Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12479 cluster # 12479       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12479#0 length = 1297 sequences # 7  
consensus_12479#1 length = 538 sequences # 1  
consensus_12479#2 length = 486 sequences # 1  
consensus_12479#3 length = 439 sequences # 1  

consensusID : consensus_12479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1297
fasta sequence
                              [GACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGT-CATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTC-TGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCACATATACTACGTCTTCTCTCGGAATGGTGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCATGATATTTTCTAATATTATGAATTAAAAAGTATTTGTTATAAACAATTGACTACCATATCCATTATCTAAAAAAGTGACTACCTTATTAAAATAAGCAACCAAGTAATACTAACATACTAGATTAAAAAAATATTTTATCTATGACATATCATAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTTGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGCGACGGTGGGAGTGGGACGATGGTGAGATGTAAAAGCCAGATTCCAAGCTCCTTGTGGAAAAAGGTGGGGGGCACGCGTTTTGACCCATTGTCCGACCCGTTGGGTCTGCCCCCCTGTGGAGTGCTTATGTCCCCCCGATGTATTTTGAGTTACTCCTCCAGATAGAGGTCGTTTACTTGCGCGGTGAGACTTTTGTCTTCGCCGTTCATAGCATCGCAGTTAGGTTAG]

[+] EMBL AK066089             [GACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGT CATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCGGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTC TGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSR08322A            [           GCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGT CATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB643608             [             TAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGT CATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTC TGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCACATATACTACGTCTTCTCTCGGAATGGTGGAATCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C26726               [             TAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCNGCAGCNG CGGNTCCATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGAAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACACCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC21661             [                                                                                                                                                                                                 CGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGA GNGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTTGGGGCATGACGTCGACGGTGGCGGTCG CGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU093469             [                                                                                                                                                                                                                                              CCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTC TGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCACATATACTACGTCTTCTCTCGGAATGGTGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCATGATATTTTCTAATATTATGAATTAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB643609             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TATACTACGTCTTCTCTCGGAATGGTGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCATGATATTTTCTAATATTATGAATTGTCCAGTATTTGTTATAAACAATTGACTACCATATCCATTATCTAAAAAAGTGACTACCTTATTAAAATAAGCAACCAAGTAATACTAACATACTAGATTAAAAAAATATTTTATCTATGACATATCATAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTTGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGCGACGGTGGGAGTGGGACGATGGTGAGATGTAAAAGCCAGATTCCAAGCTCCTTGTGGAAAAAGGTGGGGGGCACGCGTTTTGACCCATTGTCCGACCCGTTGGGTCTGCCCCCCTGTGGAGTGCTTATGTCCCCCCGATGTATTTTGAGTTACTCCTCCAGATAGAGGTCGTTTACTTGCGCGGTGAGACTTTTGTCTTCGCCGTTCATAGCATCGCAGTTAGGTTAG]


>consensus_12479#0 GACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCT CGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGG AGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGTCATTCAGGCAATCACGATGCTCGTGG CGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCT TCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGC GCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCG TGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCG CGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGA CGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTT CCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGA TGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAA TTTGATAGCAATAATAAGTGAATTCCCCATTCACATATACTACGTCTTCTCTCGGAATGG TGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCATGATATTTTCTAATATTATGA ATTAAAAAGTATTTGTTATAAACAATTGACTACCATATCCATTATCTAAAAAAGTGACTA CCTTATTAAAATAAGCAACCAAGTAATACTAACATACTAGATTAAAAAAATATTTTATCT ATGACATATCATAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTTGTTT TACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCAT TACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGCGACGGTGGGAG TGGGACGATGGTGAGATGTAAAAGCCAGATTCCAAGCTCCTTGTGGAAAAAGGTGGGGGG CACGCGTTTTGACCCATTGTCCGACCCGTTGGGTCTGCCCCCCTGTGGAGTGCTTATGTC CCCCCGATGTATTTTGAGTTACTCCTCCAGATAGAGGTCGTTTACTTGCGCGGTGAGACT TTTGTCTTCGCCGTTCATAGCATCGCAGTTAGGTTAG



