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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 838 fasta sequence
[TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCTTCAAATTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCGGCGAAGAGAAGGGGAAGGGAGGAGGC]
[-] EMBL AU082958 [TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCTTNAAANTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGAT ]
[+] EMBL CB653412 [ tccTTTTTTTTGGGGCTTCAAATTCATATGCCATAGTTCAATCCATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGG ]
[-] EMBL CB684833 [ TGGGGCTTCAAATTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAGGTAC ]
[-] EMBL AK062641 [ TGGGGCTTCAAATTCATATGCCATAGTTCAATAGATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTAC ]
[+] EMBL CB653281 [ GGGGCTTCAAATTCATATGCCATAGTTCAATACATTAGTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGG ]
[-] EMBL CB653411 [ GTCGATTGAAGTAGACAAAACATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCATACAAAAAATTTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTCGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACCGTACCGGGGTCTATCTTGTGCTCTCTGAGGAACTGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTGGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGAGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCGGCGAAGAGAAGGGGAAGGGAGGAGGC]
[-] EMBL CB653280 [ GCAGCAGCATACAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAGTCGATGCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCCTGATTCTCCCTCCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCCGAGGAACTGGCTCCACCCTTCTCTGCCTTTGTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAACTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAACACCTGGTAGCCCTTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAAAGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCGCCTCCTCCTCACTTCCCACGACCTTGGCGAGGGTCTGGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCGCCGCCGGGCTGGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGCGCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGACTCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCGGCGAAGAGAAGGGGAGGAGAGGAGGC]
consensusID : consensus_12476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence
[TTTTTTTTTTAGCTCGCTGTGAAAATCATCTAACTGATTTACAAGTGTGCACATGGCCGAAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTTGTACTCAGGGTCAACATAGGAATCAGGGAGGACAAACAGAACACCAGGAAGCCCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAAAGTATCTCTCGCANGAGACGTTGTAGATCTTCTTCTTCGGCCTCCTCCTCAATTCCGAGGGACCTTGGGNGAGGGTCTTGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGNG-CCTCCCCGGNTGGGCTTGTNCATCACGATGAGCCAGTGCTCGTANTCGGAACCGGGGAANAGCGGGGGCAANTCCGTCGGCGCGCGGCGGGAGAGGAGCCTCCGCGCGGCGGCGGCGGCGGCGGCGGCCATCGCGGGGTAAAACCCTAGCGGAGTGAAGGGAGAAGG]
[-] EMBL AU174299 [TTTTTTTTTTAGCTCGCTGTGAAAATCATCTAACTGATTTACAAGTGTGCACATGGCCGAAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTT ]
[-] EMBL AU030560 [ ttttttTGGCCGAAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTTGTACTCAGGGTCAACATAGGAATCAGGGAGGACAAACAGAACACCAGGAAGCCCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAAAGTATCTCTCGCANGAGACGTTGTAGATCTTCTTCTTCGGCCTCCTCCTCAATTCCGAGGGACCTTGGGNGAGGGTCTTGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGNG CCTCCCCGGNTGGGCTTGTNCATCACGATGAGCCAGTGCTCGTANTCGGAACCGGGGAANAGCGGGGGCAAN ]
