|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 962 fasta sequence
[TTTCCTGGAAGGAGTACAGAAAATCCAAGGCAAATATAGTTATTACAACAGATTGGAACATCTGTGATTTAAGTTGGGAAACGAAATATCTGAACTATTAAAAAATTGAAGTCATGAACATTTAGGAAATTTCTTTACTTTTTCAAGACATAAATATTGAATCTCCTCAGTAACTCCTATATGGGATACAGCAGCAATGCACAGTAATAAAAAAAACCAAAGCTAAAGTATTTAGAATGATATTGAGCATATTAACCTGTAGTAAAATTGTTTTATATATTATAGTAAGCTATTGACCCACTAAAGGGATACAATGTTTGCTCAGTCTCTGCTGAAATGAATATTGCAGTGATTCTTGTTATTGAATTGTGTTGTTTATGCAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACCAGAACTAAAAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCATAAATCACAATCACTTTGATCCGTTCTGTTTCGAGTGCAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATG-TCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGG-AAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTGTCCGGGAAAAAA]
[+] EMBL AK102288 [TTTCCTGGAAGGAGTACAGAAAATCCAAGGCAAATATAGTTATTACAACAGATTGGAACATCTGTGATTTAAGTTGGGAAACGAAATATCTGAACTATTAAAAAATTGAAGTCATGAACATTTAGGAAATTTCTTTACTTTTTCAAGACATAAATATTGAATCTCCTCAGTAACTCCTATATGGGATACAGCAGCAATGCACAGTAATAAAAAAAACCAAAGCTAAAGTATTTAGAATGATATTGAGCATATTAACCTGTAGTAAAATTGTTTTATATATTATAGTAAGCTATTGACCCACTAAAGGGATACAATGTTTGCTCAGTCTCTGCTGAAATGAATATTGCAGTGATTCTTGTTATTGAATTGTGTTGTTTATGCAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACCAGAACTAAAAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCATAAATCACAATCACTTTGATCCGTTCTGTTTCGAGTGCAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATG TCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGG AAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAA ]
[-] EMBL CF296072 [ GTTGCAAGATAAAAAAGATCAAGCGTGCAAAGTTCATGTGATATCTCTGTTAAAAGCCAAAGCGTTTTTGTGGCGATGTCTCGCTGTTTGTATTGGAGATATCTCCGTGTACTGATGCAAGGAAAGTAGCCTTTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTGTCCGGGAAAAAA]
consensusID : consensus_12440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 685 fasta sequence
[TCCTCCCTTTCCCATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC-TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTATTCAGGAAAAAAAATGA]
[+] EMBL CF296071 [TCCTCCCTTTCCCATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTA ]
[+] EMBL CF324575 [ TTTCCCATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCT ]
[+] EMBL AK105390 [ CATCCTGCCTCAAAGATAGGTTCTTGACGGGGGAAGGAAAGCTGCTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGCACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTATTCAGGAAATGAGATGA]
[+] EMBL CF279337 [ GACGGGGGAAGGAAAGCTGTTCGCCTCCGCTGCACAGCTCGTCTGCTCGCCGGGAAGCACGGAAATTATGTCTCATCAAAGGGAATCCAGGGTATGGTGTTGATCTGTCTGGGCTCCATGTCTAAGTGGGAACCAGTCACATTTGAGGAATCTTTTTGCTTTGTCAAGAAAGTTAATGCTCGTGATTATGTGTTGTACTTGNCTCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTG AAAAGATCAAGCGTGCAATGTCATG ]
[-] EMBL CF279336 [ TCTTTGCTTTGTCAAGAAAGTTAAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGAAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATTTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTTTTTTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTTTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTTTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCCCTATTCAGGAAAAAAAA ]
[+] EMBL AU166254 [ GGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGNAAAATCACTATTCAGGAAAAAAA ]
[+] EMBL OSS12926A [ GGAAGCTTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATC ]
[+] EMBL AU096241 [ GAAG TTACAGCGAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCC TTCCTACCCNAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCNTGTCCTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGTGCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGTTTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGCGCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGNAAAATCACTATTCAGGAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12440#0 TTTCCTGGAAGGAGTACAGAAAATCCAAGGCAAATATAGTTATTACAACAGATTGGAACA 60