consensusID : consensus_12479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence
                              [TAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTGGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGTGCCGGTGGGAGTGGGTCGATGGTGAGATGTAAAAGCCAGATTGGAAGCTCCTTGAGGAAAAAGGTGGCGACGACGCCTATTGAGCCATTGTCCGAGCCGTTGGCTCTGCCGCCCCGTGGAGTACTTCTGTCCCACAGATGTCTTTTGAGATACTCCTCCAGTTAGATGACGTTTAGTTACGAGACGAGACTTTCGTCTTCCCCGTGCATAGCATCGCAGTTAGGTTAGGCTTGCTTCCTTGTCCGATTGGCAAGGGTCATAGGAGGTGGCAGCGACGAGTCTCTCCATCAGTGGCGGAGGTTGACGCTAGATTTTGTGGCTATGGCAGGTGAATTGTAACATCCTGAAAATTCCTGACAAGAAAAAATCACCAAAATTTC]

[-] EMBL CB643647             [TAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTGGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGTGCCGGTGGGAGTGGGTCGATGGTGAGATGTAAAAGCCAGATTGGAAGCTCCTTGAGGAAAAAGGTGGCGACGACGCCTATTGAGCCATTGTCCGAGCCGTTGGCTCTGCCGCCCCGTGGAGTACTTCTGTCCCACAGATGTCTTTTGAGATACTCCTCCAGTTAGATGACGTTTAGTTACGAGACGAGACTTTCGTCTTCCCCGTGCATAGCATCGCAGTTAGGTTAGGCTTGCTTCCTTGTCCGATTGGCAAGGGTCATAGGAGGTGGCAGCGACGAGTCTCTCCATCAGTGGCGGAGGTTGACGCTAGATTTTGTGGCTATGGCAGGTGAATTGTAACATCCTGAAAATTCCTGACAAGAAAAAATCACCAAAATTTC]


>consensus_12479#1 TAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTGGTTTTACAACAATTT GTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTGTCA TGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGTGCCGGTGGGAGTGGGTCGATGG TGAGATGTAAAAGCCAGATTGGAAGCTCCTTGAGGAAAAAGGTGGCGACGACGCCTATTG AGCCATTGTCCGAGCCGTTGGCTCTGCCGCCCCGTGGAGTACTTCTGTCCCACAGATGTC TTTTGAGATACTCCTCCAGTTAGATGACGTTTAGTTACGAGACGAGACTTTCGTCTTCCC CGTGCATAGCATCGCAGTTAGGTTAGGCTTGCTTCCTTGTCCGATTGGCAAGGGTCATAG GAGGTGGCAGCGACGAGTCTCTCCATCAGTGGCGGAGGTTGACGCTAGATTTTGTGGCTA TGGCAGGTGAATTGTAACATCCTGAAAATTCCTGACAAGAAAAAATCACCAAAATTTC



consensusID : consensus_12479#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [GCGCCTGCCGCCGCTGGAACAGGAGGAGGACGGCGACGACGACAGTGCGGCGGTGAGGCGGCGGCGGCGGTCGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGTTGAGCGCCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAAGGCCGCCGTCTGGGGGATGACGTCGACGGTGGCGGTCGCCGGATTCTACCTCCTGTTCGTCCACAGGCCTGCCGCCATTTCGTCCTATTCCGAGCTGGATACTTGCAAGCACGAGCAGGCGTCGTCCAAGCTCGATCAGATCCTATAACAAAAGATTTGGGGAAGAGGAGCTTAATGTTTAATCTTGTAGTATTCAATGGAAATTTAGGCTGTGTTCTTTCCTAGGTGATCTGGGTGATTGTCACTGAGTTTTATTTCGTTTTCCGCGTACACCCTTCCCAAACTACTAAACGGTGTGTTTTTTGAAAAAAAATTATATAGGAA]