[-] EMBL AK103500 [ TTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTACAGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGACAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAGCCACCCAGGCGGCTTTGTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCTCCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGACAGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAGCTCAGCTCCATAGTCCTTGTACTCAGGGTCGACATAGGAATCAGGGAGGACAAACAGAACACCAGGAAG CCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAAAGTATCTCTCGCAGGAGACGTTGTAGATCTTCTTCTTC GCCTCCTCCTCACTTCCGA GGACCTT GGCGAGGGTC TGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGCGCCCTCCCCGCCT GGCTTGTCCATCACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAACAGCGGGGCCATCTCCGTCGGCGCGCGGCGGGAGAGGAGCCTCCGCGCGGCGGCGGCGGCGGCGGCGGCCATCGCGGGGTAAAACCCTAGCGGAGTGAAGGGAGAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12476#0 TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCT 60
consensus_12476#1 -TTTTTTTTTTAGCTCGCTGTGAAAATCATCTAACTGATTTACAAGTGTGCACATGGCCG 59
* ******** * * * * * * * *** * * ** *
consensus_12476#0 TCAAATTCATATGCCATAGTTCAAT--AGATTAG------TCGA---TTGAAGTAG--AC 107
consensus_12476#1 AAGAGTTCAGCAGCAGCAATGCATTCCAAGCCAGGTACTTTCAAGTTTTCCAGTAATTAC 119
* **** ** * * ** * * ** ** * ** **** **
consensus_12476#0 AAAAC---ATACATGCCCAGATGCATAAAACATTACCAGATTACACAGCAGCAGCAT--A 162
consensus_12476#1 AGAATGCGATACATCCAAAGATGTGAGAATCACCAGCATGAAAAATAGCAATACCAGCGA 179
* ** ****** * ***** ** ** * ** * * **** * ** *
consensus_12476#0 CAAAAAATCTAAGGCATTTCTCGTGCAGGAGCTGCTGTTCTAAACGCAGGAG---TCGAT 219
consensus_12476#1 CAAAACTATTAAAGCAATTTTTAGATTGTTCCATTCAGCATATGCTAGTAAGGCCTCAAG 239
***** *** *** ** * * * ** * ** ** *
consensus_12476#0 GCATCTAGCCAGTTGCAGGTAAGGTGAGCCTTCACCGCTGGTACGCC--TGATTCTCCCT 277
consensus_12476#1 CCACCCAGGCGGCTTT--GTTATTTGGCTTCTGATAATCAGATCACCGTTGGTTCTCCCT 297
** * ** * * * ** * ** * * * * ** ** ********
consensus_12476#0 CCGCTTCACATAGCGAGTTCGGTCACTGTACCGGGGTCTATCTTGTGCTCTCTGAGGAAC 337
consensus_12476#1 CCTCCGGGCGTATCGGGTCCTGTCATTGTACCTAGGCCTATCTGATGCTCTTTGTGGGAC 357
** * * ** ** ** * **** ****** ** ****** ****** ** ** **
consensus_12476#0 TGGCTCCACCCTTCTCTGCCTTTCTGGTGATCTTTGAACAATTTCTCCGTTTACAAACAA 397
consensus_12476#1 AGGTTCTACCCGCCTCTGCCTCTCCGGGGACCTCTGAACAATCTCTCCATTGACGAAGAG 417
** ** **** ******** ** ** ** ** ******** ***** ** ** ** *
consensus_12476#0 CTCAGCGCCATAGTCCTTGTTCTCGGCATCAACATAGGAATCAGGAAGCACAAATAGAAC 457
consensus_12476#1 CTCAGCTCCATAGTCCTTGTACTCAGGGTCAACATAGGAATCAGGGAGGACAAACAGAAC 477
****** ************* *** * ***************** ** ***** *****
consensus_12476#0 ACCTGGTAGCCC-TTCCAGCTTGTTGGATGTTTCCTCGTCAATCTCGCAACCGAACCCAA 516
consensus_12476#1 ACCAGGAAGCCCCTTCCAGCTTGTTGGACGTCTCCTCATCGATCTCGCACCCGAAACCAA 537
*** ** ***** *************** ** ***** ** ******** ***** ****
consensus_12476#0 AGTACCGTTCGCATGACACGTTGTATATCTTCTTCTTCG-CCTCCTCCTCACTTCCCACG 575
consensus_12476#1 AGTATCTCTCGCANGAGACGTTGTAGATCTTCTTCTTCGGCCTCCTCCTCAATTCCGAGG 597
**** * ***** ** ******** ************* *********** **** * *
consensus_12476#0 -ACCTTGG-CGAGGGTCT-GGATGTAGCAGTCGATCATCTGCTGCTTGGTGGCGCCCTCG 632
consensus_12476#1 GACCTTGGGNGAGGGTCTTGGATGTAGCAGTCAATCATCTGCTGCTTGGTGGNGCCTCCC 657
******* ******** ************* ******************* *** *
consensus_12476#0 CCGCCGGGCTTGTCCATGACGATGAGCCAGTGCTCGTAGTCGCACCCGGGGAAGAGCGGC 692
consensus_12476#1 CGGNTGGGCTTGTNCATCACGATGAGCCAGTGCTCGTANTCGGAACCGGGGAANAGCGGG 717
* * ******** *** ******************** *** * ******** *****
consensus_12476#0 GCCATCTCCGTGGGCGCGCGGTCCCCTCCCTGCCCCGACCGCAGCGGCGAGTACGACGAC 752
consensus_12476#1 GGCAANTCCGTCGGCGCGCGGCGGGAGAGGAGCCTCCGC-GCGGCGGCGG---CGGCGGC 773
* ** ***** ********* *** * * ** ****** ** ** *
consensus_12476#0 TCCGGCCGCCGCGCCATGCAGCGGACGGACCCGGCAGCGCGGCGGTGGCCATGGCTGCCG 812
consensus_12476#1 GGCGGCCATCGCGGGGTAAAAC-------CCTAGCGGAGTGAAGGGAG--AAGG------ 818
***** **** * * * ** ** * * * ** * * **
consensus_12476#0 GCGAAGAGAAGGGGAAGGGAGGAGGC 838
consensus_12476#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||