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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1475 fasta sequence
[GTCAAAAATCTCTTCCAATTTGAATATCTCTCCTCCCAAACGGTCGGCTCCGGAGCGGCGCCCGGACGAACACATGGCGGCGGCGATGGCGACGACGGCGGCGGCGGCGGCGGAAGAGGCGGTGGTGGCGCTCGACAAGGAGACTCTGATGCTGATGGGGTGCGGCGACGCCCCGCCGGCTGCGCCGTGCGCGGAGTGGGAGACGTTCAAGGAGAACGTGCGGCCGCTGAAGCGCGGCCGCAACGTGGGCCTCCTCAACCGCGCCCTCAAGGCGCACGCCGACCCCGCCCAGCGCGCCGCCCTCCTCGCCGCCCGGAGGAAAATGATCGAGGCAATCGACGAATACAGCGGCGAGGATCCGCTCCAACCATGGATAGACTGCATCAAATGGGTTCAGGAGTCGTTTCCGACAGGCGGGGATTGCTCCGGGTTGGTGGTGATCTACGAGCAGTGCGTGCGTGCCTTCTGGCACGACGACCGCTACAAGAACGATCTCCGCTACCTCAAAGTGTGGCTGGAATATGCGGGGAATTGTGCTGATTCCGAGGTGATATTCAGGTTCCTGGAGGCCAACCAGATTGGTCAGAGCCATACCAATTACTACTTGTCCTATGCGTCGGTAATGGAGTCCAAGAACAAGCTAAAGAAAGCTAATGAGATTTTTAACCTTGGTATTGCCAGGAAAGCAAAGCCTGTGGAGAAGTTGGAAACTACATACAGGGCATTTCTTCAGAGATCATCCAAAAAGAAGGCACATCCTGAGGATGACACAACTACTGATGATCATCCAGTACGCAACTTTGGGACTGTCTTGAACCGTGGTGAAATCAGAGGCCAGCATGCAGAAAACTCTCACCTGGTGAAAACTCTGCAAAGAGTTGATGTCAATAGGCCACTTGCAGTTTACACAGATGAGAATTCGTTACCTAGTCATGGCCTTGCTAGAACCAGGAGCAACAACACGGCCTGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACATGAGGCCTGCTAAATGGACATCACACAAGATTCCTCAGAAGGTTGGATCGAGGGCAGCAGTTCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCGAGGAACCAGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCTGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCAGGAAACTGAACTGCTTATGGAGAATCCTCTGCGGAATTTCCCTCTAACCAGCCTTAGATAATCAATATTTATGTGGTGTAATGCTGTATTTCGATCTTCTTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCTAAAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGTTGTAATATTGCACAATAATTTGATTGATAAATCCTCGACGAGGGTTGGGGGTGCTTAATTTGG]
[+] EMBL AK060499 [GTCAAAAATCTCTTCCAATTTGAATATCTCTCCTCCCAAACGGTCGGCTCCGGAGCGGCGCCCGGACGAACACATGGCGGCGGCGATGGCGACGACGGCGGCGGCGGCGGCGGAAGAGGCGGTGGTGGCGCTCGACAAGGAGACTCTGATGCTGATGGGGTGCGGCGACGCCCCGCCGGCTGCGCCGTGCGCGGAGTGGGAGACGTTCAAGGAGAACGTGCGGCCGCTGAAGCGCGGCCGCAACGTGGGCCTCCTCAACCGCGCCCTCAAGGCGCACGCCGACCCCGCCCAGCGCGCCGCCCTCCTCGCCGCCCGGAGGAAAATGATCGAGGCAATCGACGAATACAGCGGCGAGGATCCGCTCCAACCATGGATAGACTGCATCAAATGGGTTCAGGAGTCGTTTCCGACAGGCGGGGATTGCTCCGGGTTGGTGGTGATCTACGAGCAGTGCGTGCGTGCCTTCTGGCACGACGACCGCTACAAGAACGATCTCCGCTACCTCAAAGTGTGGCTGGAATATGCGGGGAATTGTGCTGATTCCGAGGTGATATTCAGGTTCCTGGAGGCCAACCAGATTGGTCAGAGCCATACCAATTACTACTTGTCCTATGCGTCGGTAATGGAGTCCAAGAACAAGCTAAAGAAAGCTAATGAGATTTTTAACCTTGGTATTGCCAGGAAAGCAAAGCCTGTGGAGAAGTTGGAAACTACATACAGGGCATTTCTTCAGAGATCATCCAAAAAGAAGGCACATCCTGAGGATGACACAACTACTGATGATCATCCAGTACGCAACTTTGGGACTGTCTTGAACCGTGGTGAAATCAGAGGCCAGCATGCAGAAAACTCTCACCTGGTGAAAACTCTGCAAAGAGTTGATGTCAATAGGCCACTTGCAGTTTACACAGATGAGAATTCGTTACCTAGTCATGGCCTTGCTAGAACCAGGAGCAACAACACGGCCTGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACATGAGGCCTGCTAAATGGACATCACACAAGATTCCTCAGAAGGTTGGATCGAGGGCAGCAGTTCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCGAGGAACCAGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCTGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCAGGAAACTGAACTGCTTATGGAGAATCCTCTGCGGAATTTCCCTCTAACCAGCCTTAGATAATCAATATTTATGTGGTGTAATGCTGTATTTCGATCTTCTTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCTAAAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGTTGTAATATTGCACAATAATTTGATTGATAAATCCTCGACGAGGGTTGGGGGTGCTTAATTTGG]
consensusID : consensus_1240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1234 fasta sequence
[GAGCCCCCTCTTCGCCATTTCGCCTGCTCCGTGATCGCCGTCGCGCACCATTTCGCCGCCCTGCCCCGCCCCAGCAACGATTGCGTGCGGGATCTCAAACCCTAGGGTTCCCTCGGCGCTGACGGGAGCAACCTCTCGCCGCCGACGCCGCTATCGCCCGGCAGATTCGTTGACGATGGGGCGCTCACGGCCCTCGCCTCCGCCTCCTCACGCGAGCGAGGCCAGAGACATTGACAGCAAGAGTATTGGCCCCAGCAGTAATGGCTCTGATGATGAGAAAGTGAACTGGAAGGCTCTAAAAGATGTCACATACAAAGAGTGTTTTATTCATTCTGGTTTGAAGATCTTATCCATTCTCTCTGATATCCGTCTGCATCCCCACGAGCGGTGGAATATTTGTCAGAAGGTAGGATCGAGGGCTGCAATTCTGCAAAATCTTGTCAACCCCATTGAGGTGTTCGTAGATGATGAATGTGCTGGGAAACCAGCTCCCCAAGTGCCAAAGAGTTCAAAACCATCTATTATGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCGGGAAATTGAACTGCTTATGGAGAACCCACAGCGCAACTTCCCTCTAACCAACTTCTGTCTTGACCCCTCAAAGTTGATTAAATCTAGCACTATGGTTTCCCCTGTCATTTATGCGCAACGTCGCCTGTCATATCTGATGAATGGCATGGGAAGACAACAAGCTCTCGGTGATGCAATGCAAGCTTGGAGACGGCCAACCACTTTTAATTTTCTGGATGCTGCTCTGCCTTCTTTAGGCATGGAAATTGAATCTGAAGAAGCAATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCAGCGCTCTCCTCTACGCAAGAAGGAGATTGCCCTCCGAGTCCCAATTGCCTTGTTCATCACCATCACTTATGCACCAAGCAAGCGTACGCAACAAAGGCTGTTTGTTTTCAGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTACGCTGATCTGACTGCGCGATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCCAATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGTTGACAACTTGCTATCCTGCTGAACAAATATTATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAATTCGAGAGCATTGATATGATGGAGGT]
[+] EMBL AK073191 [GAGCCCCCTCTTCGCCATTTCGCCTGCTCCGTGATCGCCGTCGCGCACCATTTCGCCGCCCTGCCCCGCCCCAGCAACGATTGCGTGCGGGATCTCAAACCCTAGGGTTCCCTCGGCGCTGACGGGAGCAACCTCTCGCCGCCGACGCCGCTATCGCCCGGCAGATTCGTTGACGATGGGGCGCTCACGGCCCTCGCCTCCGCCTCCTCACGCGAGCGAGGCCAGAGACATTGACAGCAAGAGTATTGGCCCCAGCAGTAATGGCTCTGATGATGAGAAAGTGAACTGGAAGGCTCTAAAAGATGTCACATACAAAGAGTGTTTTATTCATTCTGGTTTGAAGATCTTATCCATTCTCTCTGATATCCGTCTGCATCCCCACGAGCGGTGGAATATTTGTCAGAAGGTAGGATCGAGGGCTGCAATTCTGCAAAATCTTGTCAACCCCATTGAGGTGTTCGTAGATGATGAATGTGCTGGGAAACCAGCTCCCCAAGTGCCAAAGAGTTCAAAACCATCTATTATGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAGCGGGAAATTGAACTGCTTATGGAGAACCCACAGCGCAACTTCCCTCTAACCAACTTCTGTCTTGACCCCTCAAAGTTGATTAAATCTAGCACTATGGTTTCCCCTGTCATTTATGCGCAACGTCGCCTGTCATATCTGATGAATGGCATGGGAAGACAACAAGCTCTCGGTGATGCAATGCAAGCTTGGAGACGGCCAACCACTTTTAATTTTCTGGATGCTGCTCTGCCTTCTTTAGGCATGGAAATTGAATCTGAAGAAGCAATