|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1576 fasta sequence
[CACATCCTCTTTCTCATTCATTCTCTCCCTACTTTTGCCTGGCATTTGCTTTGCGTTCGTTAACCCTAGATTATCTTAGATCTGGAAGAAGCTCTCTTAATTTTATAGAGACTTAACCTTAATACAAATAACAGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTACTGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGCGAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGATTCTAAAAGACGAATCAACTAGGGGGCAATATGACTATGCTATTGCACATCCAGAGGAGGTTTTCTACAACACTGCTCAGTACTATAGGGCATACTATGGCCATAAAACGGATCCTCGTGCTGTGTTAATTGGCCTTCTTCTAATTATTTCAGCATTTCAATACTTAAACCAGTTCGGAAGGTATAGTAAGGCCATAGAAACTGTGAAGCAAACTCCTGCTTACAAAAATAGGTTAAAAGCATTGGAGTTTGAGCGAACAGGAGGAATTTCAAGCAAAAAGAAGGGTCACAAGCAGATGGATAAGAAAGTTGAAGAAGTGCTAAGTAACGAAGTTGAGTTGCAGATCCA-GGGGGTTGAAAAACCTTCCTTATGGAGACTCTATGGTGTTCAGTTTATAC-TTCTGCCATATTCCATAGGCAAGGTGCTCAGTTGGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTACCATATGCAT-GGGAGGATGCATGCTACTTGACTCGGATGTCTCTTAAGATA-CCTGCTAATACAT-GGGAAAATATTGATGATTATA-GGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTGCAGAGATGAGAAAGGAATCAAAGCGTAGAA-GATAGCTGTAGCATATTCAACAAGAACGTGGACCGAGAACCCCCTGGATGTCAGCAACCC-AACTCCTATTTGTCAAAGCTTGTGTCACAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGCTAGTTTAGCAATCGTCTTCCCTTGCAGCCATCTGTCACTCCAAAACTTGGTAATTTCTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGATGGATAAACCAGCCCAAGGCCTTGAAGAGTCTGTTTTTTTTAACCAAAGCCATCTCATGTGCAAAGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACACACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAATTAACTACGTAATTAATTGAGACAATACAAATTAATTAAAAAAAAA]
[+] EMBL AK102565 [CACATCCTCTTTCTCATTCATTCTCTCCCTACTTTTGCCTGGCATTTGCTTTGCGTTCGTTAACCCTAGATTATCTTAGATCTGGAAGAAGCTCTCTTAATTTTATAGAGACTTAACCTTAATACAAATAACAGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTACTGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGCGAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGATTCTAAAAGACGAATCAACTAGGGGGCAATATGACTATGCTATTGCACATCCAGAGGAGG TTTCTACAACACTGCTCAGTACTATAGGGCATACTATGGCCATAAAACGGATCCTCGTGCTGTGTTAATTGGCCTTCTTCTAATTATTTCAGCATTTCAATACTTAAACCAGTTCGGAAGGTATAGTAAGGCCATAGAAACTGTGAAGCAAACTCCTGCTTACAAAAATAGGTTAAAAGCATTGGAGTTTGAGCGAACAGGAGGAATTTCAAGCAAAAAGAAGGGTCACAAGCAGATGGATAAGAAAGTTGAAGAAGTGCTAAGTAACGAAGTTGAGTTGCAGATCCA GGGGGTTGAAAAACCTTCCTTATGGAGACTCTATGGTGTTCAGTTTATAC TTCTGCCATATTCCATAGGCAAGGTGCTCAGTTGGGAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTACCATATGCAT GGGAGGATGCATGCTACTTGACTCGGATGTCTCTTAAGATA CCTGCTAATACAT GGGAAAATATTGATGATTATA GGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTGCAGAGATGAGAAAGGAATCAAAGCGTAGAA GATAGCTGTAGCATATTCAACAAGAACGTGGACCGAGAACCCCCTGGATGTCAGCAACCC AACTCCTATTTGTCAAAGCTTGTGTCACAGTACGTTGCTTTGTTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGCTAGTTTAGCAATCGTCTTCCCTTGCAGCCATCTGTCACTCCAAAACTTGGTAATTTCTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGATGGATAAACCAGCCCAAGGCCTTGAAGAGTCTGTTTTTTTTAACCAAAGCCATCTCATGTGCAAAGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACACACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAATTAACTACGTAATTAATTGAGACAATACAAATTAATT ]
