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Oryza sativa
cluster # 12458 cluster # 12458       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12458#0 length = 839 sequences # 8  
consensus_12458#1 length = 686 sequences # 1  
consensus_12458#2 length = 553 sequences # 1  

consensusID : consensus_12458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 839
fasta sequence
                              [CCTCACTAAGGGAATAGCTGCGG-CGCTCCCCTCCGCCGCCTGTCCG-CGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG-CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA-A-GGCGA-A-GGAGGAGA-AGATGGCGTTCGA-CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA-GCTGA-GGGCGTTCACGA-A-TCTGGGCCTCAA-GGA-GGCGAAGGA-GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG-CATCGCCGAGAAGA-TGCGAGCTATCGGCGCCAAGA-TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAG-ACCTAGGAATCAA-TAATTAA-CGAAA--TTCACTAT-GGGGATTTTCT-CATTTGTTA-GTGGAA-ATT-CCTTTT-GAACCTTGG--AGTTTTGAGCT-ATGTGTTC-ATA-GGCTC-AGTA-CA-GTACC-A-GAGCTTTGAGCTCTGTCTCTTGACTGTCTGTTTGATTGTACGGGAAAGATATCTTTTTAATGAAAGCAGAGCAAACTAGCGGATTAAAAAAAAAAAAAAAAAACGGGGCCTCTTGCGGAATTCTTGGCTCG]

[+] EMBL CB964662             [CCTCACTAAGGGAATAGTTGCGG CGCTCCCCTCCGCCGCCTGTCGC CGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGT TCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A TCTGGGCCTCAA GGA GGCGAAGGA GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG CATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGA TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGCTTTGTTACTGTTTCTTGTATGAAGTACCAGCGAGACTATAGAG ACCTCGGAATCAA TAATTAA CGAAA  TTCACT                                                                                                                                                                                                                                        ]
[+] EMBL CB964568             [         GGGAATA CTGCGG CGCTCCCCTCCGCCCGCTGTCCG CGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A TCTGGGCCTCAA GGA GGCGAAGGA GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG CATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGA TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAG ACCTAGGAATCAA TAATTAA CGAAA  TTCACTAT GGGGATTTTCT CATTTGTTA GTGGAA ATT CCTTTT GAACCTTGG  AGTTTTGAGCT ATGTGTTC ATA GGCTC AGTA CA GTACC A GAGCTTTGAGCTCTGTCTCTTGACTGTCTGTTTGATTGTACGGGCAAGATATCTTTTTAATGAAAGCAGAGCAAACTAGCGGATTAAAAAAAAAAAAAAAAAACGGGGCCTCTTG                ]
[+] EMBL CB966465             [             ATAGCTG GG CG T CCCTCCGCCG CTGT CG CGG GGCGG GG GGCGGCGGTGCGGTCG CG CTTCTC ACCGTAACCCCGA  CCGCGCGTCTCCGCGCTCGTAGACGAGATCTG GGCCTC CCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A TCTGGGCCTCAA GGA GGCGAAGGA GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG CATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGA TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAG ACCTAGGAATCAA TAATTAA CGAAA  TTCACTAT GGGGATTTTCT CATTTGTTA GTGGAA ATT CCTTTT GAACCTTGG  AGTTTTGAGCT ATGTGTTC ATA GGCTC AGTA CA GTACC A GAGCTTTGAGCTCTGTCTCTTGACTGTCTGTTTGATTGTACGGCAAAGATATCTTTTTAATGAAAGCAGAGCAAACTAGCGGATTAACAACAAAAACAAAAACCGAGCCCTCTTCCGGAATTCTTGGCTCG]
[+] EMBL CB966837             [                aCTGCGGTCGCTCCCCTCCGCCG CTGTCCG CGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGCGGCGACACGGCGACACGGAGGAGACAGATGGCGTTCGACCGTGAAGCTGGAGGGCTTCGCCGCCGCCGCGAAGCTCAAGATCATCAAAGACGCTGACGGGCGTTCCCGACACTCTGGGCCTCAACGGACGGCGAAGGACGCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG CATCGCCGAGAAGACTGCGAGCTATCGGCGCCAAGACTTGTTCTCGACTGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAG ACCTAGGAATCAA TAATTAA CGAAA  TTCACTAT GGGGATTTTCT CATTTGTTA GTGGAA ATT CCTTTT GAACCTTGG  AGTATGGAGCT ATGTGTTCAATA GGCTC AGTA CAGGTACCAA GAGCTTTGA                                                                                                                          ]
