These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 565 fasta sequence [AGAGAAGCACACCACACTCCAAAGAGTTGAATAGAGCCATCGACCAGTGAAGGCTGTGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC-TCAAGAGGCTCCAGGAGTTCCACCGGAGCATCA-CCCACCCGAGCTTCACCTCCGCCGACATGCTCAGCCGCTTCTCCAGCTTCAACTCC-A-TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC-TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA-TTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCATCTGACAGAATTTCCTGAAAAAAAAAAAAAAA] [+] EMBL AK068326 [AGAGAAGCACACCACACTCCAAAGAGTTGAATAGAGCCATCGACCAGTGAAGGCTGTGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCCAGGAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCGCCGACATGCTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAATTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA TTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCATCTGACA ] [+] EMBL CF302464 [ GAAGCACACCACACTCCAAAGAGTTGAATAGAGCCATCGACCAGTGAAGGCTGTGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCCATTAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCGCCTTCTTTCTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATA ] [+] EMBL CF281033 [ ACCACACTCCAAAGAGTTGAATAGAGCCATCGACCAGTGAAGGCTGTGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCTAGGAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCTTTTACATGCTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA TTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCATCTGACAGAATTTCCTGAAAAAAAAAAAAAA ] [+] EMBL OS1321685 [ ACACTCCAAAGAGTTGAATAGAGCCATCGACCAGTGAAGGCTGTGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCCAGGAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCGCCGACATGCTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAATTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTT ] [+] EMBL CF300067 [ TGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCCAGGAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCGCCGACACGCTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCCTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAAC ] [+] EMBL CA756596 [ ATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACCCTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCCAGGAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCGCCGACATGCTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTCTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATGCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATANTTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCATCTGACAGAATTTCCTGANAAAAAA ] [-] EMBL BE229325 [ GCATAATGTTCANCCCA NGA CCTTGTTTTTGGGCCTTGCCGGCGGATNGTCTTTTTCCTTCAAGAGGNTCCAGGAGTTCCACNGG GCATCA CCCACCCGAGTTTCACNTCCGCCGACATGTTCAGCCG TTCTCCAGCTTCAACTCC A NGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTACTTCCCTGCAGAGCTGAACTGATTNTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTNTTAACTGTTCTGAAGAACTCGTCTGTTCGTGAAAGTNGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA TTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCATNTGACAG ] [+] EMBL AU174362 [ CCTTGCCGGCGGATCGTCCTCTTCC TCAAGAGGCTCCAGGAGTTCCACCGGAGCATCA CCCACCCGAGCTTCACCTCCGCCGACATGNTCAGCCGCTTCTCCAGCTTCAACTCC A TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTNTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTNTTAACTGTTNTGAAGAACTCGTCTGTTCGTGAAAATTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA TTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCAaaaaa ] [-] EMBL CF302463 [ TCCAGGAGTTCCACCGGAGCATCACCCCACCCGAG TTCACCTCCGCCGACATGGTCAGCCGCTTTTCCAGCTTCAACTCCAA TGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTTTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTTTTAACTGTTTTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACAATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA TTGGTGTTATGAGAGAGATAAAATTTCAGGTTGCATCTGACAGAATTTCCTGTAAAAAAAAAAAAA ] [-] EMBL CF281032 [ CTCCGCCGACATGGTCAGCCGCTTTTCCAGCTTCAACTCC ACTGGCCCTGATGCTGTGAAGGACTTGGAGGCAGCAGGTAC TCCCTGCAGAGCTGAACTGATTTTTAACTGTTTTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTTTTAACTGTTTTGAAGAACTCGTCTGTTCGTGAAAGTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTACCATAAGAACAGTATAGTAGTTTGAGACTTTGAGATGTAGTAGACTTACTTCAGAACTTGCTGAAAGTTGTATATA TTGGTGTTATGAGAGAGATAAAATTTCAGGCTGCATTTGACAGAATTTCCTGAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||