[+] EMBL CA764260 [ AACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTACTGCGACGAGGATGATTGCTATGATCTTCTTGGAGTCAAGCAGGACGCGAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGATTCTAAAAGACGAATCAACTAGGGGGCAATATGACTATGCTATTGCACATCCAGAGGAGGTTTTCTACAACACTGCTCAGTACTATAGGGCATACTATGGCCATAAAACGGATCCTCGTGCTGTGTTAATTGGCCTTCTTCTAATTATTTCAGCATTTCAATACTTAAACCAGTTCGGAAGGTATAGTAAGGCCATAGAAACTGTGAAGCAAACTCCTGCTTACAAAAATAGGTTAAAAGCATTGGAGTTTGAGCGAACAGGAGGAATTTCAAGCAAAAAGAAGGGTCACAAGCAGATGGATAAGAAAGTCGAAGAAGTGCTAAGTAACGAAGTTGAGGTGCAGATCCAGGGGGGTTGAAAAACCTTNCTTATGGAGACTCTATGGNGGTCAGNTTATACTTTCTGNCATATTCCATAGGCAAGGNGCTCAGTTGGNAAATTTGGTGGNTTTGGAGATACCGGGTNAAGAAATTACCATACGCATGGGGAGGATGCATGCTACTTGACTTNGGTGNCTCTTAA ANACCCGGCTAATACATGGGGAAAATATTGGTGATTNTAGGGAAGGAGAATCTTG ]
[+] EMBL CB646927 [ AAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTACTGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGCGAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGATTCTAAAAGACGAATCAACTAGGGGGCAATATGACTATGCTATTGCACATCCAGAGGAGGTTTTCTACAACACTGCTCAGTACTATAGGGCATACTATGGCCATAAAACGGATCCTCGTGCTGTGTTAATTGGCCTTCTTCTAATTATTTCAGCATTTCAATACTTAAACCAGTTCGGAAGGTATAGTAAGGCCATAGAAACTGTGAAGCAAACTCCTGCTTACAAAAATAGGTTAAAAGCATTGGAGTTTGAGCGAACAGGAGGAATTTCAAGCAAAAAGAAGGGTCACAAGCAGATGGATAAGAAAGTTGAAGAAGTGCTAAGTAACGAAGTTGAGTTGCAGATCCA GGGGGTTGAAAAACCTTCCTTATGGAGACTCTATGGTGTTCAGTTTATAC TTCTGCCATATTCCATAGGCAAGGTGCTCAGTTGGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTACCATATGCAT GGGAGGATGCATGCTACTTG ]
[-] EMBL CB646928 [ GGCAAGGTGCTCAGTTGGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTACCATATGCAT GGGAGGATGCATGCTACTTGACTCGGATGTCTCTTAAGATA CCTGCTAATACAT GGGAAAATATTGATGATTATA GGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTGCAGAGATGAGAAAGGAATCAAAGCGTAGAAGGATAGCTGTAGCATATTCAACAAGAACGTGGACCGAGAACCCCCTGGATGTCAGCAACCC AACTCCTATTTGTCAAAGCTTGTGTCACAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGCTAGTTTAGCAATCGTCTTCCCTTGCAGCCATCTGTCACTCCAAAACTTGGTAATTTCTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGATGGATAAACCAGCCCAAGGCCTTGAAGAGTCTGTTTTTTTTAACCAAAGCCATCTCATGTGCAAAGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACACACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAATTAACTACGTAATTAATTGAGACAATACAAATTAATT ]
[-] EMBL CA763354 [ TTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTACCATACGCAT GGGAGGATGCATGCTACTTGACTNGGATGTCTCTTAAGATA CCTGCTAATACAT GGGAAAATATTGATGATTATA GGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTGCAGAGATGAGAAAGGAATCAAAGCGTAGAA GATAGCTGTAGCATATTCAACAAGGACGTGGACCGAGAACCCCCTGGATGTCAGCAACCCAAACTCCTATTTGTCAAAGCTTGTGTGACAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGCTAGTTTAGCAATCGTCTTCCCTTGCAGCCATCTGTCACTCCAAAACTTGGTAATTTCTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGTGTTTTGATGGATAAACCAGCCCAAGGCCTTGAAGAGTCTTTTTTTTTTAACCAAAGCCATCTCATGTGCAAAGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACACACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAATTAACTACGTAATTAATTGAGACAATACAAATTAATTAAAAAAAAA]