[+] EMBL CB967274             [                 tTGCGG CGCTCCCCTCCGCCG CTGT CG CGGCGGCGGCGGCGGCGGCGG GCGGTCGCCG CTTCTCAACCGTAACCCCGACCCCGCGCGT TCCG GCTCGTAGACGAGATCTG GG CT  CCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCG CTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A TCTGGGCCTCAA GGA GGCGAAGGA GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG CATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGA TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTNGAGAACCTAGGAATCAATTAATTAACCGAAAATTTCACTATGGGGGATTTTCTCCATTTGTTACGTGGAACATTCCCTTTTGGAACCTTGGGAAGTATTGAGCTAATGTGTTC ATAGGGCTCAAGTACCA GTACC AGGAGCTTTGAG                                                                                                                         ]
[+] EMBL CB964804             [                      ggggtatCCCT CGCCGCCTGT CG CGGCGGCGGCGGCGGCGGCGGTGCGGTCG CGCCTTCT AACCGT ACCCCGA CCCGCGCGT TCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A TCTGGGCCTCAA GGA GGCGAAGGA GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAGCCATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGA TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTcca                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB965868             [                                      GCCTGTCCGCCGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCG CGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A TCTGGGCCTCAA GGA GGCGAAGGA GCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAG CATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGA TTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAG ACCTAGGAATCAA TAATTAA CGAAA  TTCACTAT GGGGATTTTCT CATATGTTA GTGGAA ATT CCTTTT GAACCTGGG  AGTTTAGAGCT ATGGGTTC ATA GGCTC AGTA CA GTACC A GAGCTTTGAGCTCTGTCTC TGACTGGCTGTTTGATGGT CGGGAAAGAT TC TTTTAATGAAAca                                                                ]
[+] EMBL CB965570             [                                      GCCTGTCGC CGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGCTTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCCGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGA A GGCGA A GGAGGAGA AGATGGCGTTCGA CGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGA GCTGA GGGCGTTCACGA A T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_12458#0 CCTCACTAAGGGAATAGCTGCGGCGCTCCCCTCCGCCGCCTGTCCGCGGCGGCGGCGGCG GCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCG TAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCG GCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGC TCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGAAGGCGAAGGAGGAGA AGATGGCGTTCGACGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCA AAGAGCTGAGGGCGTTCACGAATCTGGGCCTCAAGGAGGCGAAGGAGCTCGTGGAGAAGG CGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAGCATCGCCGAGAAGA TGCGAGCTATCGGCGCCAAGATTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTC GTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAGACCTAGGA ATCAATAATTAACGAAATTCACTATGGGGATTTTCTCATTTGTTAGTGGAAATTCCTTTT GAACCTTGGAGTTTTGAGCTATGTGTTCATAGGCTCAGTACAGTACCAGAGCTTTGAGCT CTGTCTCTTGACTGTCTGTTTGATTGTACGGGAAAGATATCTTTTTAATGAAAGCAGAGC AAACTAGCGGATTAAAAAAAAAAAAAAAAAACGGGGCCTCTTGCGGAATTCTTGGCTCG



