These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 810 fasta sequence [GTAGCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGC-TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG-ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG-TTCGTGC-TCGACGTCCC-TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG-G-GAGGAGGAGGAAGGGGAGTGCAAGTACA-TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAAGTCCGTCCAGGTCACCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGCGGTAGTAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACGATTCCAAATCGAT] [+] EMBL AK119261 [GTAGCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCAAGTACA TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAAGTCCGTCCAGGTCACCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGCGGTAGTAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACGATTCCAAATCGAT] [+] EMBL AU093373 [ ccgGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCAAGTACA TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCA ] [+] EMBL OSC106 [ GCAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGNTCGG GGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGCTTCGACGTCCC TGGGCTTTTCAAGTCCGACATTCAGGTGACGNTTNAGG ] [+] EMBL OSC3911 [ CAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTNCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGNTCGG GGTCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGGGTA GAGGAGGAGGAAGGGGAGTTCAAGTACATTCCGCt ] [+] EMBL AU063679 [ CAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGTC NCGNGGACCGCCGNTCGG GGGCGTACCACGCGCACCACGNCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGNCAGTGGACATCATGGAGACCCCCGGCGAGTACGCGTTTCGTGC TCGACGTCCCTTGGNCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGTTGA ] [+] EMBL AU093374 [ CAAAGCCCAAGTTGGTAGCCATGACGGAGCTTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGAAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCAAGTACA TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCA ] [+] EMBL AU182085 [ AAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCA ] [+] EMBL C29078 [ CGACACCGCCGTGACCAGCCTCCTNCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGG GGNCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCANTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGNCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTNCTNGTGATGAAGAGCAGCAATNGCGCCGGGAACGGGAAGCGGAA CG GNGAAGAGGAGGAAG ] consensusID : consensus_12447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [GCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGGCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGCGTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTTAGTTTGGGCGCGATTCTTTCTTGTCTGCGCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCGGGAGGAGGAGGAAGGGGAGTGCAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACG] [+] EMBL AK063602 [GCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGGCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGCGTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTTAGTTTGGGCGCGATTCTTTCTTGTCTGCGCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCGGGAGGAGGAGGAAGGGGAGTGCAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACG] consensusID : consensus_12447#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [AGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGACNCGGGGACCGNCGTTCGNGGTCGTACCACGCGNACCACGNCGCGNATGGACACGGCCAGNACCGCATCAGTGGAATCGGTGGTGGCGNGTCAGTGGACATCA] [+] EMBL C29132 [AGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGACNCGGGGACCGNCGTTCGNGGTCGTACCACGCGNACCACGNCGCGNATGGACACGGCCAGNACCGCATCAGTGGAATCGGTGGTGGCGNGTCAGTGGACATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12447#0 GTAGCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCG 60 consensus_12447#2 ----------------------AGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCG 38 consensus_12447#1 ---GCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCG 57 ************************************** consensus_12447#0 ACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCG 120 consensus_12447#2 ACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGACN 98 consensus_12447#1 ACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGGCTCGGCGCCGCCG 117 ********************************************** ********** * consensus_12447#0 CCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGC 180 consensus_12447#2 C-GGGGACCGNCGTTCGNGGTCGTACCACGCGNACCACGNCGCGNATGGACACGGCCAGN 157 consensus_12447#1 CCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGC 177 * ******** ** *** * ******** ****** **** ************** consensus_12447#0 ACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGT 240 consensus_12447#2 ACCGCATCAGTGGAATCGGTGGTGGCGNGTCAGTGGACATCA------------------ 199 consensus_12447#1 ACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGT 237 *************************** * ************ consensus_12447#0 ACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGG 300 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 ACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGC--------- 288 consensus_12447#0 AGGACAGGGTGCTGGTGATGAAGAGCAGCAATG-GCGCCGGGAACGGGAAGCGGAAGCGG 359 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 -GTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTT--AGTTT 345 consensus_12447#0 GAGGAGGAGGAAGGGGAGTGCAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCG 419 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 GGGCGCGATTCTTTCTTGTCTGCGCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATG 405 consensus_12447#0 TTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGA-TG 478 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 AA-GAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCGGGAGGAGGAGGAAGGGGAGTG 464 consensus_12447#0 CGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAA 538 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 CAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCT 524 consensus_12447#0 GTCCGTCCAGGTCACCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGC 598 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 CCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGT 584 consensus_12447#0 GGTAGT--AGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTG 656 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 CACCGTCAAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTG 644 consensus_12447#0 CTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGT 716 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 CTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGT 704 consensus_12447#0 GACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTAT 776 consensus_12447#2 ------------------------------------------------------------ consensus_12447#1 GACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTAT 764 consensus_12447#0 GTCAAATCTCGTTCGTGAACGATTCCAAATCGAT 810 consensus_12447#2 ---------------------------------- consensus_12447#1 GTCAAATCTCGTTCGTGAACG------------- 785 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||