[+] EMBL CF196299 [ TTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGCTAGTTTAGCAATCGTCTTCCCTTGCAGCCATCTGTCACTCCAAAACTTGGTAATTTCTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGATGGATAAACCAGCCCAAGGCCTTGAAGAGTCTGTTTTTTTTAACCAAAGCCATCTCATGTGCAAAGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACACACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAATTAACTACGTAATTAATTGAGACAATACAAATTAA ]
consensusID : consensus_12467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[TCTTTCTCCTTCATTCTCTCCCTACTTTTGCCTGGCATTTGCTTTGCGTTCGTTAACCCTAGATTATCTTAGATCTGGAAGAAGCTCTCTTAATTTTATAGAGACTTAACCTTAATACAAATAACAGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTACTGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGCGAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGGTTCTGTACGTTTTGTTATTCATGAATTAAAGTTTGCATTTCTTTCTGGCTGTGGTTGAGAACAATCTATGGTACCTAATATCTGATGCTTAATTCTAAATACTTGTTACTATTTTTCAATAGTTTCATAATTGCACCAACATAGTTGCTAATTGTACAGTTAATATTGAGCAATTCGTTGCATTAGCTAAAGTTTTGCGAAGAAAGAGTGCAGTAGAGTTTAAGCTTGAGTCCATCTGATTTTAATGGCTTTGTGAAATGCCACACTATGGTGTTCTTTCACTAATTTAGCTAATAAATCTGTTTTGTGAGCTCATTCA]
[+] EMBL CB668959 [TCTTTCTCCTTCATTCTCTCCCTACTTTTGCCTGGCATTTGCTTTGCGTTCGTTAACCCTAGATTATCTTAGATCTGGAAGAAGCTCTCTTAATTTTATAGAGACTTAACCTTAATACAAATAACAGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTACTGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGCGAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGGTTCTGTACGTTTTGTTATTCATGAATTAAAGTTTGCATTTCTTTCTGGCTGTGGTTGAGAACAATCTATGGTACCTAATATCTGATGCTTAATTCTAAATACTTGTTACTATTTTTCAATAGTTTCATAATTGCACCAACATAGTTGCTAATTGTACAGTTAATATTGAGCAATTCGTTGCATTAGCTAAAGTTTTGCGAAGAAAGAGTGCAGTAGAGTTTAAGCTTGAGTCCATCTGATTTTAATGGCTTTGTGAAATGCCACACTATGGTGTTCTTTCACTAATTTAGCTAATAAATCTGTTTTGTGAGCTCATTCA]
consensusID : consensus_12467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[AAAAGCATTGGAGTTTGAGGGAACAGGAGGAATTTCAAGCAAAAAGAAGGGTCCCAAGCAGATGGATAAGAAAGTTGAAGAAGTGCTAAGTAACGAAGTTGAGTTGCAGATCCAGGGGGTTGAAAAACCTTCCTTATGGAGACTTTATGGGGTTCAGTTTATACTTTTGCCATATTCCATAGGCAAGGGGGTCAGTTGGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTTCCATATGCATGGGGGGATGCATGCTACTTGACTCGGATGTTTTTTAAGATACCTGCTAATACATGGGAAAATATTGATGATTATAGGAAGGGGAATTTTGTCATGAAACGCCTTTGGGAAAAGAACAATATGGAGAGGTATTTTGCAGAGATGAGAAAGGAATCAAAGGGTAGAAGATAGCTGTAGCATATTCAACAAGAACGTGGGCCGAGAACCCCCTGGATGTCAGCAACCCAACTCCTATTTGTCAAAGCTTGTGTCCCAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGGTAGTTTAGCAATTGTTTTCCCTTGCAGCCATTTGTCACTCCAAAACTTGGTAATTTTTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATAAAAAGA]
[-] EMBL CB668960 [AAAAGCATTGGAGTTTGAGGGAACAGGAGGAATTTCAAGCAAAAAGAAGGGTCCCAAGCAGATGGATAAGAAAGTTGAAGAAGTGCTAAGTAACGAAGTTGAGTTGCAGATCCAGGGGGTTGAAAAACCTTCCTTATGGAGACTTTATGGGGTTCAGTTTATACTTTTGCCATATTCCATAGGCAAGGGGGTCAGTTGGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTTCCATATGCATGGGGGGATGCATGCTACTTGACTCGGATGTTTTTTAAGATACCTGCTAATACATGGGAAAATATTGATGATTATAGGAAGGGGAATTTTGTCATGAAACGCCTTTGGGAAAAGAACAATATGGAGAGGTATTTTGCAGAGATGAGAAAGGAATCAAAGGGTAGAAGATAGCTGTAGCATATTCAACAAGAACGTGGGCCGAGAACCCCCTGGATGTCAGCAACCCAACTCCTATTTGTCAAAGCTTGTGTCCCAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGAGGTAGTTTAGCAATTGTTTTCCCTTGCAGCCATTTGTCACTCCAAAACTTGGTAATTTTTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATAAAAAGA]