[+] EMBL AK062607             [GCGCCTGCCGCCGCTGGAACAGGAGGAGGACGGCGACGACGACAGTGCGGCGGTGAGGCGGCGGCGGCGGTCGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGTTGAGCGCCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAAGGCCGCCGTCTGGGGGATGACGTCGACGGTGGCGGTCGCCGGATTCTACCTCCTGTTCGTCCACAGGCCTGCCGCCATTTCGTCCTATTCCGAGCTGGATACTTGCAAGCACGAGCAGGCGTCGTCCAAGCTCGATCAGATCCTATAACAAAAGATTTGGGGAAGAGGAGCTTAATGTTTAATCTTGTAGTATTCAATGGAAATTTAGGCTGTGTTCTTTCCTAGGTGATCTGGGTGATTGTCACTGAGTTTTATTTCGTTTTCCGCGTACACCCTTCCCAAACTACTAAACGGTGTGTTTTTTGAAAAAAAATTATATAGGAA]


>consensus_12479#2 GCGCCTGCCGCCGCTGGAACAGGAGGAGGACGGCGACGACGACAGTGCGGCGGTGAGGCG GCGGCGGCGGTCGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGTTGAGCGCCGCCTT CGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAAGGCCGCCGTCTGGGGGAT GACGTCGACGGTGGCGGTCGCCGGATTCTACCTCCTGTTCGTCCACAGGCCTGCCGCCAT TTCGTCCTATTCCGAGCTGGATACTTGCAAGCACGAGCAGGCGTCGTCCAAGCTCGATCA GATCCTATAACAAAAGATTTGGGGAAGAGGAGCTTAATGTTTAATCTTGTAGTATTCAAT GGAAATTTAGGCTGTGTTCTTTCCTAGGTGATCTGGGTGATTGTCACTGAGTTTTATTTC GTTTTCCGCGTACACCCTTCCCAAACTACTAAACGGTGTGTTTTTTGAAAAAAAATTATA TAGGAA



consensusID : consensus_12479#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [CTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCACATATNCTAAAAAAAAAAAA]

[+] EMBL AU166495             [CTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCACATATNCTAAAAAAAAAAAA]


>consensus_12479#3 CTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGG GGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCT GTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGC GATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACT GTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAA GCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTA ATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCAC ATATNCTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      GACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCT 60
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      CGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGG 120
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      AGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGTCATTCAGGCAATCACGATGCTCGTGG 180
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      CGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCT 240
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ----------------------------------------------------------GC 2
consensus_12479#3      ----------------------------------CTTCCTGTGCCTCTCGATGTACGAGC 26
consensus_12479#0      TCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGC 300
consensus_12479#1      --------------------------TAATATAGTTTCTTTTACTCATAGCAAAGCATGT 34
                                                                                 * 

consensus_12479#2      GCCTGCCGCC---GCTGGAA------CAGGAGGAGGACGGCGACGA--CGACAGTGCGGC 51
consensus_12479#3      GCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGA--CGACGGTGCGGC 84
consensus_12479#0      GCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGA--CGACGGTGCGGC 358
consensus_12479#1      GCATTTCGCTGGTTTTACAACAA-TTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCC 93
                       ** *  ***      *  **          *   * ** *     *  ***        *

consensus_12479#2      GGTGAGGCGGCGGCGGCGGTCGC-TCAAGATGGCCGTGTGGGCGCTGTCGACGGCGTTGA 110
consensus_12479#3      CGTGAGGCGGCGGC----------TCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGA 134
consensus_12479#0      CGTGAGGCGGCGGC----------TCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGA 408
consensus_12479#1      TGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTG-ACGCGCT-TTGACCAGGCTAG 151
                        ** *       **          *** * **    **   ***** * ***   * *  

consensus_12479#2      GCGCCGCCTTCGCGTGGCGCGTGGCGGCGGTCA--TGCCGGCGCCGGCGATGAAGGCCGC 168
consensus_12479#3      GCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCA--TGCCGGCGCCGGCGATGAGGGCCGC 192
consensus_12479#0      GCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCA--TGCCGGCGCCGGCGATGAGGGCCGC 466
consensus_12479#1      GTGAGGTGCCGGTG-GGAGTGGGTCGATGGTGAGATGTAAAAGCCAG-ATTGGAAGCT-C 208
                       * *  *     * * ** * * * **  *** *  **     *** *   **   **  *