consensusID : consensus_12458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [GGCACACCACTGCATCACCCCTCTCTCTCCTCCCAAAACCCTAACAATGGCTTCCCGCCTCCTCCACCTCCGCCGCCTCCTCCCCTCCGCCCGCCCGTCCGCCGGCGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGAAGGCGAAGGAGGAGAAGATGGCGTTCGACGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGAGCTGAGGGCGTTCACGAATCTGGGCCTCAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAGCATCGCCGAGAAGATGCGAGCTATTGGCGCCAAGATTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAGACCTAGGAATCAATAATTAACGAAATTCACTATGG]

[+] EMBL AK062628             [GGCACACCACTGCATCACCCCTCTCTCTCCTCCCAAAACCCTAACAATGGCTTCCCGCCTCCTCCACCTCCGCCGCCTCCTCCCCTCCGCCCGCCCGTCCGCCGGCGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGAAGGCGAAGGAGGAGAAGATGGCGTTCGACGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAAAGAGCTGAGGGCGTTCACGAATCTGGGCCTCAAGGAGGCGAAGGAGCTCGTGGAGAAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAGCATCGCCGAGAAGATGCGAGCTATTGGCGCCAAGATTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAGACCTAGGAATCAATAATTAACGAAATTCACTATGG]


>consensus_12458#1 GGCACACCACTGCATCACCCCTCTCTCTCCTCCCAAAACCCTAACAATGGCTTCCCGCCT CCTCCACCTCCGCCGCCTCCTCCCCTCCGCCCGCCCGTCCGCCGGCGGCGGCGGCGGCGG CGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGT AGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGG CCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCT CGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGAGGAGGCGAAGGCGAAGGAGGAGAA GATGGCGTTCGACGTGAAGCTGGAGGGCTTCGACGCCGCCGCGAAGCTCAAGATCATCAA AGAGCTGAGGGCGTTCACGAATCTGGGCCTCAAGGAGGCGAAGGAGCTCGTGGAGAAGGC GCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGGAGGCGGAGAGCATCGCCGAGAAGAT GCGAGCTATTGGCGCCAAGATTGTTCTCGAATGAGAGCACGAGAGCTATGTATGGCTTCG TTTCTTGATTTGTTTCTGTTTCTTGTATGAAGTAAAAGAGAGAATTTTGAGACCTAGGAA TCAATAATTAACGAAATTCACTATGG



consensusID : consensus_12458#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence
                              [GGGAATAGCGCGGCGCTCCCCTCCGCCCGCTGTCCGCCGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGCAGGCAGCGCACAGGCGCACAGGCAGGCAGCACAGCATGGCGTTCGCACGTGCACAGCTGGCAGGGCTTCGCACGCCGCCGCGCACAGCTCCAAGCACATCAAAGCAGCTGAGGGCGTTCACGCAATCTGGGCCTCAAGGCAGCGCAAGGCAGCTCGTGGCAGCAAGGCGCCGGCCGAGCTGAAGGCGGGAGTCCCCAAGGCAGGCAGGCGGCACAGCACGCCGCACAAGCATGCGAGCTAATCGGCGCCAAAGCATAGTACTCGCAATGCAGCAGCACGCAGAGC]

[+] EMBL CB964982             [GGGAATAGCGCGGCGCTCCCCTCCGCCCGCTGTCCGCCGGCGGCGGCGGCGGCGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCTCGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGCAGGCAGCGCACAGGCGCACAGGCAGGCAGCACAGCATGGCGTTCGCACGTGCACAGCTGGCAGGGCTTCGCACGCCGCCGCGCACAGCTCCAAGCACATCAAAGCAGCTGAGGGCGTTCACGCAATCTGGGCCTCAAGGCAGCGCAAGGCAGCTCGTGGCAGCAAGGCGCCGGCCGAGCTGAAGGCGGGAGTCCCCAAGGCAGGCAGGCGGCACAGCACGCCGCACAAGCATGCGAGCTAATCGGCGCCAAAGCATAGTACTCGCAATGCAGCAGCACGCAGAGC]


>consensus_12458#2 GGGAATAGCGCGGCGCTCCCCTCCGCCCGCTGTCCGCCGGCGGCGGCGGCGGCGGCGGTG CGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGTAGACGAGA TCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGGCCGCCTCG GCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCTCGCTGGCG GCGGGGCGGCCACCGGGGCGGCCGGCGCAGGCAGCGCACAGGCGCACAGGCAGGCAGCAC AGCATGGCGTTCGCACGTGCACAGCTGGCAGGGCTTCGCACGCCGCCGCGCACAGCTCCA AGCACATCAAAGCAGCTGAGGGCGTTCACGCAATCTGGGCCTCAAGGCAGCGCAAGGCAG CTCGTGGCAGCAAGGCGCCGGCCGAGCTGAAGGCGGGAGTCCCCAAGGCAGGCAGGCGGC ACAGCACGCCGCACAAGCATGCGAGCTAATCGGCGCCAAAGCATAGTACTCGCAATGCAG CAGCACGCAGAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12458#0      ----------------------------------------------------CCTCACTA 8
consensus_12458#2      ------------------------------------------------------------
consensus_12458#1      GGCACACCACTGCATCACCCCTCTCTCTCCTCCCAAAACCCTAACAATGGCTTCCCGCCT 60
                                                                                   

consensus_12458#0      AGGGAATAGCTGCGGCG--CTCCCCTCCGCCGCCT-GTCCGC----GGCGGCGGCGGCGG 61
consensus_12458#2      -GGGAATAGC-GCGGCG--CTCCCCTCCGCCCGCT-GTCCGCC---GGCGGCGGCGGCGG 52
consensus_12458#1      CCTCCACCTCCGCCGCCTCCTCCCCTCCGCCCGCCCGTCCGCCGGCGGCGGCGGCGGCGG 120
                            *   * ** **   ************  *  ******    **************

consensus_12458#0      CGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGT 121
consensus_12458#2      CGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGT 112
consensus_12458#1      CGGCGGTGCGGTCGCCGCCTTCTCAACCGTAACCCCGACCCCGCGCGTCTCCGCGCTCGT 180
                       ************************************************************

consensus_12458#0      AGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGG 181
consensus_12458#2      AGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGG 172
consensus_12458#1      AGACGAGATCTGCGGCCTCACCCTCATCGAGGCCTCCTCCCTCACCGACGCCCTCCGCGG 240
                       ************************************************************

