTCACCAAGCATGCCGATGAGGTTGCGGGGCTCAAGGTGGACGCTATACTGCGGGGCGGCATTCGCAAGTTCACCGATGAGGTTGGCAAGCTGTGGACCTCCCTGGCCGATTACTACGTCAGAAGAACCTTGTATGAGAAGGCGAGGGATGTCTTCGAAGAGGGGGTTGCTTCGGTGATGACGGTGCAGGAATTCAGCGTGGTGTTTGAGGCGTACACACAATTCGAGCAGAGTATGCTTGCGGCAAAGCTGGAGGCAGCCGAGGAGGAGGGTGCGGGGAGTGAGGGGGAAGAGGAAGCGGGCAGGAAGAATGGGATGGACAAGCTGTCGAAGAAATTCCTCGCAGATTGCTGGCTGAATGATGAGGATGATACTGATTTGAGGCTGGCAAGGTTTGAGCGGCTGTTGGATCGCCGGCCAGAGCTCCTCAGCAGTGTCCTGCTGCGACAGAATCCGCATAATGTGGAGGAATGGCACAGGAGGGTGAAACTTTTTGAGAAGGATCCTACAAGGCAAGTAGCCACATATGTTGAAGCTGTGAAAACCGTAGACCCTATGAAGGCAGCTGGAAAACCACATACTCTATGGGTGGCATTCGCAAAGATGTATGAGAAACATAATCGTCTAGATAGTGCTGAAGAGATCTTTAAAAAAGCAACACAGGTGAACTACAAGGCAGTTGACCACTTAGCCAGTATTTGGTGTGAGTGGGCAGAGATGGAGCTGAGGCACAGTAATTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGAAAACAAGTATTTCGAAGATGC GTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCA TGTTAAAGACATTTGGGTGACCTACCTCACAAAGTTTGTAAGAAGGTATCAGAGAAGCAAGTTAGAGCGGGCAAGAGAACTGTTCGATGAAGCTGTCAAACAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGACTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAGCTATTTGGTGTTCCAAGAACAAGACAGATATATGAGCAAGCAATTGAATCTGGACTCCCAGACAGAGATGTCATGACAATGTGCATGAAATTTGCAGAACTTGAAAGAAACCTTGGAGAAATTGATCGTGCCCGTGCCATTTATGTCCACGCATCCAACTATGCTGATCCAAACTCTCATCCTGAATTTTGGAATAAATGGAATGAATTTGAGATTCAGCATGGTAACGAAGATACATTCAGGGAGATGCTTCGCATCAAGCGTACTGTGGCTGCTAGCCGCAGTCAGACTCATTTCATACTCCCAGAGTACTTGATGCAGAGGGACCAGAGGCTGAACCTCGATGAGGCAGTTGACACTCTGAAACGAGCCGGTGTTCCTGAGGATGAGATGGCTAACCTAGAAAGGCAACTAGCGCCAGGACCTTCCACGGCTCCACCAGCTCCAAGCACTGCTACTGCTCCTGCTAACCGGATGATGAACTTTGTCAGTGCTGGAGTGCAGGCACAGGCTGAGAGCAGCAGCAGGCAACAACAGGCTGCTGCTACTAACAATGAGGACATTGAGCTGCCCGATGAGAGCGACGAGGAGGAAGACGATGTCCAAATTGCGGAGAAGAGTGTTCCCGCTGCGGTGTTTGGAGAGCTCGGCAAGAGAGCTGCAGAGAACAGGGAGGAGGAAAGCTCTGGTGCCCAGGAGAATGAGCAGCTTGGCGCCCTTGAGAGGATTAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACACCATTAGCTGGTGCCCTTAACGATGTTGTAGCTGTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGCTCTTGTACAAGAATTTACGGGAGTTATTAATCCGTTGTTGATCTGCGACCATTTTTTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTATTCCCTCTTTTA] [+] EMBL AK101483 [ TCCTCCTCGCCGCGGCGGAGCACTAAACCCTAGCGAGAGATGCCGTCGCCTGCGGGGGGTCCGGTGGCCGTGGCGGCGGCGTCTGCGGCGGCGGCGGAGGCGCTGGGGATCTCGCCGGAGATGTACCCGACGGAGGACGACCTGGCGTACGAGGAGGAGATCCTGCGCGAGCCGTTCAAGCTCAAGGGGTGGTGGCGCTACCTCGTCGCCCGCGCCGCCGCGCCGTTCGCCAAGCGCGCCGTCATCTACGAGCGCGCGCTCAAGGCGCTCCCGGGGAGCTACAAGCTGTGGCACGCCTACCTCCGCGAGCGCCTCGACCACGCGCGCCCGCACCCCATCTCCCACCACGCCTACGCCTCCCTCAACAACACCTTCGAGCGCGCCCTCGCCACCATGCACAAGATGCCCCGCGTCTGGGTGCTCTACCTCACCTCGCTGCTCGACCAGCGCCTGCTCACGCGCGCGCGCCGCGCCTTCGACCGCGCGCTGCGCGCGCTCCCCGTCACGCAGCACGACCGCATCTGGCCGCTCTACCTCCGCCTCGCCTCGCTCCCGGCCTGCCCCGTCGAGACCTCGCTCCGCGTCTTCCGACGATACCTCCAGTACGACCCCTCCCACGCTGAGGACTTCATCGATTTCCTCATCTCCGCAAACCGCTGGCAGGAGGCCGCCGACCGCCTCGCGTCCGTGCTCAACGATGACGGCTTCCGCTCCGTCAAGGGTAAGACCCAGCACCAGCTCTGGCTTGAGCTCTGCGAAATCCTCACCAAGCATGCCGATGAGGTTGCGGGGCTCAAGGTGGACGCTATACTGCGGGGCGGCATTCGCAAGTTCACCGATGAGGTTGGCAAGCTGTGGACCTCCCTGGCCGATTACTACGTCAGAAGAACCTTGTATGAGAAGGCGAGGGATGTCTTCGAAGAGGGGGTTGCTTCGGTGATGACGGTGCAGGAATTCAGCGTGGTGTTTGAGGCGTACACACAATTCGAGCAGAGTATGCTTGCGGCAAAGCTGGAGGCAGCCGAGGAGGAGGGTGCGGGGAGTGAGGGGGAAGAGGAAGCGGGCAGGAAGAATGGGATGGACAAGCTGTCGAAGAAATTCCTCGCAGATTGCTGGCTGAATGATGAGGATGATACTGATTTGAGGCTGGCAAGGTTTGAGCGGCTGTTGGATCGCCGGCCAGAGCTCCTCAGCAGTGTCCTGCTGCGACAGAATCCGCATAATGTGGAGGAATGGCACAGGAGGGTGAAACTTTTTGAGAAGGATCCTACAAGGCAAGTAGCCACATATGTTGAAGCTGTGAAAACCGTAGACCCTATGAAGGCAGCTGGAAAACCACATACTCTATGGGTGGCATTCGCAAAGATGTATGAGAAACATAATCGTCTAGATAGTGCTGAAGAGATCTTTAAAAAAGCAACACAGGTGAACTACAAGGCAGTTGACCACTTAGCCAGTATTTGGTGTGAGTGGGCAGAGATGGAGCTGAGGCACAGTAATTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGAAAACAAGTATTTCGAAGATGC GTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCA TGTTAAAGACATTTGGGTGACCTACCTCACAAAGTTTGTAAGAAGGTATCAGAGAAGCAAGTTAGAGCGGGCAAGAGAACTGTTCGATGAAGCTGTCAAACAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGACTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAGCTATTTGGTGTTCCAAGAACAAGACAGATATATGAGCAAGCAATTGAATCTGGACTCCCAGACAGAGATGTCATGACAATGTGCATGAAATTTGCAGAACTTGAAAGAAACCTTGGAGAAATTGATCGTGCCCGTGCCATTTATGTCCACGCATCCAACTATGCTGATCCAAACTCTCATCCTGAATTTTGGAATAAATGGAATGAATTTGAGATTCAGCATGGTAACGAAGATACATTCAGGGAGATGCTTCGCATCAAGCGTACTGTGGCTGCTAGCCGCAGTCAGACTCATTTCATACTCCCAGAGTACTTGATGCAGAGGGACCAGAGGCTGAACCTCGATGAGGCAGTTGACACTCTGAAACGAGCCGGTGTTCCTGAGGATGAGATGGCTAACCTAGAAAGGCAACTAGCGCCAGGACCTTCCACGGCTCCACCAGCTCCAAGCACTGCTACTGCTCCTGCTAACCGGATGATGAACTTTGTCAGTGCTGGAGTGCAGGCACAGGCTGAGAGCAGCAGCAGGCAACAACAGGCTGCTGCTACTAACAATGAGGACATTGAGCTGCCCGATGAGAGCGACGAGGAGGAAGACGATGTCCAAATTGCGGAGAAGAGTGTTCCCGCTGCGGTGTTTGGAGAGCTCGGCAAGAGAGCTGCAGAGAACAGGGAGGAGGAAAGCTCTGGTGCCCAGGAGAATGAGCAGCTTGGCGCCCTTGAGAGGATTAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACACCATTAGCTGGTGCCCTTAACGATGTTGTAGCTGTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGCTCTTGTACAAGAATTTACGGGAGTTATTAATCCGTTGTTG ] [+] EMBL AU181666 [ GCGCCCTCGCCACCATGCACAAGATGCCCCGCGTCTGGGTGCTCTACCTCACCTCGCTGCTCGACCAGCGCCTGCTCACGCGCGCGCGCCGCGCCTTCGACCGCGCGCTGCGCGCGCTCCCCGTCACGCAGCACGACCGCATCTGGCCGCTCTACCTCCGCCTCGCCTCGCTCCCGGCCTGCCCCGTCGAGACCTCGCTCCGCGTCTTCCGACGATACCTCCAGTACGACCCCTCCCACGCTGAGGACTTCATCGATTTCCTCATCTCCGCAAACCGCTGGCAGGAGGCCGCCGACCGCCTCGCGTCCGTGCTCAACGATGACGGCTTCCGCTCCGTCAAGGGTAAGACCCAGCACCAGCTCTGGCTTGAGCTCTGCGAAATCCTCACCAAGCATGCCGATGAGGTTGCGGGGCTCAAGGTGGACGC ] [+] EMBL CB631245 [ TCGCAGATTGCTGGCTGAATGATGAGGATGATACTGATTTGAGGCTGGCAAGGTTTGAGCGGCTGTTGGATCGCCGGCCAGAGCTCCTCAGCAGTGTCCTGTTGCGACAGAATCCACATAATGTGGAGGAATGGCACAGGAGGGTGAAACTTTTTGAGAAGGATCCTACAAGGCAAGTAGCCACATATGTTGAAGCTGTGAAAACCGTAGACCCTATGAAGGCAGCTGGAAAACCACATACTCTATGGGTGGCATTCGCAAAGATGTATGAGAAACATAATCGTCTAGATAGTGCTGAAGAGATCTTTAAAAAAGCAACACAGGTGAACTACAAGGCAGTTGACCACTTAGCCAGTATTTGGTGTGAATGGGCAGAGATGGAGCTGAGGCACAATAATTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCTCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGAAAACAAGTATTTTGAAGATGC GTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCA TGTTAAAGACATTTGGGTGACCTACCTCACAAAGTTTGTAAGAAGGTATCAGAGAAGCAAGTTAGAGCGGGCAAGAGAACTGTTCGATGAAG ] [+] EMBL CF303101 [ GATCCTACAAGGCAAGTAGCCACATATGTTGAAGCTGTGAAAACCGTAGACCCTATGAAGGCAGCTGGAAAACCACATACTCTATGGGTGGCATTCGCAAAGATGTATGAGAAACATAATCGTCTAGATAGTGCTGAAGAGATCTTTAAAAAAGCAACACAGGTGAACTACAAGGCAGTTGACCACTTAGCCAGTATTTGGTGTGAGTGGGCAGAGATGGAGCTGAGGCACAGTAATTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGAAAACAAGTATTTCGAAGATGC GTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCA ] [+] EMBL CB671034 [ CACAGTAATTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGAAAACAAGTATTTCGAAGATGC GTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCA TGTTAAAGACATTTGGGTGACCTACCTCACAAAGTTTGTAAGAAGGTATCAGAGAAGCAAGTTAGAGCGGGCAAGAGAACTGTTCGATGAAGCTGTCAAACAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGACTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAGCTATTTGGTGTTCCAAGAACAAGACAGATATATGAGCAAGCAATTGAATCTGGACTCCCAGACAGAGATGTCATGACAATGTGCATGAAATTTGCAGAACTTGAAAGAAACCTTGGAGAAATTGATCGTGCCCGTGCCATTTATGTCCACGCATCCAACTATGCTGATCCAA ] [+] EMBL AU062694 [ CACAGTAATTTTNACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAAGAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAAACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGCAGTTTATGAGAGAATATTGGATTTACGAATTTCCACTCCCCAAATAGTTCTCAATTATGCATATCTTCTTGAGGTNAACAAGTATTTCGAAGATGCNGTTTAAAGTGTATGAGCGTGGTGTGAAAATTTTTAAATATCCCCATTGTTAAAG ] [-] EMBL CB631246 [ ATTGATCGTGCCCGTGCCATTTATGTCCACGCATCCAACTATGCCGATCCAAACTCTCATCCTGAATTTTGGAATAAATGGAATGAATTTGAGATTCAGCATGGTAACGAAGATACATTCAGGGAGATGCTTCGCATCAAGCGTACTGTGGCTGCTAGCCGCAGTCAGACTCATTTCATACTCCCGGAGTACTTGATGCAGAGGGACCAGAGGCTGAACCTCGATGAGGCAGTTGACACTCTGAAACGAGCCGGTGTTCCTGAGGATGAGATGGCTAACCTAGAAAGGCAACTAGCGCCAGGACCTTCCACGGCTCCACCAGTTCCAAGCACTGCTACTGCTCCTGCTAACCGGATGATGAACTTTGTCAGTGCTGGAGTGCAGGCACAGGCTGAGAGCAGCAGCAGGCAACAACAGGCTGCTGCTGCTAACAATGAGGACATTGAGCTGCCCGATGAGAGCGACGAGGAGGAAGACGATGTCCAAATTGCGGAGAAGAGTGTTCCTGCTGCGGTGTTTGGAGAGCTCGGCAAGAGAGCTGCAGAGAACAGGGAGGAGGAAAGCTCTGGTGCCCAGGAGAATGAGCAGCTTGGCGCCCTTGAGAGGATCAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACACCATTAGCTGGTGCTCTTAACGATGTTGTAGCTGTAACAACTTGTAAACATGATTCTGAGTGGTGTTTTTGCTCTTGTACAAGAATTTACGGAAGTTATTAATCCGTTGTTGATCTGCGACCATTTTTTCGTaaa ] consensusID : consensus_12399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CTAAAAGGAANTGGNGNGCCCTTCAAGTTCACNTTTCAAGNATNGTATTTTNCTGTTAACCGGNNGATGANTTTTNAGNGTGGGGGGNCGGCATAGGTTGGNGCAGCAGCCAGGCCAACAACAAGNTGTTGTTGCTAACAATGGGGATNAGCGNGCTNCCTGATGAGAGCGAACGAGGGAGGAAGACGATGACCAAAATTGCGGAAGAAGAGTTTTCCCNGCTGCGGTGTTTGGAGAGCTTGGCAACACAGCTGCAGAGAACAGGGAGGAGGAAAGNTNTGGTGCCCAGGAGAATGGGCAGCTTGGCGCCCTTGAGAGGATCAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACAGAGCTGGTGCCCTTGTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGCTCTTGTACAAGAATTTACGGGAGTTATTAATCCGTTATTGATCTGCGACCATTTTTTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTATTCTCTTCTAGGCTAGAAGGCAAAAAAAAAAAAAAAAAAA] [-] EMBL AA752109 [CTAAAAGGAANTGGNGNGCCCTTCAAGTTCACNTTTCAAGNATNGTATTTTNCTGTTAACCGGNNGATGANTTTTNAGNGTGGGGGGNCGGCATAGGTTGGNGCAGCAGCCAGGCCAACAACAAGNTGTTGTTGCTAACAATGGGGATNAGCGNGCTNCCTGATGAGAGCGAACGAGGGAGGAAGACGATGACCAAAATTGCGGAAGAAGAGTTTTCCCNGCTGCGGTGTTTGGAGAGCTTGGCAACACAGCTGCAGAGAACAGGGAGGAGGAAAGNTNTGGTGCCCAGGAGAATGGGCAGCTTGGCGCCCTTGAGAGGATCAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACAGAGCTGGTGCCCTTGTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGCTCTTGTACAAGAATTTACGGGAGTTATTAATCCGTTATTGATCTGCGACCATTTTTTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTATTCTCTTCTAGGCTAGAAGGCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12399#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GTTACCAAATGCTTTTTGGGTATAACTGGCAATCAGAAATTTTGTCCTTGCTTCATACGAATAAGTTCAGGGCAGATTCTTGTTGCGCCTGCTTTCTTCTTCCTTTAAGAACCTTGTCTCTGCTTGCTGATATCATGTCATGCGATATTTTGCATTTGCTTGCTTGCTTGTTTAGATTCCAAACCTTTGGTTGATTATTTCGTGTTCCTTTTTCCTGCATCGATGCTGTTTTGAAAATGATGTTTTTCCTATATTGCTTCAGTACTTACATTTTGTTTTGTTTGATCAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGACTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAG] [+] EMBL AU197736 [GTTACCAAATGCTTTTTGGGTATAACTGGCAATCAGAAATTTTGTCCTTGCTTCATACGAATAAGTTCAGGGCAGATTCTTGTTGCGCCTGCTTTCTTCTTCCTTTAAGAACCTTGTCTCTGCTTGCTGATATCATGTCATGCGATATTTTGCATTTGCTTGCTTGCTTGTTTAGATTCCAAACCTTTGGTTGATTATTTCGTGTTCCTTTTTCCTGCATCGATGCTGTTTTGAAAATGATGTTTTTCCTATATTGCTTCAGTACTTACATTTTGTTTTGTTTGATCAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGACTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12399#0 ATCCTCCTCGCCGCGGCGGAGCACTAAACCCTAGCGAGAGATGCCGTCGCCTGCGGGGGG 60 