These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 490 fasta sequence [GAAGAGCCCNTGGTGGCTACTA-CGGAGGTGGTCGACGTGGTG-GATATGGCTATGATTA-CGGTTATGGCGGCAGGGGGGACTATTATGAAGATCA-GGGCGAATACTTTGAAGAACCA-GAGGACTACCCCCCTCCAGGCCGTGGACGTGG-CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG-CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGTTTTC-GACATGAATCCGTATG-CCCCATCAGTATGTTTTTACTT-CCCGTGG-CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA-AACAAACAAACA-CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCAAAAAAAAAAA] [+] EMBL BQ906212 [GAAGAGCCCNTGGTGGCTACTACCGGAGGTGTTC ACGTGGTGAGATATGGCTATGATTACCGGTTAT GCGCCAGGGGGGACTATTATGAAGATCACGGGCGAATACTTTGAAGAACCACGAGGACTACCCCCCTCCAGGCCGTGGACGTGGCCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGTTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCCAAAGCAACAACATAACAAACNAACACCCCTGTGCT CTGTTTATTTATCAACAACCTAGGTTTCCTTCCCAAAAAAAAAA] [+] EMBL AU092591 [ GCTACTA CGGAGGTGGTCGACGTGGTG GATATGGCTATGATTA CGGTTATGGCGGCAGGGGGGACTATTATGAAGATCA GGGCGAATACTTTGAAGAACCA GAGGACTACCCCCCTCCAGGCCGTGGACGTGG CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT AAAAAA ] [-] EMBL CB673885 [ CTACTA CGGAGGTGGTCGACGTGGTG GATATGGCTATGATTA CGGTTATGGCGGCAGGGGGGACTATTATGAAGATCA GGGCGAATACTTTGAAGAACCA GAGGACTACCCCCCTCCAGGCCGTGGACGTGG CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCC ] [+] EMBL AU092403 [ GGGGGACTATTATGAAGATCA GGGCGAATACTTTGAAGAACCA GAGGACTACCCCCCTCCAGGCCGTGGACGTGG CAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGG CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCAAAAAAAA ] [+] EMBL BI798198 [ CCGGGACCATTCCGTGGTCGC G CCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGTTTTC GACATGAATCCGTATG CCCCATCAGTATGTTTTTACTTCCCCGTGGCCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGC AAAGCAAC AC AAC AACAAACA CCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT AAAAAAA ] [-] EMBL CB966396 [ CTGTAAGGGGTTTTCTGACCTGAATCCGTATGCCCCCATCAGTATGTTTTTACTT CCCGTGG CGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACA AACAAACAAACA TCCTGTGCTGCTGTTTATTTATCAACAACCTAGGT ] consensusID : consensus_12450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [CCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCTGCGTGTGCTCTGAATGCCATGAATTCTGTTTCGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU058320 [CCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCTGCGTGTGCTCTGAATGCCATGAATTCTGTTTCGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12450#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 375 fasta sequence [CGGCGAGCACCATGGCCAGCGGGACCAGCCATGAACGGCGTCCGAGCGCCACCATTGCGTACGTGTGCCTTAGCCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAAAATAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT] [-] EMBL CF322934 [CGGCGAGCACCATGGCCAGCGGGACCAGCCATGAACGGCGTCCGAGCGCCACCATTGCGTACGTGTGCCTTAGCCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAAAATAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT] [-] EMBL CF324431 [ TGCGTACGTGTGCCTTAGCCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATTNTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGT AGCTAGGCCTGTCCTGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTT] consensusID : consensus_12450#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [TTTGCACACACCAGGAAACAGCTGATGGACATGGATTGACGAATGTTGAATACTGACTCACTGATGAGGGAATTTGGGCCCTGCGAGGCCACAGAATGTGCTGGCACAGAGGCCATTGCTGTATGGGGTTTGTGCGACATGGAATGCCTGTGATGGCCCCATCAGTATGTTTTTACTGTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACTACTAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCCAAAAAAAAATAAATAATATATTTATTTTATATAAT] [-] EMBL CB964501 [TTTGCACACACCAGGAAACAGCTGATGGACATGGATTGACGAATGTTGAATACTGACTCACTGATGAGGGAATTTGGGCCCTGCGAGGCCACAGAATGTGCTGGCACAGAGGCCATTGCTGTATGGGGTTTGTGCGACATGGAATGCCTGTGATGGCCCCATCAGTATGTTTTTACTGTCCCGTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAACTACTAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAACCTAGGTTTCCTTCCCAAAAAAAAATAAATAATATATTTATTTTATATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12450#1 ------------------------------------------------------------ consensus_12450#2 ------------------------------------------------------------ consensus_12450#0 GAAGAGCCCNTGGTGGCTACTACGGAGGTGGTCGACGTGGTGGATATGGCTATGATTACG 60 consensus_12450#3 ------------------------------------------------------------ consensus_12450#1 ------------------------------------------------------------ consensus_12450#2 ----------------------------------------------CGGCGAGCACCATG 14 consensus_12450#0 GTTATGGCGGCAGGGGGGACTATTATGAAGATCAGGGCGAATACTTTGAAGAACCAGAGG 120 consensus_12450#3 ------------------------------------------------------------ consensus_12450#1 ----CCCC--TCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCG-----GAGGACCGGG 49 consensus_12450#2 GCCAGCGG--GACCAGCCATGAACGGCGTCCGAGCGCCACCATTGCGTACGTGTGCCTTA 72 consensus_12450#0 ACTACCCCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCG-----GAGGACCGGG 175 consensus_12450#3 ---------------------------------------------------TTTGCACAC 9 * consensus_12450#1 ACCATTCCGTGGTCG-CGGCCGTGGGCGTGGTCGATTCTAAG-ATGAAATCAGGAGGAGG 107 consensus_12450#2 GCCATTCCGTGGTCG-CGGCCGTGGGCGTGGTCGATTCTAAG-ATGAAATCAGGAGGAGG 130 consensus_12450#0 ACCATTCCGTGGTCG-CGGCCGTGGGCGTGGTCGATTCTAAG-ATGAAATCAGGAGGAGG 233 consensus_12450#3 ACCAGGAAACAGCTGATGGACATGGAT-TGACGAATGTTGAATACTGACTCACTGATGAG 68 *** * * ** * *** ** ** * * * * *** * consensus_12450#1 TGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGG 167 consensus_12450#2 TGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGG 190 consensus_12450#0 TGCCCTTGAAGCTTGAGAACTCGTGTGCTTAAATTATCTGATAATGCTGTTCTGTATGGG 293 consensus_12450#3 GGAATTTGGGCCCTGCGAGGCCACA-GAATGTGCTGGCACAGAGGCCATTGCTGTATGGG 127 * *** * ** ** * * * * * * * * * ********* consensus_12450#1 GGTTT--CGACATG-AATCCGTATG----CCCCATCAGTATGTTTTTACT-TCCCGTGGC 219 consensus_12450#2 GGTTT--CGACATG-AATCCGTATG----CCCCATCAGTATGTTTTTACT-TCCCGTGGC 242 consensus_12450#0 GTTTT--CGACATG-AATCCGTATG----CCCCATCAGTATGTTTTTACT-TCCCGTGGC 345 consensus_12450#3 GTTTGTGCGACATGGAATGCCTGTGATGGCCCCATCAGTATGTTTTTACTGTCCCGTGGC 187 * ** ******* *** * * ** ********************* ********* consensus_12450#1 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGC-TAGGCCTGTCC 278 consensus_12450#2 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAAAATAGGCCTGTCC 302 consensus_12450#0 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGC-TAGGCCTGTCC 404 consensus_12450#3 GGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGC-TAGGCCTGTCC 246 ********************************************** *********** consensus_12450#1 TGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 338 consensus_12450#2 TGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 362 consensus_12450#0 TGTCAGCAAAAGCAACAACAAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 464 consensus_12450#3 TGTCAGCAAAAGCAACTACTAACAAACAAACACCCTGTGCTGCTGTTTATTTATCAACAA 306 **************** ** **************************************** consensus_12450#1 CCTAGGTTTCCTTCCTGCGTGTGCTCTGAATGCCATGAATTCTGTTTCGTCCAAAAAAAA 398 consensus_12450#2 CCTAGGTTTCCTT----------------------------------------------- 375 consensus_12450#0 CCTAGGTTTCCTTCCAAAAAAAAAAA---------------------------------- 490 consensus_12450#3 CCTAGGTTTCCTTCCCAAAAAAAAATAAATAATATATTTATTTTATATAAT--------- 357 ************* consensus_12450#1 AAAAAAAAAAAAAAAAAAAAAAA 421 consensus_12450#2 ----------------------- consensus_12450#0 ----------------------- consensus_12450#3 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||