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCAGCGCTCTCCTCTACGCAAGAAGGAGATTGCCCTCCGAGTCCCAATTGCCTTGTTCATCACCATCACTTATGCACCAAGCAAGCGTACGCAACAAAGGCTGTTTGTTTTCAGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTACGCTGATCTGACTGCGCGATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCCAATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGTTGACAACTTGCTATCCTGCTGAACAAATATTATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAATTCGAGAGCATTGATATGATGGAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1240#0 GTCAAAAATCTCTTCCAATTTGAATATCTCTCCTCCCAAACGGTCGGCTCCGGAGCGGCG 60
consensus_1240#1 ---------------------GAGCCCCCTCTTCGCCATTTCGCCTGCTCCGTGATCGCC 39
** * *** * * ****** **
consensus_1240#0 CCCGGACGAACACATGGCGGCGGCGATGGCGACGACGGCGGCGGCGGCGGCGGAAGAGGC 120
consensus_1240#1 GTCGCGC-ACCATTTCGCCGCCCTGCC-----CCGCCCCAGCAACGATTGCGT-----GC 88
** * * ** * ** ** * * * * ** ** *** **
consensus_1240#0 GGTGGTGGCGCTCGACAAGGAGACTCTGATGCTGATGGGGTGCGGCGACGCCCCGCCGGC 180
consensus_1240#1 GG-GATCTCAAACCCTAGGGTTCCCTCGGCGCTGACGGGA----GCAACCTCTCGCCGCC 143
** * * * * * ** * * ***** *** ** ** * ***** *
consensus_1240#0 TGCGCCGTGCGCGGAGTGGGAGACGTTCAAGGAGAACGTGCGGCCGCTGAAGCGCGGCCG 240
consensus_1240#1 GACGCCGC-TATCGCCCGGCAGA--TTCGTTGACGATG---GGGCGCT----CACGGCCC 193
***** * ** *** *** ** * * ** **** * *****
consensus_1240#0 CAACGTGGGCCTCCTCAACCGCGCCCTCAAGGCGCACGCCGACCCCGCCCAGCGCGCCGC 300
consensus_1240#1 TCGCCTCCGCCTCCTCACGCGAGC----GAGGCCAGAGACATTGACAGCAAGAGTATTGG 249
* * ********* ** ** **** * * * * ** * *
consensus_1240#0 CCTCCTCGCCGCCCGGAGGAAAATGATCGAGGCAATCGACGAATACAGCGGCGAGGATCC 360
consensus_1240#1 CCCCA--GCAGTAATGGCTCTGATGAT-GAGAAAGTGAACTGGAAGGCTCTAAAAGAT-- 304
** * ** * * ***** *** * * ** * * ***
consensus_1240#0 GCTCCAACCATGGATAGACTGCATCAAATGGGTTCAGGAGTCGTTTCCGA-CAGGCGGGG 419
consensus_1240#1 GTCACATACAAAGAGTGTTTTATTCATTCTGGTTTGAAGATCTTATCCATTCTCTCTGAT 364
* ** ** ** * * *** **** ** * *** * * *
consensus_1240#0 ATTGCTCCGGGTTGGTGGTGATCTACGAGCAGTGCG-TGCGTGCCTTCTGGCACGA-CGA 477
consensus_1240#1 ATCCGTCTGCATC--------CCCACGAGCGGTGGAATATTTGTCAGAAGGTAGGATCGA 416
** ** * * * ****** *** * ** * ** * ** ***
consensus_1240#0 CCGCTACAAGAACGATCTCCGCTACCTCAA-AGTGTGGCTGGAATATGCGGGGAATTGTG 536
consensus_1240#1 GGGCTGCAAT-----TCTGCAAAATCTTGTCAACCCCATTGAGGTGTTCGTAGA----TG 467
*** *** *** * * ** * ** * * ** ** **
consensus_1240#0 CTGATTCCGAGGTGATATTCAGGTTCCTGGAGGCCAACCAGATTGGTCAGAGCCATACCA 596
consensus_1240#1 ATGAATGTGCTGGGA-AACCAGCTCCCCAAGTGCCAA--AGAGT--TCAAAACCAT---- 518
*** * * * ** * *** * ** ***** *** * *** * ****
consensus_1240#0 ATTACTACTTGTCCTATGCGTCGGTAATGGAGTCCAAGAACAAGCTAAAGAAAGCTAATG 656
consensus_1240#1 -CTATTATGAAGCTTAGGCA---------------AGCAACAAGC-AGAAACCTCAAGCG 561
** ** * ** ** * ******* * * * * * *
consensus_1240#0 AGATTTTTAACCTTGGTATTGCCAGGAAAGCAAAGCCTGTGGAGAAGTTGGAAACTACAT 716
