cluster # 1241

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Oryza sativa
cluster # 1241 cluster # 1241 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1241#0 length = 507 sequences # 1

consensus_1241#1 length = 465 sequences # 1

consensusID : consensus_1241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [TTTTTTTTTTTTTTTTTAAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGTTAAAAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGG]

[+] EMBL CF281593             [TTTTTTTTTTTTTTTTTAAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGTTAAAAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGG]




>consensus_1241#0
TTTTTTTTTTTTTTTTTAAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGT
TAAAAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCAT
ATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGG
CAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACC
TGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGAT
GATACGGACAAAGGCATCGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACC
TGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCG
TAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGG
CAAGGCACCCACTTGGATCGAAGCAGG

consensusID : consensus_1241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTTTAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA]

[+] EMBL CF299597             [GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTTTAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA]




>consensus_1241#1
GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATC
CATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTAT
ATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTT
TAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATT
GAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATAT
CATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGC
GATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGA
TGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1241#0      ------------------------------------------------------------
consensus_1241#1      GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATC 60
                                                                                  

consensus_1241#0      ------------------------------------------------------------
consensus_1241#1      CATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTAT 120
                                                                                  

consensus_1241#0      -------------------------------------------TTTTTTTTTTTTTTTTT 17
consensus_1241#1      ATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTT 180
                                                                 * *  *  * **  ***

consensus_1241#0      AAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGTTAAAAGCAGAGGCCATT 77
consensus_1241#1      TAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATT 240
                       *********************** **************** **   *************

consensus_1241#0      GAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATAT 137
consensus_1241#1      GAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATAT 300
                      ************************************************************

consensus_1241#0      CATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGC 197
consensus_1241#1      CATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGC 360
                      ************************************************************

consensus_1241#0      GATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGA 257
consensus_1241#1      GATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGA 420
                      ***************************** ******************************

consensus_1241#0      TGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCAT 317
consensus_1241#1      TGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA--------------- 465
                      ********************************** **********               

consensus_1241#0      CGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCA 377
consensus_1241#1      ------------------------------------------------------------
                                                                                  

consensus_1241#0      GCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCT 437
consensus_1241#1      ------------------------------------------------------------
                                                                                  

consensus_1241#0      GTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGA 497
consensus_1241#1      ------------------------------------------------------------
                                                                                  

consensus_1241#0      TCGAAGCAGG 507
consensus_1241#1      ----------