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Oryza sativa
cluster # 12425 cluster # 12425       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12425#0 length = 1667 sequences # 7  
consensus_12425#1 length = 298 sequences # 2  
consensus_12425#2 length = 285 sequences # 1  

consensusID : consensus_12425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1667
fasta sequence
                              [GGGGTGGATAAGGAGATAGAGAAGCGGCCGCTCCGCAGCTGCAGCGGCAAAGCCTCCCCGTCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCGTGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCTCGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCGCCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCACCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGTCGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGAACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGAAGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCCGCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATGCATTCGTCGTGGAGGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCGTGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGGATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATACCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTTCTTCCAATTTTATACAGAAAGTGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTCCCTAAAAAAGGGGAAATTCCGGGCCCTTAAATTAAATTCCCCCTTTTGGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTTAACACCGGGGGAGGGGAAAAACCCTGGGGTTCCCCAATTTAATGCCTTTGGAAAAAATCCCCTTTTTCCCCGGGGGGTTAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTTCAAAAAGTTGCCCCCCCTTTTCTTCCGGGGTTTTAGGGGTTCCCCCTTTAAA]

[+] EMBL AK120527             [GGGGTGGATAAGGAGATAGAGAAGCGGCCGCTCCGCAGCTGCAGCGGCAAAGCCTCCCCGTCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCGTGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCTCGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCGCCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCACCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGTCGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGAACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGAAGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCCGCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATGCATTCGTCGTGGATGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCGTGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGGATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATACCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTTCTTCCAATTTTATACAGAAA                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK104116             [                                                 AAGCCTCCCCGTCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCGTGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCTCGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCGCCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCACCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGTCGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGAACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGAAGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCCGCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATGCATTCGTCGTGGAGGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCGTGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGGATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATACCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATA                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK061468             [                                                   GCCTCCCCGTCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCGTGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCTCGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCGCCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCACCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGTCGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGAACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGAAGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCCGCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATGCATTCGTCGTGGAGGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCGTGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGGATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATACCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTTCTTCCAATTTTATACAGAA                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK104424             [                                                   GCCTCCCCGTCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCGTGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCTCGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCGCCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCACCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGTCGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGAACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGAAGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCCGCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATGCATTCGTCGTGGAGGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCGTGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGGATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATACCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU174806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAGCGGAAGGANCATTGGCTCCCTCAAGATGCTAACCCCCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTNTTCACCCCGGCCGCCATTAACTATCTCAACTCCAGGTATGGTGCCNCCGTTTTTGATGAATATGAGGATGATACCAATGGCGAGGATGATGGTGAGGAGGAANCAGAGGANTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCNTTTTGGCTTACNTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTNATGCAGTATATTAGATCTTCAANCTGCNCATATATTTTCAAATACAATGTCGTGTCAACCnaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF308273             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gaGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTG AAGTTTATAATG TTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTTCTTCCAATTTTATACAGAAAGTGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF316200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             aaagttttgTTCGCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTCCCTAAAAAAGGGGAAATTCCGGGCCCTTAAATTAAATTCCCCCTTTTGGGGGGCTTTTTAAAATTCCCGGGCCCGGTTTTTAACACCGGGGGAGGGGAAAAACCCTGGGGTTCCCCAATTTAATGCCTTTGGAAAAAATCCCCTTTTTCCCCGGGGGGTTAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTTCAAAAAGTTGCCCCCCCTTTTCTTCCGGGGTTTTAGGGGTTCCCCCTTTAAA]


>consensus_12425#0 GGGGTGGATAAGGAGATAGAGAAGCGGCCGCTCCGCAGCTGCAGCGGCAAAGCCTCCCCG TCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCG TGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCT CGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCG CCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCA CCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGT CGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGA ACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGA AGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCC GCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACC GCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATG CATTCGTCGTGGAGGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCG TGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGG ATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCC CCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCG CCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATA CCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCG CAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAA GGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAA GCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATAT TAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTT TTCTTCCAATTTTATACAGAAAGTGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTCCCTAAAAAAGGGGAAAT TCCGGGCCCTTAAATTAAATTCCCCCTTTTGGGGGGCTTTTTAAAATTCCCGGGCCCGGT TTTTAACACCGGGGGAGGGGAAAAACCCTGGGGTTCCCCAATTTAATGCCTTTGGAAAAA ATCCCCTTTTTCCCCGGGGGGTTAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTTCAAAA AGTTGCCCCCCCTTTTCTTCCGGGGTTTTAGGGGTTCCCCCTTTAAA



consensusID : consensus_12425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 298
fasta sequence
                              [GCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCAAAAAAAAAAAAAAA]

[+] EMBL AU197474             [GCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCAAAAAAAAAAAAAAA]
[-] EMBL AF521986             [                                        AGGAGAAGGGAGCGCAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGCCTGGTAATTGCTTCCCTGATGCAGAAGCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTC                   ]


>consensus_12425#1 GCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCGCAGAGG AGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAAGGAGGT GTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAAGCTTTT TGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATATTAGATC TTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCAAAAAAAAAAAAAAA



consensusID : consensus_12425#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence
                              [GATTCGGCACGAGCANTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGANCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGNGNAGANCGCGNGNTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCANAAGCTTTTTGGCTTACTTTTGTTGTAAGNTTATAATGTTTTTTTTTCACTGATGCAGTATATTANANCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTT]

[+] EMBL AA751849             [GATTCGGCACGAGCANTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGANCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGNGNAGANCGCGNGNTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCANAAGCTTTTTGGCTTACTTTTGTTGTAAGNTTATAATGTTTTTTTTTCACTGATGCAGTATATTANANCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTT]