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TCCGGTGGCCGTGGCGGCGGCGTCTGCGGCGGCGGCGGAGGCGCTGGGGATCTCGCCGGA 120 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GATGTACCCGACGGAGGACGACCTGGCGTACGAGGAGGAGATCCTGCGCGAGCCGTTCAA 180 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GCTCAAGGGGTGGTGGCGCTACCTCGTCGCCCGCGCCGCCGCGCCGTTCGCCAAGCGCGC 240 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CGTCATCTACGAGCGCGCGCTCAAGGCGCTCCCGGGGAGCTACAAGCTGTGGCACGCCTA 300 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCTCCGCGAGCGCCTCGACCACGCGCGCCCGCACCCCATCTCCCACCACGCCTACGCCTC 360 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCTCAACAACACCTTCGAGCGCGCCCTCGCCACCATGCACAAGATGCCCCGCGTCTGGGT 420 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GCTCTACCTCACCTCGCTGCTCGACCAGCGCCTGCTCACGCGCGCGCGCCGCGCCTTCGA 480 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCGCGCGCTGCGCGCGCTCCCCGTCACGCAGCACGACCGCATCTGGCCGCTCTACCTCCG 540 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCTCGCCTCGCTCCCGGCCTGCCCCGTCGAGACCTCGCTCCGCGTCTTCCGACGATACCT 600 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCAGTACGACCCCTCCCACGCTGAGGACTTCATCGATTTCCTCATCTCCGCAAACCGCTG 660 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GCAGGAGGCCGCCGACCGCCTCGCGTCCGTGCTCAACGATGACGGCTTCCGCTCCGTCAA 720 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GGGTAAGACCCAGCACCAGCTCTGGCTTGAGCTCTGCGAAATCCTCACCAAGCATGCCGA 780 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TGAGGTTGCGGGGCTCAAGGTGGACGCTATACTGCGGGGCGGCATTCGCAAGTTCACCGA 840 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TGAGGTTGGCAAGCTGTGGACCTCCCTGGCCGATTACTACGTCAGAAGAACCTTGTATGA 900 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GAAGGCGAGGGATGTCTTCGAAGAGGGGGTTGCTTCGGTGATGACGGTGCAGGAATTCAG 960 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CGTGGTGTTTGAGGCGTACACACAATTCGAGCAGAGTATGCTTGCGGCAAAGCTGGAGGC 1020 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 AGCCGAGGAGGAGGGTGCGGGGAGTGAGGGGGAAGAGGAAGCGGGCAGGAAGAATGGGAT 1080 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GGACAAGCTGTCGAAGAAATTCCTCGCAGATTGCTGGCTGAATGATGAGGATGATACTGA 1140 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TTTGAGGCTGGCAAGGTTTGAGCGGCTGTTGGATCGCCGGCCAGAGCTCCTCAGCAGTGT 1200 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCTGCTGCGACAGAATCCGCATAATGTGGAGGAATGGCACAGGAGGGTGAAACTTTTTGA 1260 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GAAGGATCCTACAAGGCAAGTAGCCACATATGTTGAAGCTGTGAAAACCGTAGACCCTAT 1320 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GAAGGCAGCTGGAAAACCACATACTCTATGGGTGGCATTCGCAAAGATGTATGAGAAACA 1380 