consensus_12458#0      CCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCT 241
consensus_12458#2      CCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCT 232
consensus_12458#1      CCGCCTCGGCGTCGACCAGCTCCCTCCGCTGGCCATCCTCACCGGCGGCGCGGCCCCGCT 300
                       ************************************************************

consensus_12458#0      CGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCG-AGGAGGCGAA--GGCG-------A 291
consensus_12458#2      CGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCGCAGGCAGCGCACAGGCGCACAGGCA 292
consensus_12458#1      CGCTGGCGGCGGGGCGGCCACCGGGGCGGCCGGCG-AGGAGGCGAA--GGCG-------A 350
                       *********************************** ***  *** *  ****       *

consensus_12458#0      AGGAGGAGAAGATGGCGTTCG-ACGTGAA--GCTGG-AGGGCTTCG-ACGCCGCCGCG-- 344
consensus_12458#2      GGCAGCACAGCATGGCGTTCGCACGTGCACAGCTGGCAGGGCTTCGCACGCCGCCGCGCA 352
consensus_12458#1      AGGAGGAGAAGATGGCGTTCG-ACGTGAA--GCTGG-AGGGCTTCG-ACGCCGCCGCG-- 403
                        * ** * *  ********** ***** *  ***** ********* ***********  

consensus_12458#0      -AAGCTCAAGATCATCAAAG-AGCTGAGGGCGTTCACG-AATCTGGGCCTCAAGGAGGCG 401
consensus_12458#2      CAGCTCCAAGCACATCAAAGCAGCTGAGGGCGTTCACGCAATCTGGGCCTCAAGGCAGCG 412
consensus_12458#1      -AAGCTCAAGATCATCAAAG-AGCTGAGGGCGTTCACG-AATCTGGGCCTCAAGGAGGCG 460
                        *    ****  ******** ***************** ****************  ***

consensus_12458#0      AAGG--AGCTCGTGGAG--AAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGG- 456
consensus_12458#2      CAAGGCAGCTCGTGGCAGCAAGGCGCCGGCCGAGCTGAAGGCGGGAGTCCCCAAGGCAGG 472
consensus_12458#1      AAGG--AGCTCGTGGAG--AAGGCGCCGGCCGTGCTGAAGGCGGGAGTCCCCAAGGAGG- 515
                        * *  *********    ************* ***********************  * 

consensus_12458#0      -AGGCGG-AGAGCATCGCCGAGAAG-ATGCGAGCTA-TCGGCGCCAAG--ATTGTTCTCG 510
consensus_12458#2      CAGGCGGCACAGCACGCCGCACAAGCATGCGAGCTAATCGGCGCCAAAGCATAGTACTCG 532
consensus_12458#1      -AGGCGG-AGAGCATCGCCGAGAAG-ATGCGAGCTA-TTGGCGCCAAG--ATTGTTCTCG 569
                        ****** * ****   *  * *** ********** * ********   ** ** ****

consensus_12458#0      -AATGAG--AGCACG-AGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTG 566
consensus_12458#2      CAATGCAGCAGCACGCAGAGC--------------------------------------- 553
consensus_12458#1      -AATGAG--AGCACG-AGAGCTATGTATGGCTTCGTTTCTTGATTTGTTTCTGTTTCTTG 625
                        ****    ****** *****                                       

consensus_12458#0      TATGAAGTAAAAGAGAGAATTTTGAGACCTAGGAATCAATAATTAACGAAATTCACTATG 626
consensus_12458#2      ------------------------------------------------------------
consensus_12458#1      TATGAAGTAAAAGAGAGAATTTTGAGACCTAGGAATCAATAATTAACGAAATTCACTATG 685
                                                                                   

consensus_12458#0      GGGATTTTCTCATTTGTTAGTGGAAATTCCTTTTGAACCTTGGAGTTTTGAGCTATGTGT 686
consensus_12458#2      ------------------------------------------------------------
consensus_12458#1      G----------------------------------------------------------- 686
                                                                                   

consensus_12458#0      TCATAGGCTCAGTACAGTACCAGAGCTTTGAGCTCTGTCTCTTGACTGTCTGTTTGATTG 746
consensus_12458#2      ------------------------------------------------------------
consensus_12458#1      ------------------------------------------------------------
                                                                                   

consensus_12458#0      TACGGGAAAGATATCTTTTTAATGAAAGCAGAGCAAACTAGCGGATTAAAAAAAAAAAAA 806
consensus_12458#2      ------------------------------------------------------------
consensus_12458#1      ------------------------------------------------------------
                                                                                   

consensus_12458#0      AAAAACGGGGCCTCTTGCGGAATTCTTGGCTCG 839
consensus_12458#2      ---------------------------------
consensus_12458#1      ---------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)