These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1088 fasta sequence [ACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTGTGAAAGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAGCTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGATATGTTTCACTCCTTCAGTCCATGTGCAGTGTC] [+] EMBL CF321849 [ACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTGAAGGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTTCAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGGTCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGG ] [-] EMBL AU173301 [ TTTTGTGAAAGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAA ] [-] EMBL AU173200 [ TTTTGTGAAAGAATTGAATTGGGATTGCCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTNCAACTTCAACGATCTTCGAGTCCTTTGAAGCTCTTGCGGGGGTCGCAACACT ] [+] EMBL CB679601 [ GAAAGAATTGAATTGGGATTGCCGTTTCTGGACAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACATCGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGTTTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGGCGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACANGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATT ] [-] EMBL CB679600 [ GCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATGGTGACTGATGAGCAGTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCAACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAGCT ] [-] EMBL CA999678 [ ATCATCTTGTCAGAAGCTCGATGTCGGCTCCAACTTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGG ] [-] EMBL AU173199 [ TGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAGATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAG ] [-] EMBL CF321848 [ ATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAAAAAATCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGATATGTTTCACTCCTTCAGTCCATGTGCAGTGTC] [-] EMBL OSR20702A [ TTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGC ] consensusID : consensus_12409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence [CCGGGGAGGATACATAAAGCTCCTGCGATGCGGCCAGGTATAAAACAGATATACAATTGCCTCAAAAGGGGAGGACTAAACGGTTGGAGTTTGGCCATTTATATCTGCAAAGTGAGGTGGCCCACTTCACGATTTTAGTCTTTAAGTCTTCGGGTTCGCACACTTTAACATCAGATCAAGAGCAATGGCTTTCACAAGGCCATTCAACATGAGAGACCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCGTCTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCTTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGCTATGGCAGCTAATCTGGACAACTCGATCTCAGACAAAGATAGTTCCTTCTGTTCCAAATTAGATGAAAGTGTTGCATTGAATTCAGAGAGTTTCTTTAGAATTCCCTCAAACTGAGCCGTCTCAAATGTCAGCATTCCATTCTTTGGTATGTGCTTGAAAGTTGGTTTAGGAGCACTAACAGTTGAAGACGCTGATTGCCCAGGTACATATGCATTAGCTCCAGTGT] [-] EMBL BE039650 [CCGGGGAGGATACATAAAGCTCCTGCGATGCGGCCAGGTATAAAACAGATATACAATTGCCTCAAAAGGGGAGGACTAAACGGTTGGAGTTTGGCCATTTATATCTGCAAAGTGAGGTGGCCCACTTCACGATTTTAGTCTTTAAGTCTTCGGGTTCGCACACTTTAACATCAGATCAAGAGCAATGGCTTTCACAAGGCCATTCAACATGAGAGACCGATTGCAACAAGGGCCCGGTATTTCGAATCAGCGTCTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAGTATCTGTGCTTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAGAAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGAATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAAGTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAACCTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGTGGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTGTGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACTTGTATGATAAAATGATGTTTCTTTCAATACTTTTGCTATGGCAGCTAATCTGGACAACTCGATCTCAGACAAAGATAGTTCCTTCTGTTCCAAATTAGATGAAAGTGTTGCATTGAATTCAGAGAGTTTCTTTAGAATTCCCTCAAACTGAGCCGTCTCAAATGTCAGCATTCCATTCTTTGGTATGTGCTTGAAAGTTGGTTTAGGAGCACTAACAGTTGAAGACGCTGATTGCCCAGGTACATATGCATTAGCTCCAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12409#0 ACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTGTGAAAGAATTGAATTGGGATTG 60 consensus_12409#1 ------------------------------------------------------------ consensus_12409#0 CCGTTTCTGGATAAAAGTGTATAGGTGCAGCTATCTAATCATAAACCCACGTAAAAACAT 120 consensus_12409#1 ------------------------------------------------------------ consensus_12409#0 CGGCTTAAAAACAAACCTTTTGCTCAGGCCGGGTGATTCAAGCTCAAAAACACAAGCTGT 