consensus_1240#1 GGAAATTGAACTGC----TTATGGAGAACCCACAGC-------------GCAACTTCCCT 604
** ** *** ** *** ** *** * ** * * *
consensus_1240#0 ACAGGGCATTTCTTCAGAGATCATCCAAAAAGAAGGCACATCCTGAGGATGACACAACTA 776
consensus_1240#1 CTAACCAACTTCTGTCTTGACCCCTCAAAGTTGAT-TAAATCTAG----CACTATGGTTT 659
* * **** ** * **** * * *** * * *
consensus_1240#0 CTGATGATCATCCAGTACGCAACTTTGGGACTGTCTTGAACCGTGGTGAAATCAGAGGCC 836
consensus_1240#1 CCCCTG-TCATTTA-TGCGCAACGTCGC--CTGTCATA---TCTGATGAA---TGGCATG 709
* ** **** * * ****** * * ***** * ** **** *
consensus_1240#0 AGCATGCAGAAAACTCTCACCTGGTGAAAACTCTGCAAAGAGTTGATGTCAATAGGCCAC 896
consensus_1240#1 GGAAGACAACAAGCTCTCGG-TGATGCAA----TGCAAG--CTTGGAGACGGCCAACCAC 762
* * ** ** ***** ** ** ** ***** *** * * ****
consensus_1240#0 TTGCAGTTTACACAGATGAGAATTCG--TTACCTAGTCATGGCCTTGCTAGAACCAGGAG 954
consensus_1240#1 TTTTAATTTTC-TGGATGCTGCTCTGCCTTCTTTAGGCATGGA---AATTGAATCTGAAG 818
** * *** * **** * * ** *** ***** * *** * * **
consensus_1240#0 CAACAACACGGCCTGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACAT 1014
consensus_1240#1 AAGCAATCGAGGGTGCATCAAATTTTCAGCTTGAGCTAAAGAGAAGGGGGATGTTCTCCA 878
* *** * ** * ** * * *** * *** ** * *
consensus_1240#0 GAGGCCTGCTAAATGGACATCACACAAGATTCCTCAGAAGGTTGGATCGAGGGCAGCAGT 1074
consensus_1240#1 GCGCTCTCCTCTACGCAA---GAAGGAGATTGCCCTCCGAGTC---CCAATTGCCTT-GT 931
* * ** ** * * * * ***** * * ** * * ** **
consensus_1240#0 TCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCGAGGAACC 1134
consensus_1240#1 TCATCACCATCACTTATGCACCAAGCAAG----CGTACGCAACAAAGGCTGTTTGTTTTC 987
*** * ** ** ** *** *** **** ** ** ** * *
consensus_1240#0 AGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCT--GAAGCTTAGGCAAGCAACA 1192
consensus_1240#1 AGGCAGCGCTCTTCAAAAGAATTTCCATTTATGGATTGCACGAGGTCTCAGGTTGCTAC- 1046
** * * * ***** * * ** *** ** * * * ** **
consensus_1240#0 AGCAGAAACCTCAAGCAGGAAACTGAACTGCTTATG--GAGAATCCTCTGCGGAATTTCC 1250
consensus_1240#1 -GCTGA----TCTGACTGCGCGATAACTTTCATATGCCGGGAATTCATGCTTAAATAGCC 1101
** ** ** * * * * * * **** * **** * *** **
consensus_1240#0 CTCTAACCAGCCTTAGATAAT--CAATATTTATGTGGTGTAATGCTGTATTTCGATCTTC 1308
consensus_1240#1 AATTAAGCCTGATCAGAATGTAACAAAATTCTTGTGGCAAGTTGACAACTTGCTATCCTG 1161
*** * * *** * *** *** ***** ** ** * *** *
consensus_1240#0 TTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCTA 1368
consensus_1240#1 CTGAACAAATAT-TATCCTCAGTATTGTCGTCCTGACTTGTGGGTGAATTCGAGAGCATT 1220
* ** *** * * * *** ** * * * * * * * ** *
consensus_1240#0 AAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGTTGTAATATTGCACAAT 1428
consensus_1240#1 GATATGATGGAGGT---------------------------------------------- 1234
* * * * ***
consensus_1240#0 AATTTGATTGATAAATCCTCGACGAGGGTTGGGGGTGCTTAATTTGG 1475
consensus_1240#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||