consensusID : consensus_12467#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[TGGTGTTCAGTTAATACTTCGCCCATATCCCCATAGCCCAAGGGGTGGCCTCCAGTTTTGGAAATTTTGTTGTTTTGGAGATACCGGATAAAGAAATTACCATACGCATGGGAGGATGCATGCTACTTGACTCGGATGTCTCTTAAGATACCTGCTAATACATGGGAAAATATTTGATGATTATTAGGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTTGCCAGAGATGAGAAAGGAATCAAGCGTAGAAGATAGCTGTAGCATATTCAACAAGAACGTGGACCGAGAACCCCCTGGATGTCACAACCCAACTCCTATTTGTCAAGCTTGTGTGACGTACGTTGCTTTATTCCCTTTTAGGGATTAAAACCAAGAGATTAGGAGCTAGTTTACCATCGTCTTCCCTCCACCCATCTGTCACTCCAAACTTGGTAATTTCCCATTCCCAACCTGTAGTTTTGAAAAACATCAAAAGGGTGTTTTGATGGATAAAAAAAA]
[+] EMBL BI804482 [TGGTGTTCAGTTAATACTTCGCCCATATCCCCATAGCCCAAGGGGTGGCCTCCAGTTTTGGAAATTTTGTTGTTTTGGAGATACCGGATAAAGAAATTACCATACGCATGGGAGGATGCATGCTACTTGACTCGGATGTCTCTTAAGATACCTGCTAATACATGGGAAAATATTTGATGATTATTAGGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTTGCCAGAGATGAGAAAGGAATCAAGCGTAGAAGATAGCTGTAGCATATTCAACAAGAACGTGGACCGAGAACCCCCTGGATGTCACAACCCAACTCCTATTTGTCAAGCTTGTGTGACGTACGTTGCTTTATTCCCTTTTAGGGATTAAAACCAAGAGATTAGGAGCTAGTTTACCATCGTCTTCCCTCCACCCATCTGTCACTCCAAACTTGGTAATTTCCCATTCCCAACCTGTAGTTTTGAAAAACATCAAAAGGGTGTTTTGATGGATAAAAAAAA]
consensusID : consensus_12467#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[TCTCCCGTCTCCGTATCCTCCGCTCCTTCGCCATCTCGCGGTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCTGGCGAGGAGAGCAGAGCAGGGGAGGGGATCCTGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGNCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTNNTCGCCTCCTNCTCCTCGTCGTCCTNCTCCTCGTGCCAGTNTGCAACGGCATCTACTGCGAN]
[+] EMBL C28280 [TCTCCCGTCTCCGTATCCTCCGCTCCTTCGCCATCTCGCGGTCGCGGCTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCTGGCGAGGAGAGCAGAGCAGGGGAGGGGATCCTGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGCCCCCCCATGTCCCAAGTTGGATCCGNCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCTCCTNNTCGCCTCCTNCTCCTCGTCGTCCTNCTCCTCGTGCCAGTNTGCAACGGCATCTACTGCGAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 CACATCCTCTTTCTCATTCATTCTCTCCCTACTTTTGCCTGGCATTTGCTTTGCGTTCGT 60
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 TAACCCTAGATTATCTTAGATCTGGAAGAAGCTCTCTTAATTTTATAGAGACTTAACCTT 120
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 AATACAAATAACAGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAACCCCATGC 180
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 CCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGCGGCTGCTCCT 240
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 CCTCCTCGCCTCCTCCTCCTCGTCGTCCTCCTCCTCGTGCCAGTCTCCAACGCCATCTAC 300
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 TGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGCGAACGTATCGGAG 360
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 ATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAAGAATCCTGATCCG 420
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 GAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGATTCTAAAAGACGAATCA 480
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 ACTAGGGGGCAATATGACTATGCTATTGCACATCCAGAGGAGGTTTTCTACAACACTGCT 540
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 CAGTACTATAGGGCATACTATGGCCATAAAACGGATCCTCGTGCTGTGTTAATTGGCCTT 600