180 consensus_12409#1 ------------------------------------------------------------ consensus_12409#0 TTGTTACAAGAAGGCGCAACGAGCAACCGAGTTGCAAACCTGACCCTACCCCACGACCGG 240 consensus_12409#1 ------------------------------------------------------------ consensus_12409#0 CGCCACCAGGTGCACGGGCTAAACACTAAACTGCCTCCCTGCACGAGTGACGGCTCCATG 300 consensus_12409#1 ---------------------------------CCGGGGAGGATACATAAAGCTCCTGCG 27 ** * * * * * * * consensus_12409#0 GTGACTGATGAGCA-GTATCATGAACAATGTCGCCTCCAGCAAGGGGGGACGTACTACCA 359 consensus_12409#1 ATG-CGGCCAGGTATAAAACAGATATACAATTGCCTC----AAAAGGGGAGG----ACTA 78 ** * * * * * ** * * * ***** ** ***** * ** * consensus_12409#0 ACCGTCTGCGAGTCTTCGGCCATCTTATCATCTTGTCAGAAGCTCGATGTCGGCTCCAAC 419 consensus_12409#1 AACGGTTG-GAGTTT--GGCCATTT-------ATATCTGCAAAGTGAGGTGG---CCCAC 125 * ** ** **** * ****** * * ** * * ** ** * ** ** consensus_12409#0 TTCAGCGATCTTCGAGTCCTTTGAAGCTCTTGCGGTGTTCGCAACACTCTTAACATCAAG 479 consensus_12409#1 TTCA-CGATTTT--AGTCTTT--AAGTCTTCG---GGTTCGCA-CACT-TTAACATCA-G 174 **** **** ** **** ** *** * * ******* **** ********* * consensus_12409#0 ATCAAGAGCAATGGACTTCACAAGGCCATTCAACATGAGAGAGCCGATTGCAACAAGGGC 539 consensus_12409#1 ATCAAGAGCAATGGCTTTCACAAGGCCATTCAACATGAGAGA-CCGATTGCAACAAGGGC 233 ************** ************************** ***************** consensus_12409#0 CCGGTATTTCGAATCAGCAACTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAG 599 consensus_12409#1 CCGGTATTTCGAATCAGCGTCTTGGGTGTCGTCTTCAGCGATTTCAAGGGCAGCAGAAAG 293 ****************** **************************************** consensus_12409#0 TATCTGTGCCTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAG 659 consensus_12409#1 TATCTGTGCTTGACTTTGTTCATCCTTTGATTCGATTGAAAGAACAGCATAATTGAGTAG 353 ********* ************************************************** consensus_12409#0 AAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGA 719 consensus_12409#1 AAGTGTGGAATATGCCAGGTGAGCATTCTTGCTAAAAGTTGTCTTACAGCTTGATACTGA 413 ************************************************************ consensus_12409#0 ATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAA 779 consensus_12409#1 ATCAATAATCTCCATGCCATGGATTCTCAACCATTGGTGCAAGCATGGCTTGTCAAATAA 473 ************************************************************ consensus_12409#0 GTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAAC 839 consensus_12409#1 GTTAGTAACTGCTTTAAGGGTTGTAAGCACATTTGGTGGCTGCACAGGTGGCGTTACAAC 533 ************************************************************ consensus_12409#0 CTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGT 899 consensus_12409#1 CTTATGGAAAGTCTCGGCAAGTACATCATTTCCACTTTCAATAGCCTTGAGAAGTAGAGT 593 ************************************************************ consensus_12409#0 GGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAGCTGGAAACATCATTTG 959 consensus_12409#1 GGCTCCATCAGGATGCAACACAAACATCCTCAGAAAATCAATAACTGGAAACATCATTTG 653 ******************************************* **************** consensus_12409#0 TGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACT 1019 consensus_12409#1 TGTAGGCCAAGACTTCAACATTTTCAGCAGCAAGGTCATGTCAGCATCTGCAAGCTTACT 713 ************************************************************ consensus_12409#0 TGTATGATAAAATGATGTTTCTTTCAATACTTTTGATATGTT---TCACTCCTTCAGTCC 1076 consensus_12409#1 TGTATGATAAAATGATGTTTCTTTCAATACTTTTGCTATGGCAGCTAATCTGGACAACTC 773 *********************************** **** * * ** * consensus_12409#0 ATGTGCAGTGTC------------------------------------------------ 1088 consensus_12409#1 GATCTCAGACAAAGATAGTTCCTTCTGTTCCAAATTAGATGAAAGTGTTGCATTGAATTC 833 *** consensus_12409#0 ------------------------------------------------------------ consensus_12409#1 AGAGAGTTTCTTTAGAATTCCCTCAAACTGAGCCGTCTCAAATGTCAGCATTCCATTCTT 893 consensus_12409#0 ------------------------------------------------------------ consensus_12409#1 TGGTATGTGCTTGAAAGTTGGTTTAGGAGCACTAACAGTTGAAGACGCTGATTGCCCAGG 953 consensus_12409#0 ----------------------- consensus_12409#1 TACATATGCATTAGCTCCAGTGT 976 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||