These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1302 fasta sequence [TTTTTTTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA-CTGGTTGCTAAATGCTAAAAGTTCTGT-AGATAGTAAAACCAGCT-AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGCGTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTG-ATTTCACCACTTCACCA-AGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGAACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTGCCACCCCCCAACAGAACCATAATTAACTGCTAAAATATTTACACCATCCATGTGGATAACAATATGTTCATCCAAACTTTCACGTGGTATGCATCTAGCTTTGATTGAGGAAACAACATAGTCTTTTCTTGCAGGATCCAACACATTAGACAGCAACCTAATTGAATAAAAACCATCTTCATCCAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAGCTTAGTGAGAGTCTGGGATCCGTGCGCGGAGGACTTGAGGCGGGCGGAGAAGGACCCCGCGGGGACGAACCCGGCGCCGAGGTCGTGCTCGAGCGAGNACTGCACGGCGCTGGACTCCGCCGCCGCNGNGCTGCTGTCCCCGGGCCGCCGGCGGGAGGAGGAGACCGCCGCCGCAGCGGGCGCGGGCGGCCCTGGCGTGGGGCGTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAGGAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGGCGAGGGAGAGGGAGAGGGCGAGGAGGAGGAGGAGGGGGAGGAGGCGAGGGCGGCGCGGCGCGGCCATGGCTTCTGGTCGGGGGAG] [-] EMBL AU032295 [TTTTTTTTTTGTGAAATTGTATGTT CCATTACCAGTGATGTATTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAACCTGGTTGCTAAATGCNAAAAGTTCTGTAAGATAGTAAAACCAGCTAAGCAAATNGCCTTTGGATCTAAGCAG ] [+] EMBL CF327011 [ TTTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTA ] [-] EMBL CF327012 [ TTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTG GGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAA ] [-] EMBL AU164476 [ TTTTTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA CTGGTTGCTAAATGCTAAAAGTTCTGT AGATAGTAAAACCAGCT AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGCGTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGA ] [+] EMBL CB683883 [ TGTTGCCATTACCAGTGATGCCTTCAATGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA CTGGTTGCTAAATGCTAAAAGTTCTGT AGATAGTAAAACCAGCT AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGCGTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTG ATTTCACCACTTCACCA AGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGAACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTGCCACCCCCCAACAGAACC ] [+] EMBL BI306547 [ AGTGATGTCTTCACTGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGACAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCAGTAAACTCTCAGGAACTGACTTAGAATGGACAGCTGATAATAGAGCTTTTGCACTGCACATTGATTGTACTCTGTCAA CTGGTTGCTAAATGCTAAAAGTTCTGT AGATAGTAAAACCAGCT AGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTATTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTG ATTTCACCACTTCACCA AGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC ] [-] EMBL CF303999 [ TCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTGNATTTCACCACTTCACCANAGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGAACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTG CACCCGCCAACAGAACCATAATTAACTGCTAAAATATTTACACCATCCATGTGGATAACAATATGTTCATCCAAACTTTCACGTGGTATGCATCTAGCTTTGATTGAGGAAACAACATAGTCTTTTCTTGCAGGATCCAACACATTAGACAGCAACCTAATTGAATAAAAACCATCTTCATCCAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAGCTTAGTGAGAGTCTGGGATCCGTGCGCGGAGGACTTGAGGCGGGCGGAGAAGGACCCCGCGGGGACGAACCCGGCGCCGAGGTCGTGCTCGAGCGAG ] [-] EMBL AU032294 [ CCAACACATTAAACAGCAACCTAATTGAAT AAAACCATCTTCATCCAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAGCTTAGTGAGAGTCTGGGAGCCGTGCGCGGAGGACTTNAGGCAGGCGGAGAAGGACCCCGCGGGGACGAACCCGGCGCCGAGNTCGTGCTCGAGCGAGNACTGCACGGCGCTGGACTCCGCCGCCGCNGNGCTGCTGTCCCCGGGCCGCCGGCGGGAGGAGGAGACCGCCGCCGCAGCGGGCGCGGGCGGCCCTGGCGTGGGGCGTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAGGAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGG ] [-] EMBL CB683491 [ CCTCCGCCGCGCTGTTGTCCCCGGGCCGCCGGCGGGAGGAGGACACCGCCTCCGCCGCGGGCGCGGTCGGCCCTGGCGTGGGCCTTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAGGAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGGCGAGGGAGAGGGAGAGGGCGAGGAGGAGGAGGAGGGGGAGGAGGCGAGGGCGGCGCGGCGCGGCCATGGCTTCTGGTCGGGGGAG] consensusID : consensus_12418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [GCTTGCGCCCGCTCTCGCTTCTACTCTTCTTTGCATGGTGCTCGCCCATGATGGCCTGTTGTGGGTCGCGCGCTTCAACGACATTCATTTTCGGCGCTAAATGATCCGGCCAGAGAACAGTTGCGCACTACCTAAAAACTAAAGACTTCCCTTACCACCTGACTGCTTAATGATGCAGACCAACTCTCTTGAACTGACTTAGAATGGACACGCTGATAATACAACCTTTCGCACTGCACATGGTAATGCCACTCTGGCCACTGGTTGCTACCTGCTAAAAGCCATTTGGATCTACAAACACCTAGGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTATTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC] [+] EMBL BI306207 [GCTTGCGCCCGCTCTCGCTTCTACTCTTCTTTGCATGGTGCTCGCCCATGATGGCCTGTTGTGGGTCGCGCGCTTCAACGACATTCATTTTCGGCGCTAAATGATCCGGCCAGAGAACAGTTGCGCACTACCTAAAAACTAAAGACTTCCCTTACCACCTGACTGCTTAATGATGCAGACCAACTCTCTTGAACTGACTTAGAATGGACACGCTGATAATACAACCTTTCGCACTGCACATGGTAATGCCACTCTGGCCACTGGTTGCTACCTGCTAAAAGCCATTTGGATCTACAAACACCTAGGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTATTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGAGCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGCATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATCCAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCGGCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12418#0 ------------TTTTTTTTTTGTGAAATTGTATGTTGCCATTACCAGTGATGTCTTCAC 48 consensus_12418#1 GCTTGCGCCCGCTCTCGCTTCTACTCTTCTTTGCATGGTGCTCGCCCATGATGGCCT-GT 59 * * ** * * * * * * ** ***** * * consensus_12418#0 TGAAATATTGTAACATGTTTACGAGTATAAAATCGGGCAGTAAATTGCCGGTACAAAAGA 108 consensus_12418#1 TGTGG-GTCGCG-CGCTTCAACGACATTCATTTTCGGCGCTAAATGATCCGGCCAGAGAA 117 ** * * * * **** * * * *** ***** * * ** * * consensus_12418#0 CAAGTGTGGAAAAGCGGAAAACAAAAGTAAGTTCTTAGGACCTGATAAGCTAAGGATGCA 168 consensus_12418#1 CAGTTGCGCACTACCTAAAAACTAAAGACTTCCCTTACCACCTGACTGCTTAATGATGCA 177 ** ** * * * * ***** **** **** ****** *** ****** consensus_12418#0 G-TAAACTCTCAGGAACTGACTTAGAATGGACA-GCTGATAATAGAGCTTTT-GCACTGC 225 consensus_12418#1 GACCAACTCTCTTGAACTGACTTAGAATGGACACGCTGATAATACAACCTTTCGCACTGC 237 * ******* ******************** ********** * * *** ******* consensus_12418#0 ACAT--TGATTGTACTCTGTCAACTGGTTGCTAAATGCTAAAAGTTCTGTAGATAGTAAA 283 consensus_12418#1 ACATGGTAATGCCACTCTGGCCACTGGTTGCTACCTGCTAAAAGCCATTTGGATC-TACA 296 **** * ** ****** * *********** ********* * * *** ** * consensus_12418#0 ACCAGCTAG-CAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTGC 342 consensus_12418#1 AACACCTAGGCAAATTGCCTTTGGATCTAAGCAGACCAAGTACTGCTATGATACAACTTA 356 * ** **** ************************************************ consensus_12418#0 GTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGA 402 consensus_12418#1 TTATTACTACAAGCGAGATAGAAACCAAATAGGCAGCACAGATATCATCTTCTCCTTGGA 416 *********************************************************** consensus_12418#0 GCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGC 462 consensus_12418#1 GCAGCATTTGGTGCCCTTTGAGCTCCAGGTTGGCCCTGCCCTCCAGCTTGCTCCTCCGGC 476 ************************************************************ consensus_12418#0 ATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATC 522 consensus_12418#1 ATGTTCGCTGCTGCCGTGACAGCATTCATGACAATGAGACCAAGAGGAATGATGTACATC 536 ************************************************************ consensus_12418#0 CAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCG 582 consensus_12418#1 CAATATTTAGCCCAGAAAGACTTCTCAGGTGATTTCACCACTTCACCAAGACCATTTTCG 596 ************************************************************ consensus_12418#0 GCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTCTTCAGA 642 consensus_12418#1 GCTTCTATTAACTGATCTACAAATGATGGAGTTCTTGGTGCTTGTTCAGAAGTC------ 650 ****************************************************** consensus_12418#0 ACAGTGTATGAATTGAATACCCACTTTGATGGCATTTTCACTGGACGGGGATATGTGCCA 702 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 CCCCCCAACAGAACCATAATTAACTGCTAAAATATTTACACCATCCATGTGGATAACAAT 762 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 ATGTTCATCCAAACTTTCACGTGGTATGCATCTAGCTTTGATTGAGGAAACAACATAGTC 822 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 TTTTCTTGCAGGATCCAACACATTAGACAGCAACCTAATTGAATAAAAACCATCTTCATC 882 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 CAGCAATTTTTTAAATGCATCCTTTTCATCACCAGTCAACTCGTTCCTTGTGAACCGAAG 942 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 CTTAGTGAGAGTCTGGGATCCGTGCGCGGAGGACTTGAGGCGGGCGGAGAAGGACCCCGC 1002 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 GGGGACGAACCCGGCGCCGAGGTCGTGCTCGAGCGAGNACTGCACGGCGCTGGACTCCGC 1062 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 CGCCGCNGNGCTGCTGTCCCCGGGCCGCCGGCGGGAGGAGGAGACCGCCGCCGCAGCGGG 1122 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 CGCGGGCGGCCCTGGCGTGGGGCGTGCGCCCGCGCCCTCGAACTCGTCGTCGTCGTGGAG 1182 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 GAGCAGCTCGTCGGACTGGAAGGCGGAGGCGGCGGCGAGGGAGAGGGAGAGGGCGAGGAG 1242 consensus_12418#1 ------------------------------------------------------------ consensus_12418#0 GAGGAGGAGGGGGAGGAGGCGAGGGCGGCGCGGCGCGGCCATGGCTTCTGGTCGGGGGAG 1302 consensus_12418#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||