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TAATCGTCTAGATAGTGCTGAAGAGATCTTTAAAAAAGCAACACAGGTGAACTACAAGGC 1440 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 AGTTGACCACTTAGCCAGTATTTGGTGTGAGTGGGCAGAGATGGAGCTGAGGCACAGTAA 1500 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TTTTGACAAGGCTATTGAGCTGATGAGGCAAGCTACTGCAGAACCCTCTGTTGAGGTTAA 1560 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GAGGCGAGCTGCTGCTGAGGGGGATGAACCTGTCCAATTGAAAGTACATAAATCCCTGAA 1620 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 ACTGTGGAGCTTCTATGTGGACCTGGAGGAAAGTCTTGGAACATTGGAATCAACTCGTGC 1680 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 AGTTTATGAGAGAATATTGGATTTACGAATTGCCACTCCCCAAATAGTTCTCAATTATGC 1740 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 ATATCTTCTTGAGGAAAACAAGTATTTCGAAGATGCGTTTAAAGTGTATGAGCGTGGTGT 1800 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GAAAATTTTTAAATATCCCCATGTTAAAGACATTTGGGTGACCTACCTCACAAAGTTTGT 1860 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 AAGAAGGTATCAGAGAAGCAAGTTAGAGCGGGCAAGAGAACTGTTCGATGAAGCTGTCAA 1920 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 ACAGGCTCCTCCACAAGAAAAGAAGGTATTGTATTTGCAGTATGCTAAGCTGGAGGAAGA 1980 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CTATGGCCTTGCGAAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAA 2040 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CAGCGAAAAGATGAGTATGTACGAAATATATATTGCACGGGCTGCGGAGCTATTTGGTGT 2100 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TCCAAGAACAAGACAGATATATGAGCAAGCAATTGAATCTGGACTCCCAGACAGAGATGT 2160 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CATGACAATGTGCATGAAATTTGCAGAACTTGAAAGAAACCTTGGAGAAATTGATCGTGC 2220 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CCGTGCCATTTATGTCCACGCATCCAACTATGCTGATCCAAACTCTCATCCTGAATTTTG 2280 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GAATAAATGGAATGAATTTGAGATTCAGCATGGTAACGAAGATACATTCAGGGAGATGCT 2340 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 TCGCATCAAGCGTACTGTGGCTGCTAGCCGCAGTCAGACTCATTTCATACTCCCAGAGTA 2400 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CTTGATGCAGAGGGACCAGAGGCTGAACCTCGATGAGGCAGTTGACACTCTGAAACGAGC 2460 consensus_12399#1 ------------------------------------------------------------ consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 CGGTGTTCCTGAGGATGAGATGGCTAACCTAGAAAGGCAACTAGCGCCAGGACCTTCCAC 2520 consensus_12399#1 ----------------------------CTAAAAGG--AANTGG----NGNGCCCTTCAA 26 consensus_12399#2 ------------------------------------------------------------ consensus_12399#0 GGCTCCACCAGCTCCAAGCACTGCTACTGCTCCTGCTAACCGGATGATGAACTTTGTCAG 2580 consensus_12399#1 G--TTCACN--TTTCAAGNATNG-TATT-TTNCTGTTAACCGGNNGATGANTTTTN--AG 