These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1023 fasta sequence [TGTTCAAGCTCACCTCAGTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGCTCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCGGCCGAGCAGGCGTGGTACATGCCGGCGGCGGCGCCGGCAC-CGATGGTGGAGAGCGCGGTGGC-GCGGGTGGAGCGGCTGGCGTCGGAGAGCGCGGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGGGTGCACCCGACGGTGCACGAGCTGGACCTCGACCCGCGCGGCCGCGAGCTGGAGCGCGCCCTGGCGCGCCTCGTCGGGTACGGCGGCCCCGCCGCCGCGTCGCCGCCCGTCGTCCCCGTCGTCTTCATCGGCGGCAAGCTCGTCGGCGCCATGGACCGCGTCATGGCCGCGCACATCAACGGCTCCCTCGTCCCCCTCCTCAAGGAGGCCGGCGCGCTCTGGCTCTAGGCCTCGCCCGCCCGCCATTGGCGTGCTCTGGCTTAGCCCCCCTAGTATACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGCTGCTAATGAAGAAGATGAAGATGATGATGATGACTAGCAAGTAGTTGATTGATTTAGCTGCTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTGCATGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCGCTGGATTTGCTTGC-TTTGATGCTGCATGCTATTGCTAGCTACTGAAATTACTACTACCAGTGTTTTATTTAAAAAAA] [+] EMBL AK073461 [TGTTCAAGCTCACCTCAGTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGCTCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCGGCCGAGCAGGCGTGGTACATGCCGGCGGCGGCGCCGGCAC CGATGGTGGAGAGCGCGGTGGC GCGGGTGGAGCGGCTGGCGTCGGAGAGCGCGGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGGGTGCACCCGACGGTGCACGAGCTGGACCTCGACCCGCGCGGCCGCGAGCTGGAGCGCGCCCTGGCGCGCCTCGTCGGGTACGGCGGCCCCGCCGCCGCGTCGCCGCCCGTCGTCCCCGTCGTCTTCATCGGCGGCAAGCTCGTCGGCGCCATGGACCGCGTCATGGCCGCGCACATCAACGGCTCCCTCGTCCCCCTCCTCAAGGAGGCCGGCGCGCTCTGGCTCTAGGCCTCGCCCGCCCGCCATTGGCGTGCTCTGGCTTAGCCCCCCTAGTATACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGCTGCTAATGAAGAAGATGAAGATGATGATGATGACTAGCAAGTAGTTGATTGATTTAGCTGCTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTGCATGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCGCTGGATTTGCTTGC TTTGATGCTGCATGCTATTGCTAGCTACTGAAATTACTACTACCAG ] [+] EMBL AU092797 [ CAGTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGCTCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCGGCCGAGCAGGCGTGGTACATGCCGGCGGCGGCGCCGGCAC CGATGGTGGAGAGCGCGGTGGC GCGGGTGGAGCGGCTGGCGTCGGAGAGCGCGGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGGGTGCACCCGACGGTGCACGAGCTGGAC ] [+] EMBL AU069644 [ AGTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGCTCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCANATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCGGCCGAGCAGGCGTGGTACATGCCGGCGGCGGCG CNGCACACGATGGTGGAGAGCGCGGTGGCNGGNGGTGGAGCGGCTGGCGTCGGAGAGCGCGGTGGTGGTGTTCAGCGTNA CAGCTGCTGCATGTGCCACGCCGTNAAG ] [+] EMBL AU092798 [ GTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATNCAGTACGGAGCGGCGNCCGAGCAGGCGTGGTACATGCCGGCGGCGGCGCCGGCAC CGATGGTGGAGAGCGCGGTGGC GCGGGTGGAGCGGCTGGCGTCGGAGAGCGCGGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGGGTGCACCCGACGGTGCACGAGCTGGAC ] [-] EMBL C98105 [ TCGGGTACGGCGGCCCCGCC CGNAGTCGCCGCCCGTCGTCCCCGTCGTCTTCATCGGCGGCAAGCTCGTCGGCGCCATGGACCGCGTCATGGCCGCGCACATCAACGGCTCCCTCGTCCCCCTCCTCAAGGAGGCCGGCGCGCTCTGGCTCTAGGCCTCGCCCGCCCGCCATTGGCGTGCTCTGGCTTAGCCCCCCTAGTATACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGCTGCTAATGAAGAAGATGAAGATGATGATGATGACTAGCAAGTAGTTGATTGATTTAGCTGCTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTGCATGCTTCGCGCGCGCGCGCNC ATTGTGGTTGTTTGTTNGCGCGTGCG TGGATTTGCTTNCTTTTGATGCTGGATG ] [-] EMBL OS0710A [ TGCTGCTGCTAATGAAGNAGNTGAAGATGATGATGATGACTAGCAAGTAGTTGANTGATTTAGCTGCTGCTAATAGGATANCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTGCATGCATNTCG NCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCGCTGGATTTGCTTGC TTTGATGCTGCATGCTATTGCTAGCTACTGAAATTACTACTAC ] [-] EMBL CF328769 [ GCAAGTGGTTGATTGATTTAGCTGCTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTGCATGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCGCTGGATTTGCTTGC TTTGATGCTGCATGCTATTGCTAGCTACTGAAATTACTACTACCAGTGTTTTATTTAAAAAAA] consensusID : consensus_12433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [GGCTTAGCCCCCCTAGTANACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGCTGCTAATGAAGAAGATGAAGATGATGATGATGACTANCAAGTAGTTGATTGATTTANCTGCTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTTANAGTGAGTNAGCTAGAGCTANAANAANANAGATCNAGGTTGGTGTGTGTGTGCTTTTTTTTTCACGACGACTGCCTCTGTCCGTNTCGTGCATGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCNCTGGATTTGCTTGCTTTGATGCTGCATGCTATTGCTAGCTACTGAAATTTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181744 [GGCTTAGCCCCCCTAGTANACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGCTGCTAATGAAGAAGATGAAGATGATGATGATGACTANCAAGTAGTTGATTGATTTANCTGCTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAATCAGTGTGTGAGTGAGTGTGTGTTTTANAGTGAGTNAGCTAGAGCTANAANAANANAGATCNAGGTTGGTGTGTGTGTGCTTTTTTTTTCACGACGACTGCCTCTGTCCGTNTCGTGCATGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCNCTGGATTTGCTTGCTTTGATGCTGCATGCTATTGCTAGCTACTGAAATTTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12433#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [GTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGCTCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCGGCCGAGCAGGGTGGGTACATGCCGNCGNGCNCANACAGNATNGGGTGGAAGAGCGCGGTGGCAGNTNGGGAGCGGCTGGCNTCCGGAGAGCGCGGTGGTGGT] [+] EMBL C27820 [GTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGCTCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACATCTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCGGCCGAGCAGGGTGGGTACATGCCGNCGNGCNCANACAGNATNGGGTGGAAGAGCGCGGTGGCAGNTNGGGAGCGGCTGGCNTCCGGAGAGCGCGGTGGTGGT] consensusID : consensus_12433#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [CGGTGCTAGCTAATTAANCAGTGTGTGANTGANTGTGTGTTTGAGANTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTNTCGTGCATGCTTGTNNNNCGNGCGNGCATGTGGTTGTTTGTTGGCCGTGCGCTGGATTTGCTTGCTTTGATGCTGCATGCTATTGCTAGCTACTGNNNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU091776 [CGGTGCTAGCTAATTAANCAGTGTGTGANTGANTGTGTGTTTGAGANTGAGTGAGCTAGAGCTAGAAGAAGAGAGATCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTNTCGTGCATGCTTGTNNNNCGNGCGNGCATGTGGTTGTTTGTTGGCCGTGCGCTGGATTTGCTTGCTTTGATGCTGCATGCTATTGCTAGCTACTGNNNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 TGTTCAAGCTCACCTCAGTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAGCTAGC 60 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 TCAGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCACACACAT 120 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 CTCCATTTGTGCATCAGATCACCGGCCAGGTCGTCGGCGAGAATGCAGTACGGAGCGGCG 180 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 GCCGAGCAGGCGTGGTACATGCCGGCGGCGGCGCCGGCACCGATGGTGGAGAGCGCGGTG 240 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 GCGCGGGTGGAGCGGCTGGCGTCGGAGAGCGCGGTGGTGGTGTTCAGCGTGAGCAGCTGC 300 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 TGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGGGTGCACCCGACGGTGCAC 360 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 GAGCTGGACCTCGACCCGCGCGGCCGCGAGCTGGAGCGCGCCCTGGCGCGCCTCGTCGGG 420 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 TACGGCGGCCCCGCCGCCGCGTCGCCGCCCGTCGTCCCCGTCGTCTTCATCGGCGGCAAG 480 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 ------------------------------------------------------------ consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 CTCGTCGGCGCCATGGACCGCGTCATGGCCGCGCACATCAACGGCTCCCTCGTCCCCCTC 540 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 -----------------------------------------------------------G 1 consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 CTCAAGGAGGCCGGCGCGCTCTGGCTCTAGGCCTCGCCCGCCCGCCATTGGCGTGCTCTG 600 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 GCTTAGCCCCCCTAGTANACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGC 61 consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 GCTTAGCCCCCCTAGTATACCTAGCACGCAAAAAGCTTTACCTGCTGCTGCTGCTGCTGC 660 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 TGCTAATGAAGAAGATGAAGATGATGATGATGACTANCAAGTAGTTGATTGATTTANCTG 121 consensus_12433#3 ------------------------------------------------------------ consensus_12433#0 TGCTAATGAAGAAGATGAAGATGATGATGATGACTAGCAAGTAGTTGATTGATTTAGCTG 720 consensus_12433#2 ------------------------------------------------------------ consensus_12433#1 CTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAA 181 consensus_12433#3 -------------------------------------------CGGTGCTAGCTAATTAA 17 consensus_12433#0 CTGCTAATAGGATATCCATCGATCGAGATACAGCCCATTTACACGGTGCTAGCTAATTAA 780 consensus_12433#2 ----------------------GTTGATTCTAGCTTAGCAACACACAAGCACACAGCTAG 38 * * * ** consensus_12433#1 TCAGTGTGTGAGTGAGTGTGTGTTTTANAGTGAGTNAGCTAGAGCTANAANAANANAG-A 240 consensus_12433#3 NCAGTGTGTGANTGANTGTGTGTTTGAGANTGAGTGAGCTAGAGCTAGAAGAAGAGAG-A 76 consensus_12433#0 TCAGTGTGTGAGTGAGTGTGTGTTTGAGAGTGAGTGAGCTAGAGCTAGAAGAAGAGAG-A 839 consensus_12433#2 CTAGCTC--AGCTCTCTGTGCTTCTCTAGCTAAGCTAATCGTTTTCAGGCGAAGGAAGCA 96 ** * **** * * * ** * * ** ** * consensus_12433#1 TCNAGGTTGGTGTGTGTGTGCTTTTTTTTTCACGACGACTGCCTCTGTCCGTNTCGTGCA 300 consensus_12433#3 TCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTNTCGTGCA 136 consensus_12433#0 TCGAGGTTGGTGTGTGTGTGCTTTTTTCTTCACGACGACTGCCTCTGTCCGTCTCGTGCA 899 consensus_12433#2 CACACATCTCCATTTGTGCATCAGATCACCGGCCA-GGTCGTCGGCGAGAATGCAGTACG 155 * * * **** * * * * * * * * ** * consensus_12433#1 TGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCNC-TGGATTTGCTT 359 consensus_12433#3 TGCTTGTNNNNCGNGCGNGC--ATGTGGTTGTTTGTTGGC-CGTGCGC-TGGATTTGCTT 192 consensus_12433#0 TGCTTCGCGCGCGCGCGCGCGCATGTGGTTGTTTGTTGGCGCGTGCGC-TGGATTTGCTT 958 consensus_12433#2 -GAGCGGCGGCCGAGCAGG-----GTGGGTACATGCCGNCGNGCNCANACAGNATNGGGT 209 * ** ** * **** * ** * * * * * * * * consensus_12433#1 GCTTTGATGCTGCATGCTATTGCTAGCTACTGAAATTTAAAAAAAAAAAAAAAAAAA--- 416 consensus_12433#3 GCTTTGATGCTGCATGCTATTGCTAGCTACTGNNNTTAAAAAAAAAAAAAAAAAAAAAAA 252 consensus_12433#0 GCTTTGATGCTGCATGCTATTGCTAGCTACTGAAATTACTACTACCAGTGTTTTATTTAA 1018 consensus_12433#2 GGAAGAGCGCGGTGGCAGNTNGGGAGCGGCTGGCNTCCGGAGAGCGCGGTGGTGGT---- 265 * ** * * * *** *** * * consensus_12433#1 ----- consensus_12433#3 AAAAA 257 consensus_12433#0 AAAAA 1023 consensus_12433#2 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||