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 CTTCTAATTATTTCAGCATTTCAATACTTAAACCAGTTCGGAAGGTATAGTAAGGCCATA 660
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 --------------------------------------AAAAGCATTGGAGTTTGAGGGA 22
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 GAAACTGTGAAGCAAACTCCTGCTTACAAAAATAGGTTAAAAGCATTGGAGTTTGAGCGA 720
consensus_12467#1 ------------------------------------------------------------
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ACAGGAGGAATTTCAAGCAAAAAGAAGGGTCCCAAGCAGATGGATAAGAAAGTTGAAGAA 82
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 ACAGGAGGAATTTCAAGCAAAAAGAAGGGTCACAAGCAGATGGATAAGAAAGTTGAAGAA 780
consensus_12467#1 ------------TCTTTCTCCTTCATTCTCTCCCTACTTTTGCCTGGCATTTGCTTTGCG 48
consensus_12467#4 ------------TCTCCCGTCTCCGTATCCTCCGCTCCTTCGCC--------ATCTCGCG 40
consensus_12467#2 GTGCTAAGTAACGAAGTTGAGTTGCAGATCCAGGGGGTTGAAAAACCTTCCTTATGGAGA 142
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 GTGCTAAGTAACGAAGTTGAGTTGCAGATCCAGGGGGTTGAAAAACCTTCCTTATGGAGA 840
consensus_12467#1 TTCGTTAACC-CTAGATTATCTTAGATCTGGAAGAAGCTCTCTTAATTTTATA--GAGAC 105
consensus_12467#4 GTCGCGG-----CTGAACAGGGGAGGGGGAGGGGCGCCGATCTCCATCTGGCGAGGAGAG 95
consensus_12467#2 CTTTATGGGGTTCAGTTTATACTTTTGCCATATTCC-ATAGGCAAGGGGGT------CAG 195
consensus_12467#3 -----TGGTGTTCAGTTAATACTTCGCCCATATCCCCATAGCCCAAGGGGTGGCCTCCAG 55
consensus_12467#0 CTCTATGGTGTTCAGTTTATACTTCTGCCATATTCC-ATAGGCAAGGTGCT------CAG 893
consensus_12467#1 TTAACCTTAATACAAATAACAGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAA 165
consensus_12467#4 CAGAGCAGGGGAGGGGATCCTGATTGTTTGTTCCCCCAAAGTTTGGGGGTTCAACTGAAA 155
* * ** * ** * * * *
consensus_12467#2 TT--GGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTTCCATATGCATGGGGG 253
consensus_12467#3 TTTTGGAAATTTTGTTG-TTTTGGAGATACCGGATAAAGAAATTACCATACGCATGGGAG 114
consensus_12467#0 TT--GGAAATTTTGTTGGTTTTGGAGATACCGGATAAAGAAATTACCATATGCATGGGAG 951
consensus_12467#1 CCCCATGCCCCCCCATGTCCCAAGTTGGATCCGCCGGTGAGGGATCCAATTCCATGGC-G 224
consensus_12467#4 CCCCATGCCCCCCCATGTCCCAAGTTGGATCCGNCGGTGAGGGATCCAATTCCATGGC-G 214
** * * * * ** *** ***** *
consensus_12467#2 GATGCATGCTACTTGACTCGGATGTTTTTTAAGATACCTGCTAATACATGGGAAAATATT 313
consensus_12467#3 GATGCATGCTACTTGACTCGGATGTCTCTTAAGATACCTGCTAATACATGGGAAAATATT 174
consensus_12467#0 GATGCATGCTACTTGACTCGGATGTCTCTTAAGATACCTGCTAATACATGGGAAAATATT 1011
consensus_12467#1 GCTGC-TCCTCCTC--CTCGCCTCCTCCTCCTCGT-CGTCCTCCTCCTCGTGCCAGTCTC 280
consensus_12467#4 GCTGC-TCCTCCTN--NTCGCCTCCTNCTCCTCGT-CGTCCTNCTCCTCGTGCCAGTNTG 270
* *** * ** ** *** * * * * * ** * * * * * * *
consensus_12467#2 -GATGATTAT-AGGAAGGGGAATTTTGTCATGAAACGCCTTTGGGAAAAGAACAATATGG 371
consensus_12467#3 TGATGATTATTAGGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGG 234
consensus_12467#0 -GATGATTAT-AGGAAGGAGAATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGG 1069
consensus_12467#1 CAACGCCATCTACTGCGAGGAGGATGATTGCTATGATCTTCTAGGAGTCAAGCAGGACGC 340
consensus_12467#4 CAACGGCATCTACTGCGAN----------------------------------------- 289
* * * *
consensus_12467#2 AGAGGTAT-TTTGC-AGAGATGAGAAAGGAATCAAAGGGTAGAAGATAGCTGTAGCATAT 429