78 consensus_12399#2 ---------------GTTACCAAATGCTTTTTGGGTATAACTGGCAATCAGAAATTTTGT 45 * * * * * * * ** * * consensus_12399#0 TGCTGGAGTGCAGGCACAGGCTGAGAGCAGCAGCAGG--CAACAACAGGCTGCTGCTACT 2638 consensus_12399#1 NG-TGGGGGGNCGGCATAGGTTG-GNGCAGCAGCCAGGCCAACAACAAGNTGTTGTTGCT 136 consensus_12399#2 CCTTGCTTCATACGAATAAGTTCAGGGCAGATTCTTG-----TTGCGCCTGCTTTCTTCT 100 ** * * * * * * **** * * * * * ** consensus_12399#0 AACAATGAGGA-CATTGAGCTGCCCGATGAGAGCGA-CGAGG-AGGAAGACGATGTCCAA 2695 consensus_12399#1 AACAATGGGGATNAGCGNGCTNCCTGATGAGAGCGAACGAGGGAGGAAGACGATGACCAA 196 consensus_12399#2 TCCTTTAAGAACCTTGTCTCTGCTTGCTGATATCATGTCATG--------CGATATT--- 149 * * * * ** * * *** * * * * **** consensus_12399#0 A-TTGCGGA-GAAGAGTGTTCCCG-CTGCGGTGTTTGGAGAGCTCGGCAAGAGAGCTGCA 2752 consensus_12399#1 AATTGCGGAAGAAGAGTTTTCCCNGCTGCGGTGTTTGGAGAGCTTGGCAACACAGCTGCA 256 consensus_12399#2 --TTGC-----ATTTGCTTGCTTGCTTGTTTAGATTCCAAACCTTTGGTTGATTATTTCG 202 **** * * * * ** * ** * * ** * * * * consensus_12399#0 GAGAACAGGGAGGAGGAAAGCTCTGGTGCCCAGGAGAATGAGCAGCTTGGCGCCCTTGAG 2812 consensus_12399#1 GAGAACAGGGAGGAGGAAAGNTNTGGTGCCCAGGAGAATGGGCAGCTTGGCGCCCTTGAG 316 consensus_12399#2 TGTTCCTTTTTCCTGCATCGATGCTGTTTTGAAAATGATGTTTTTCCTATATTGCTTCAG 262 * * * * * ** * * *** * * *** ** consensus_12399#0 AGGATTAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACACCATTAGCTGGT 2872 consensus_12399#1 AGGATCAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACA----GAGCTGGT 372 consensus_12399#2 TAC-TTACATTTTGTTTTGTTTGATCAGGCTCC-TCCACAAGAAAAGA-----AGGTATT 315 * * * * ***** * * * ** * * * * * ** * * consensus_12399#0 GCCCTTAACGATGTTGTAGCTGTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGC 2932 consensus_12399#1 GCCCTT---------------GTAACAACTTGTAAACATGATTTTGAGTGGTGTTTTTGC 417 consensus_12399#2 GTATTT---------------GCAGTA--TGCTAAGCTGGAGGAAGACTATGGCCTTGCG 358 * ** * * * * *** * ** ** * * ** consensus_12399#0 TCTTGTACAA-GAATTTACG----GGAGTTATTAATCCGTTGTTGATCTGCGACCATTTT 2987 consensus_12399#1 TCTTGTACAA-GAATTTACG----GGAGTTATTAATCCGTTATTGATCTGCGACCATTTT 472 consensus_12399#2 AAACGTGCAATGAATGTATACGACGAAGCTGTAAGGGCTGTTCCTAACAGCGAAAAGATG 418 ** *** **** ** * ** * * * * * * * **** * * consensus_12399#0 TTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTATTCCCTCTTTTA---------- 3037 consensus_12399#1 TTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTATTCTCTTCTAGGCTAGAAGGCA 532 consensus_12399#2 AGTATGTACGAAATATATATTGCACGGGCTGCGGAG------------------------ 454 ***** ** *** * ** * ** consensus_12399#0 ------------------ consensus_12399#1 AAAAAAAAAAAAAAAAAA 550 consensus_12399#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||