These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 838 fasta sequence [TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCTTCAAATTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCGGCGAAGAGAAGGGGAAGGGAGGAGGC] [-] EMBL AU082958 [TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCTTNAAANTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGAT ] [+] EMBL CB653412 [ tccTTTTTTTTGGGGCTTCAAATTCATATGCCATAGTTCAATCCATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGG ] [-] EMBL CB684833 [ TGGGGCTTCAAATTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAGGTAC ] [-] EMBL AK062641 [ TGGGGCTTCAAATTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTAC ] [+] EMBL CB653281 [ GGGGCTTCAAATTCATATGCCATAGTTCAATACATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGG ] [-] EMBL CB653411 [ GTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATTTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTCGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACCGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTGGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGAGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCGGCGAAGAGAAGGGGAAGGGAGGAGGC] [-] EMBL CB653280 [ GCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCCGAGGAACTGGCTCCACCCTTCTCTGCCTTTGTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTGGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCGGCGAAGAGAAGGGGAGGAGAGGAGGC] consensusID : consensus_12476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence [TTTTTTTTTTAGCTCGCTGTGAAAATCATCTAACTGATTTACAAGTGTGCACATGGCCGAAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTTGTACTCAGGGTCAACATAGGAATCAGGGAGGACAAACAGAACACCAGGAAGCCCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAAAGTATCTCTCGCANGAGACGTTGTAGATCTTCTTCTTCGGCCTCCTCCTCAATTCCGAGGGACCTTGGGNGAGGGTCTTGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGNG-CCTCCCCGGNTGGGCTTGTNCATCACGATGAGCCAGTGCTCGTANTCGGAACCGGGGAANAGCGGGGGCAANTCCGTCGGCGCGCGGCGGGAGAGGAGCCTCCGCGCGGCGGCGGCGGCGGCGGCGGCCATCGCGGGGTAAAACCCTAGCGGAGTGAAGGGAGAAGG] [-] EMBL AU174299 [TTTTTTTTTTAGCTCGCTGTGAAAATCATCTAACTGATTTACAAGTGTGCACATGGCCGAAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTT ] [-] EMBL AU030560 [ ttttttTGGCCGAAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTTGTACTCAGGGTCAACATAGGAATCAGGGAGGACAAACAGAACACCAGGAAGCCCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAAAGTATCTCTCGCANGAGACGTTGTAGATCTTCTTCTTCGGCCTCCTCCTCAATTCCGAGGGACCTTGGGNGAGGGTCTTGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGNG CCTCCCCGGNTGGGCTTGTNCATCACGATGAGCCAGTGCTCGTANTCGGAACCGGGGAANAGCGGGGGCAAN ] [-] EMBL AK103500 [ TTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTTGTACTCAGGGTCGACATAGGAATCAGGGAGGACAAACAGAACACCAGGAAG CCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAAAGTATCTCTCGCAGGAGACGTTGTAGATCTTCTTCTTC GCCTCCTCCTCACTTCCGA GGACCTT GGCGAGGGTC TGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGCGCCCTCCCCGCCT GGCTTGTCCATCACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAACAGCGGGGCCATCTCCGTCGGCGCGCGGCGGGAGAGGAGCCTCCGCGCGGCGGCGGCGGCGGCGGCGGCCATCGCGGGGTAAAACCCTAGCGGAGTGAAGGGAGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12476#0 TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCT 60 consensus_12476#1 -TTTTTTTTTTAGCTCGCTGTGAAAATCATCTAACTGATTTACAAGTGTGCACATGGCCG 59 * ******** * * * * * * * *** * * ** * consensus_12476#0 TCAAATTCATATGCCATAGTTCAAT--AGATTAG------TCGA---TTGAAGTAG--AC 107 consensus_12476#1 AAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTAC 119 * **** ** * * ** * * ** ** * ** **** ** consensus_12476#0 AAAAC---ATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCAT--A 162 consensus_12476#1 AGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGA 179 * ** ****** * ***** ** ** * ** * * **** * ** * consensus_12476#0 CAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAG---TCGAT 219 consensus_12476#1 CAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAG 239 ***** *** *** ** * * * ** * ** ** * consensus_12476#0 GCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCC--TGATTCTCCCT 277 consensus_12476#1 CCACCCAGGCGGCTTT--GTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCT 297 ** * ** * * * ** * ** * * * * ** ** ******** consensus_12476#0 CCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAAC 337 consensus_12476#1 CCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGAC 357 ** * * ** ** ** * **** ****** ** ****** ****** ** ** ** consensus_12476#0 TGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAA 397 consensus_12476#1 AGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAG 417 ** ** **** ******** ** ** ** ** ******** ***** ** ** ** * consensus_12476#0 CTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAAC 457 consensus_12476#1 CTCAGCTCCATAGTCCTTGTACTCAGGGTCAACATAGGAATCAGGGAGGACAAACAGAAC 477 ****** ************* *** * ***************** ** ***** ***** consensus_12476#0 ACCTGGTAGCCC-TTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAA 516 consensus_12476#1 ACCAGGAAGCCCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAA 537 *** ** ***** *************** ** ***** ** ******** ***** **** consensus_12476#0 AGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCG-CCTCCTCCTCACTTCCCACG 575 consensus_12476#1 AGTATCTCTCGCANGAGACGTTGTAGATCTTCTTCTTCGGCCTCCTCCTCAATTCCGAGG 597 **** * ***** ** ******** ************* *********** **** * * consensus_12476#0 -ACCTTGG-CGAGGGTCT-GGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCG 632 consensus_12476#1 GACCTTGGGNGAGGGTCTTGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGNGCCTCCC 657 ******* ******** ************* ******************* *** * consensus_12476#0 CCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGC 692 consensus_12476#1 CGGNTGGGCTTGTNCATCACGATGAGCCAGTGCTCGTANTCGGAACCGGGGAANAGCGGG 717 * * ******** *** ******************** *** * ******** ***** consensus_12476#0 GCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGAC 752 consensus_12476#1 GGCAANTCCGTCGGCGCGCGGCGGGAGAGGAGCCTCCGC-GCGGCGGCGG---CGGCGGC 773 * ** ***** ********* *** * * ** ****** ** ** * consensus_12476#0 TCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCG 812 consensus_12476#1 GGCGGCCATCGCGGGGTAAAAC-------CCTAGCGGAGTGAAGGGAG--AAGG------ 818 ***** **** * * * ** ** * * * ** * * ** consensus_12476#0 GCGAAGAGAAGGGGAAGGGAGGAGGC 838 consensus_12476#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||