consensus_12479#2      CGTCTGGGGGATGACGTCGACGGTGGCGGTCGCCGGATTCTACCTCCTGTTCG-TCCACA 227
consensus_12479#3      CGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCG-TCTACA 251
consensus_12479#0      CGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCG-TCTACA 525
consensus_12479#1      CTTGAGGAAAAAGGTGGCGACGACGCCTATTGAGCCATTGTCCGAGCCGTTGGCTCTGCC 268
                       * *  **   * *  * *****  * *  * *     ** * *   * *** * **  * 

consensus_12479#2      GGCCTGCCGCCATTTCGTCCTATTCCGAGCTGGATACTTGCAAGCACGAGCAGGCGTCGT 287
consensus_12479#3      GGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGC 311
consensus_12479#0      GGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGC 585
consensus_12479#1      GCCCCGTGG--AGTACTTCTGTCCCACAGATGTCTTTTGAGATACTCCTCCAGTTA--GA 324
                       * ** *     * * * **     *  *  **  *      *  * *   ***     * 

consensus_12479#2      CCAAGCTCGATCAGATCCTATAACAAAAGATTTGGGGAAGAGGAGCTTAATGTTTAATCT 347
consensus_12479#3      CCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCT 371
consensus_12479#0      CCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCT 645
consensus_12479#1      TGACGTTTAGTTACGAGACGAGACTTTCGTCTTCCCCGTGCATAGCATCGCAGTTAGGTT 384
                         * * *     *         **        *      *   *** *     ***   *

consensus_12479#2      TGTAGTA-TTCAATGGAAATTTAGGCTGTGTTCTTTCCTAGGTGATCTGGGTGATTGT-- 404
consensus_12479#3      TGTAAT----CAATATAAATTT-GATAGCAATAATAAGTGAATTCCCCATTCACATAT-- 424
consensus_12479#0      TGTAAT----CAATATAAATTT-GATAGCAATAATAAGTGAATTCCCCATTCACATATAC 700
consensus_12479#1      AGGCTTGCTTCCTTGTCCGATT-GGCAAGGGTCATAGG-AGGTGGCAGCGACGAGTCTCT 442
                        *   *    *  *      ** *       *  *       *            * *  

consensus_12479#2      ----------CACTGAGTTTTATTTCGTTTTCCGCGTACACCCTTCCCAAACTACTAAAC 454
consensus_12479#3      ----------NCTAAAAAAAAAAAA----------------------------------- 439
consensus_12479#0      TACGTCTTCTCTCGGAATGGTGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCAT 760
consensus_12479#1      CCATCAGTGGCGGAGGTTGACGCTAGATTTTGTGGCTATGGCAGGTGAATTGTAACATCC 502
                                                                                   

consensus_12479#2      GGTGTGTTTTTTGAAAAAAAATTATATAGGAA---------------------------- 486
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      GATATTTTCTAATATTATGAATTAAAAAGTATTTGTTATAAACAATTGACTACCATATCC 820
consensus_12479#1      TGAAAATTCCTGACAAGAAAAAATCACCAAAATTTC------------------------ 538
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      ATTATCTAAAAAAGTGACTACCTTATTAAAATAAGCAACCAAGTAATACTAACATACTAG 880
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      ATTAAAAAAATATTTTATCTATGACATATCATAATATAGTTTCTTTTACTCATAGCAAAG 940
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      CATGTGCATTTCGCTTGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAA 1000
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      GTCCTGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCT 1060
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      AGGTGAGGCGACGGTGGGAGTGGGACGATGGTGAGATGTAAAAGCCAGATTCCAAGCTCC 1120
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      TTGTGGAAAAAGGTGGGGGGCACGCGTTTTGACCCATTGTCCGACCCGTTGGGTCTGCCC 1180
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ------------------------------------------------------------
consensus_12479#3      ------------------------------------------------------------
consensus_12479#0      CCCTGTGGAGTGCTTATGTCCCCCCGATGTATTTTGAGTTACTCCTCCAGATAGAGGTCG 1240
consensus_12479#1      ------------------------------------------------------------
                                                                                   

consensus_12479#2      ---------------------------------------------------------
consensus_12479#3      ---------------------------------------------------------
consensus_12479#0      TTTACTTGCGCGGTGAGACTTTTGTCTTCGCCGTTCATAGCATCGCAGTTAGGTTAG 1297
consensus_12479#1      ---------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)