These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1046 fasta sequence [CTGCGATANGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG-TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGT-GGAGATGATAGAGCATTA-CCCAGAAGAAGAAAAGCC-TTGCCAAA-TGGAAGTGA-CCCAGAGAATGAGGAATCTCGATCAAGCAAAATGGCCGTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAATTAACCCGG] [+] EMBL OSS1118A [CTGCGATANGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGNTCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTTCAAAGTTGGTGCA ] [+] EMBL AF464904 [ cGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGT GGAGATGATAGAGCATTA CCCAGAAGAAGAAAAGCC TTGCCAAA TGGAAGTGA CCCAGAGAATGAGGAATCTCGATCAAGCAAAATGGCCGTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGAaaaaaaa ] [+] EMBL AK072844 [ AGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGT GGAGATGATAGAGCATTA CCCAGAAGAAGAAAAGCC TTGCCAAA TGGAAGTGA CCCAGAGAATGAGGAATCTCGATCAAGCAAAATGGCCGTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGGAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAATTAACCCGG] [+] EMBL AU030557 [ GGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGTGGGAGATGATAGAGCATTACCCCAGAAGAAGAAAAGCCTTTGCCAAATTGGAAGTGACCCCAGAAGATGANGGATCTCcggatnca ] [+] EMBL AU030558 [ gATGAGGAATCTCGATCAAGCAAAATGCCCTTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGTTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCA GGCGAAGCNTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGT GAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAAaaaa ] consensusID : consensus_12477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 496 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGG-CCTA-TG-CCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC-TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTG--TTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAA-GTGTTTTGTCAGAATTAACCCGGTATTGAAGCAGTGATATTCTGTTATAAAAAA] [+] EMBL AU183748 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGG CCTA TG CCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTG TTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAA GTGTTTTGTCAGAATTAACCCGGTATTGAAGCAGTGATATTCTGTTATAAAAAA] [+] EMBL C74285 [ AGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGG CCTA TG CCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTG ] [+] EMBL AU161597 [ TTGGCCCTATTGCCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTG TTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAA GTGTTTTGTCAGAATTAAaaa ] [-] EMBL CA761507 [ aGAGGCCGA GACAAGGGGGATTAGCCAGGGCCATTTTTTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTTTCCAATAATTGCTTGCTAGTTGCCTCCCATTGTTGCCATGATTGACTACTGAAGGTGTTTT ] consensusID : consensus_12477#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CTTTTTGTTGTGACAGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAGTGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGTGGAGATGATAGAGCATTACCCAGAAGANGAAAAGCCTTGCCAAATGGAAGTGACCCAGGGAATGAGGATCTCGATCAAGCAAAATGNCCTAAGAGGTGCAAATATCAGTCCCAGGGACGTTGGAGAGGTCGAGTAGAGGCGAGGCGNCCACCACCAGCGGAGGAAGTT] [-] EMBL C99636 [CTTTTTGTTGTGACAGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAGTGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGTGGAGATGATAGAGCATTACCCAGAAGANGAAAAGCCTTGCCAAATGGAAGTGACCCAGGGAATGAGGATCTCGATCAAGCAAAATGNCCTAAGAGGTGCAAATATCAGTCCCAGGGACGTTGGAGAGGTCGAGTAGAGGCGAGGCGNCCACCACCAGCGGAGGAAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12477#0 CTGCGATANGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGA 60 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 AGAAGCTGGGCACCCGCTTCCCCGCGGCA-CGGATCAAAAAGATCATGCAGGCTGATGAG 119 consensus_12477#2 ----------CTTTTTGTTGTGACAGGCA-CGGATCAAAAAGATCATGCAGGCTGATGAG 49 consensus_12477#1 ------CCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGAGAGCGTACCTCCAAGCACA 54 * * ** * * ** *** * * * * consensus_12477#0 GACGTT--GGCAAGATT-------GCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTT 170 consensus_12477#2 GACGTT--GGCAAGATT-------GCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTT 100 consensus_12477#1 CACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAA 114 ** * *** * *** ** **** * * * * * ** consensus_12477#0 GAATTGTTTTTGCAAGAT--TTAATTGACCGAACTTACG--AAATTACACTGCAAAG--T 224 consensus_12477#2 GAATTGTTTTTGCAAGAT--TTAATTGACCGAACTTACG--AAATTACACTGCAAAG--T 154 consensus_12477#1 GAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATC 174 *** * * ** * * * * ** * * ** * ** *** consensus_12477#0 GGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTT 284 consensus_12477#2 GGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTT 214 consensus_12477#1 GGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTAC 234 **** *** ** ** ** * * ** * * * consensus_12477#0 GACTTC-----CTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCAT 339 consensus_12477#2 GACTTC-----CTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCAT 269 consensus_12477#1 GACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGC-AGTTCTC 293 *** * ** * ** ** * * * * ** ** consensus_12477#0 GTGGAGATGATAGAGCATTACCCAGAAGAAGAAAAGCCTTGCCAAATGGAAGTGACCCAG 399 consensus_12477#2 GTGGAGATGATAGAGCATTACCCAGAAGANGAAAAGCCTTGCCAAATGGAAGTGACCCAG 329 consensus_12477#1 CTGGTGTTG-TAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAA 352 *** * ** ** * * * * ** * * ** * ** *** * consensus_12477#0 AGAATGAGGAATCTCGATCAAGCAAAATGGCCG------TAAGAAGTGCAAA-TATCAGT 452 consensus_12477#2 GGAATGAGGA-TCTCGATCAAGCAAAATGNCC-------TAAGAGGTGCAAA-TATCAGT 380 consensus_12477#1 TGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGC 412 * * * * * * * ** * * ** * *** ** * consensus_12477#0 CCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGG-AA 511 consensus_12477#2 CCCAG-GGACGTTGGAGAGGTCGAG-TAGAGG-CGAGG-CGNCCACC-ACCA-GCGG-A- 432 consensus_12477#1 CTCAC--ATTGTTGACATGATTGAC-TACTGA-AGTGTTTTGTCAGAATTAACCCGGTAT 468 * ** ** * * * ** ** * * * ** * *** * consensus_12477#0 GGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGC 571 consensus_12477#2 GGAAGTT----------------------------------------------------- 439 consensus_12477#1 TGAAGCAGTGATATTCTGTTATAAAAAA-------------------------------- 496 **** consensus_12477#0 CTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAG 631 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 CACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGT 691 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 GGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAA 751 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 CATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGA 811 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 CTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTT 871 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 CTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGT 931 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 AATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTT 991 consensus_12477#2 ------------------------------------------------------------ consensus_12477#1 ------------------------------------------------------------ consensus_12477#0 GCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAATTAACCCGG 1046 consensus_12477#2 ------------------------------------------------------- consensus_12477#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||