consensus_12440#1 ------------------------------------------------------------
consensus_12440#0 TCTGTGATTTAAGTTGGGAAACGAAATATCTGAACTATTAAAAAATTGAAGTCATGAACA 120
consensus_12440#1 ------------------------------------------------------------
consensus_12440#0 TTTAGGAAATTTCTTTACTTTTTCAAGACATAAATATTGAATCTCCTCAGTAACTCCTAT 180
consensus_12440#1 ------------------------------------------------------------
consensus_12440#0 ATGGGATACAGCAGCAATGCACAGTAATAAAAAAAACCAAAGCTAAAGTATTTAGAATGA 240
consensus_12440#1 ------------------------------------------------------------
consensus_12440#0 TATTGAGCATATTAACCTGTAGTAAAATTGTTTTATATATTATAGTAAGCTATTGACCCA 300
consensus_12440#1 -----------------------TCCTCCCTTTCCCATCCTGCCTCAAAG-ATAGGTTCT 36
*** ** * ** ** * *
consensus_12440#0 CTAAAGGGATACAATGTTTGCTCAGTCTCTGCTGAAATGAATATTGCAGTGATTCTTGTT 360
consensus_12440#1 TGACGGGGGAAGGAAAGCTGCTC-GCCTCCGCTGCACAGCTCGTCTGCTCGCCTGGAAGC 95
* *** * * ***** * *** **** * * * * *
consensus_12440#0 ATTGAATT---GTGTTGTTTATGCAGGCTCGTGATTATGTGTTGTACTTGTCGCTGCTTG 417
consensus_12440#1 ACGGAAATTATGTCTCATTAAAGGGAATCCAGGGTATGGTGTTGAGCT-GTCTGGGCTCC 154
* *** * ** * ** * * * * * ****** ** *** ***
consensus_12440#0 ATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACCAGAACTAA 477
consensus_12440#1 ATGT-CTAAGTGGGAACCAGTC-ACATTTGAGGAATCTCTTTGCTTTGTCAAGAAAGTTA 212
**** ** *** **** ** * * **** ** ** ** ** * *
consensus_12440#0 AAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCA 537
consensus_12440#1 AGGCTCGT----------------GATTATGTGTTGTACTTGTCGCTGCTTGAT--GTGC 254
* * * *** * * * *** *** *** ** *
consensus_12440#0 TAAATCACAATCACTTTGATCCGTTCTG---TTTCGAGTGCAGCTTTCACTTCTTTTCCG 594
consensus_12440#1 TCAGTCGAAATGAGCA-GATCCCTCTGGAAGCTTACAGCG-AGCTTTCACTTCTTTTCCG 312
* * ** *** * ***** * * ** ** * *******************
consensus_12440#0 GGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCAC 654
consensus_12440#1 GGATCACGACGATCTGCTGGAAGAGCTAGCGAAGTTCAGACCCCTTCCTACCCCAAGCAC 372
************************************************************
consensus_12440#0 AGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAG 714
consensus_12440#1 AGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTCCTAAG 432
************************************************************
consensus_12440#0 CATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGT 774
consensus_12440#1 CATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGCTGAAAAAGATCAAGCGT 492
************************************************************
consensus_12440#0 GCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGT 834
consensus_12440#1 GCAATGTCATGTGATATCTCTGTTAAAAGCCAAAGCGTCTTTGTGGCGATGTCTCGCTGT 552
************************************************************
consensus_12440#0 TTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGC 894
consensus_12440#1 TTATATTGGAGATATCTCCGTGTACTGATGCAAGGAAGTAGCCTCTTAGCTTGGAAGAGC 612
************************************************************
consensus_12440#0 GCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTGTCCG 954
consensus_12440#1 GCCAATACATGGTAAAAACAGTATTGTTTTGACTTGCTGAAAAAGAAAAATCACTATTCA 672
******************************************************* * *
consensus_12440#0 GGAAAAAA----- 962
consensus_12440#1 GGAAAAAAAATGA 685
********
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||