consensus_12467#3 AGAGGTATATTTGCCAGAGATGAGAAAGGAATCAA-GCGTAGAAGATAGCTGTAGCATAT 293
consensus_12467#0 AGAGGTAT-ATTGC-AGAGATGAGAAAGGAATCAAAGCGTAGAAGATAGCTGTAGCATAT 1127
consensus_12467#1 GAACGTATCGGAGATCAAGAAAGCCTACTACAAGCTCTCTCTCAAACACCATCCGGATAA 400
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 TCAACAAGAACGTGGGCCGAGAACCCCCTGGAT----GTCAGCAACCCAACTCCTATTTG 485
consensus_12467#3 TCAACAAGAACGTGGACCGAGAACCCCCTGGAT----GTCA-CAACCCAACTCCTATTTG 348
consensus_12467#0 TCAACAAGAACGTGGACCGAGAACCCCCTGGAT----GTCAGCAACCCAACTCCTATTTG 1183
consensus_12467#1 GAATCCTGATCCGGAGTCACGGAAGCTGTTTGTCAAGATTGCCAATGCTTACGAGGTTCT 460
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 TCAAAGCTTGTGTCCCAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGAT 545
consensus_12467#3 TCAA-GCTTGTGTGAC-GTACGTTGCTTTATT-CCCTTTTAGGGATTAAAACCAAGAGAT 405
consensus_12467#0 TCAAAGCTTGTGTCACAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGAT 1243
consensus_12467#1 GTACGTTTTGTTATTCATGAATTAAAGTTTGCATTTCTTTCTGGCTGTGGTTGAGAACAA 520
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 TAGGAGGTAGTTTAGCAATTGTTTTCCCTTGCAGCCATTTGTCACT------CCAAAACT 599
consensus_12467#3 TAGGAGCTAGTTTACCA-TCGTCTTCCCTC-CACCCATCTGTCACT------CCAAA-CT 456
consensus_12467#0 TAGGAGCTAGTTTAGCAATCGTCTTCCCTTGCAGCCATCTGTCACT------CCAAAACT 1297
consensus_12467#1 TCTATGGTACCTAATATCTGATGCTTAATTCTAAATACTTGTTACTATTTTTCAATAGTT 580
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 TGGTAATTTTTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGTTGGA 659
consensus_12467#3 TGGTAATTTCCCATTCCCAACCTGTAGTTTTGAAAAACATCAAAAGGGTGTTTTGATGGA 516
consensus_12467#0 TGGTAATTTCTCCATTTCAAACTGTAGTTTTGAAAACATCAAAAAGGGAGTTTTGATGGA 1357
consensus_12467#1 TCATAATTGCACCAACATAGTTGCTAATTGTACAGTTAATATTGAGCAATTCGTTGCATT 640
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATAAAAAGA----------------- 702
consensus_12467#3 TAAAAAAAA--------------------------------------------------- 525
consensus_12467#0 TAAACCAGCCCAAGGCCTTGAAGAGTCTGTTTTTTTTAACCAAAGCCATCTCATGTGCAA 1417
consensus_12467#1 AGCTAAAGTTTTGCGAAGAAAGAGTGCAGTAGAGTTTAAGCTTGAGTCCATCTGATTTTA 700
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 AGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACA 1477
consensus_12467#1 ATGGCTTTGTGAAATGCCACACTATGGTGTTCTTTCACTAATTTAGCTAATAAATCTGTT 760
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ------------------------------------------------------------
consensus_12467#3 ------------------------------------------------------------
consensus_12467#0 CACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAATTAACTA 1537
consensus_12467#1 TTGTGAGCTCATTCA--------------------------------------------- 775
consensus_12467#4 ------------------------------------------------------------
consensus_12467#2 ---------------------------------------
consensus_12467#3 ---------------------------------------
consensus_12467#0 CGTAATTAATTGAGACAATACAAATTAATTAAAAAAAAA 1576
consensus_12467#1 ---------------------------------------
consensus_12467#4 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||