>consensus_12425#2 GATTCGGCACGAGCANTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCC CGGANCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGNGNAGANCGCGN GNTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCANAAGCTTTTTGGCTTACTTT TGTTGTAAGNTTATAATGTTTTTTTTTCACTGATGCAGTATATTANANCTTCAAACTGCA CATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12425#0      GGGGTGGATAAGGAGATAGAGAAGCGGCCGCTCCGCAGCTGCAGCGGCAAAGCCTCCCCG 60
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      TCGTCCAGCCCACGCAGCGCACCGCAGCGAGCGAAGCCGCCGCAATGGCCGCCTCCTCCG 120
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      TGGCCTCGACTCTCCTCCTCTCGCTCTCCTCTTCCTCCTCGCCCTTCCTCTCCCCCACCT 180
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CGGTCTCCTTCCTCCCATCCGCCGCCGCCGCCGCCTCCTCCTCCCCGCGCGTCGCCGTCG 240
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CCGCCGGCAAGCAGAAGGCGGCTATCTCCGTCCTCCGCGCCCTTCGCGCCGAGGCGGCCA 300
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CCCTCCCGGTTCTCTCCTTCACCGGGGAGAAGGTCGGGGAGGTCGCCCTCGACCTCAAGT 360
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CGGCGCCGCCCTCCACCGCGCGCGCCGTCGTGCACCGCGCCATCATCACCGACCGCCAGA 420
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      ACAAGCGCCGCGGCACGGCCTCCACGCTCACCCGCGGCGAGGTCAGGGGAGGCGGCAGGA 480
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      AGCCCTACCAGCAGAAGAAGACGGGGAAGGCGCGGCGCGGGTCGATGCGCACGCCGCTCC 540
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      GCCCCGGCGGCGGCGTCATATTCGGGCCCAAGCCCCGCGACTGGTCCATCAAGATCAACC 600
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      GCAAGGAGAAGCGCCTCGCCATCTCCACCGCGCTCGCCAGTGCCGCCGTGGCCGACGATG 660
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CATTCGTCGTGGAGGAGTTCGACGAGGAGTTCGCCGCGGGTCCCAAGACCAGGGACTTCG 720
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      TGGCCGCGCTTCAGCGGTGGGGGCTCGACCCCAAGGAGAAGGCCATGTTCTTCGCCACGG 780
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      ATTTTGCAGACAATGTGCGGCTCAGCGGAAGGAACATTGGCTCCCTCAAGATGCTAACCC 840
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CCAGGACTCTCAACCTATACGACATCCTCGATGCCCGCAAGCTCTTCTTCACCCCGGCCG 900
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CCATTAACTATCTCAACTCCAGGTATGGTGCCACCGTTTTTGATGAATATGAGGATGATA 960
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      CCAATGGCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCG 1020
consensus_12425#1      ------GCGAGGATGATGGTGAGGAGGAAGCAGAGGAGTTGCAAGAAGGAGAAGGGAGCG 54
consensus_12425#2      ---GATTCGGCACGAGCANTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 57
                              **          ****  *   *  **  ** * **     **** ** * * 

consensus_12425#0      CAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAA 1080
consensus_12425#1      CAGAGGAGGCTGCTCAAGATGAGGCTGCAGAGACTGAGGCTGATAGCAATTCCTAGGGAA 114
consensus_12425#2      GCCCGGAN----CACCAGCTAAGGCCCCTAAA--------TGACCGC--TCAGTGATAAA 103
                           ***     * * ** * ****  *  *         ***  **  *   *    **

consensus_12425#0      GGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAA 1140
consensus_12425#1      GGAGGTGTAGATCGCGTGTTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCAGAA 174
consensus_12425#2      GGAGGNGNAGANCGCGNGNTTTTCGTTTGTTGGTCTGGTAATTGCTTCCCTGATGCANAA 163
                       ***** * *** **** * ************************************** **

consensus_12425#0      GCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATAT 1200
consensus_12425#1      GCTTTTTGGCTTACTTTTGTTGTAAGTTTATAATGTTTTTTTTTCACTGATGCAGTATAT 234
consensus_12425#2      GCTTTTTGGCTTACTTTTGTTGTAAGNTTATAATGTTTTTTTTTCACTGATGCAGTATAT 223
                       ************************** *********************************

consensus_12425#0      TAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTT 1260
consensus_12425#1      TAGATCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCAAAAAAAAAAA 294
consensus_12425#2      TANANCTTCAAACTGCACATATATTTTCAAATACAATGTCGTGTCAACCACTGCATATTT 283
                       ** * *********************************************    * *   

consensus_12425#0      TTCTTCCAATTTTATACAGAAAGTGCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1320
consensus_12425#1      AAAA-------------------------------------------------------- 298
consensus_12425#2      TT---------------------------------------------------------- 285
                                                                                   

consensus_12425#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1380
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      AAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTCCCTAAAAAAGGGGAAAT 1440
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      TCCGGGCCCTTAAATTAAATTCCCCCTTTTGGGGGGCTTTTTAAAATTCCCGGGCCCGGT 1500
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      TTTTAACACCGGGGGAGGGGAAAAACCCTGGGGTTCCCCAATTTAATGCCTTTGGAAAAA 1560
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      ATCCCCTTTTTCCCCGGGGGGTTAAAAAAAAAAAGGCCCCCCCCATTCCCCTTTTCAAAA 1620
consensus_12425#1      ------------------------------------------------------------
consensus_12425#2      ------------------------------------------------------------
                                                                                   

consensus_12425#0      AGTTGCCCCCCCTTTTCTTCCGGGGTTTTAGGGGTTCCCCCTTTAAA 1667
consensus_12425#1      -----------------------------------------------
consensus_12425#2      -----------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)