These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1375 fasta sequence [CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG-CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA-GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA-CCCGGGCATGACATCACTACATATTGTAGCCA-TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA-TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAATTTTGAAAATATACTCTTTCTTTTTCATATTTTACATTTATATACACGTCTGAG] [+] EMBL CB666445 [CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACT ] [+] EMBL CB666354 [CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAA ] [+] EMBL AK073266 [ TTCTCCACCATTTCTCCTTGTCTCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACCACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAGGAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAGGAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCGCTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAGTTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAATTTTGAAAATATACTCTTTCTTTTTCATATTTTACATTTATATACACGTCTGAG] [+] EMBL OSR29471A [ GCCGCCAAGGATACCATNGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCCGATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCNTCACCCAGGAGGAGGCCGACCTCGCCCTTGCCCGCTTCCTCCAGGAGCAGGAGCGGGCGTACATNATGCTCAGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTG ] [-] EMBL CB666446 [ GCAGGACGCCGAGGAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAA TTTGAAA ] [-] EMBL CB666355 [ GAGTGATGGACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGATGATGAAGATGAAGACGGGGATGATCCACAGGATG CATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA TTCAAAGCAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAAATTTTGAAAA ] [+] EMBL BM420038 [ CCACAGGATGCCATGGGAAGATGTTGATCCAGATGAATATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTCTCTGCTGATACGCTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAA GCAAGACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACC ATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATT GGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA aaaaaaa ] [+] EMBL BI809614 [ AGATAACGCCAGACGGCAACATGGAACAATGTGTTATTTCCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACACCCCGGGCATGACATCACTACATATTGTAGCCACTTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAA aaaaaa ] [+] EMBL C27882 [ GACGGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACA CCCGGGCATGACATCACTACATATTGTAGCCA TTATGGGCGTATAATTTAAAAGAAGTAGCGGCA TTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTTCAAAGCAATTAATTTATA ] consensusID : consensus_12469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [ACGGCAACATGGANCAATGTGTTATTTGCCGTGTGNAATTTGAGGAAGGTGAATCATTGGTTGCANTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTNAAGTTCCTACTTCACAGGACACCCGGGCATGACATCACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAGCAATTAATTTATAGTCTCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU100891 [ACGGCAACATGGANCAATGTGTTATTTGCCGTGTGNAATTTGAGGAAGGTGAATCATTGGTTGCANTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTATGCCCTATGTGCAGTGCTNAAGTTCCTACTTCACAGGACACCCGGGCATGACATCACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAGCAATTAATTTATAGTCTCCAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12469#0 CGTTCACCCACGCCACGCCGCCACCGCCTCGCTTTTCCTTCTCCACCATTTCTCCTTGTC 60 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 TCCCACCACCACTTCCCCCCTTCTCCGATCCCTCCTCCCATGGACGCCGCCAAGGATACC 120 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 ACCGCCGCCGCCGCCGACCAAAACCCTACCCCCAACCCTCCCACCGCCGCAGCTCCACCC 180 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 GATGACTCCGCGGCGGCGGCGGCGGCGGGGAGACGGCCCTTCACCAGCCTCACCCAGGAG 240 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 GAGGCCGACCTCGCCCTCGCCCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTC 300 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 AGCGCGCACCACGGCGGCGACTACGCGGCCTCCGATGGTGGGAGCTACGAGTTTGACGAG 360 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 GAAGGGGAGGGGAGCGATTTTGAGGACGAGGATGGGGACGGGGACGGCGACGGGGAGGCG 420 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 CTGGATGAGGACGAGGAGGTGGCCGACGCAGACGCAGACGCCGCCGGTGACCCGGCTGAG 480 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 TTGGACCCCGCGCGGTACGAGGACGACGAGGCCTTCGCGCGGGCGCTGCAGGACGCCGAG 540 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 GAGCGCGAGGTCGCCGGCCGCCTCATGGCGCTCGCGGGCCTCAGTGATTGGCGAGTGATG 600 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 GACCATGATGATGACGATGTTGATGATGATGATGATGAGGATGATGATGATGATGATGAT 660 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 GATGAAGATGAAGACGGGGATGATCCACAGGATGCATGGGAAGATGTTGATCCAGATGAA 720 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 TATTCTTATGAGGAGCTGGTTGCATTGGGTGAAGTAGTTGGTACGGAAAGCAGAGGCCTC 780 consensus_12469#1 ------------------------------------------------------------ consensus_12469#0 TCTGCTGATACACTTGCTTCATTACCTTCAATAACTTATCGAGCACAAGATAAGCAAGAC 840 consensus_12469#1 ----------------------------------------------------------AC 2 ** consensus_12469#0 GGCAACATGGAACAATGTGTTATTTGCCGTGTGGAATTTGAGGAAGGTGAATCATTGGTT 900 consensus_12469#1 GGCAACATGGANCAATGTGTTATTTGCCGTGTGNAATTTGAGGAAGGTGAATCATTGGTT 62 *********** ********************* ************************** consensus_12469#0 GCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAAT 960 consensus_12469#1 GCANTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAAT 122 *** ******************************************************** consensus_12469#0 AAGGTATGCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACACCCGGGCATGACAT 1020 consensus_12469#1 AAGGTATGCCCTATGTGCAGTGCTNAAGTTCCTACTTCACAGGACACCCGGGCATGACAT 182 ************************ *********************************** consensus_12469#0 CACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATAC 1080 consensus_12469#1 CACTACATATTGTAGCCATTATGGGCGTATAATTTAAAAGAAGTAGCGGCAGCTTGATAC 242 ************************************************************ consensus_12469#0 TTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACT 1140 consensus_12469#1 TTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTCAGGTCTCTGTACT 302 ************************************************************ consensus_12469#0 TGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCC 1200 consensus_12469#1 TGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCC 362 ************************************************************ consensus_12469#0 ATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAG 1260 consensus_12469#1 ATGTATGATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAG 422 ************************************************************ consensus_12469#0 CAATTAATTTATAGTCTCCTGGTGGCCTGAGGCCTGTTGTAGCCTATAAGTTCCGAAAAA 1320 consensus_12469#1 CAATTAATTTATAGTCTCCAAAAAAAAAAAAAAAAAAAA--------------------- 461 ******************* * consensus_12469#0 ATTTTGAAAATATACTCTTTCTTTTTCATATTTTACATTTATATACACGTCTGAG 1375 consensus_12469#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||