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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1996 fasta sequence
[CTCTTCTTCTTTGTCAACGCTACTAAGGACCTGACGGTTCGCCTACTGGATGAATGAAAGAACATGAGAAAGGGTTATAAAACATACAAACTTTTGTTTGTGACCAAATGATCTTCTTATGCAGCTTATTCAATATCTTCATCTGAAAAAGTGGCTGCAGGATGAGAGGGTCATGAAAACAACATCGGCGTCAAAGCTTGGCAAGTTAATGCACCATCGTTTCCTAGAAAGTATTTCATTGAATAAGGCTTGAGTTGTATTATATGGTGCTAATAATAATTTGGAACTTTCACATCAATGAAGTCCAGCTTTTGAACTGATCAAAAGGGCTTTGCACATGAACAGAGGGCTCCTTGATTGCTAACTTGGAGATATCTAATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTGCACGTTCCATTACAACCATAAAGCTTCAAAAAACAGAGGAACTCCAGCACTGAGCAATAGATACATCGTGGGGATATCATATACTACATAAGTACGTCTTAAATCACAGGTATGTGCAAACAGAAGAAAACTGATCACTCCAGTACCAGAAGGTGGCTTACACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTATGGAGGCATTTTCACATGACAATGTGGAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATTTCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGTCAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACCCCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAGCTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAGAACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATACACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTTGTTCTCCTCAGGCCTCATATGCTCGGTTGTGGAGTCACCGATAGCTCTTTGCGGTATAAATACGTTCACTAATCGATTTGTACTCAATTTACATATTCATATGTTTTATACAATGGTAGTTTGTACTCAATTCACATATTCATATGCTTATACAATGGTAGGCTA]
[+] EMBL AK110946 [CTCTTCTTCTTTGTCAACGCTACTAAGGACCTGACGGTTCGCCTACTGGATGAATGAAAGAACATGAGAAAGGGTTATAAAACATACAAACTTTTGTTTGTGACCAAATGATCTTCTTATGCAGCTTATTCAATATCTTCATCTGAAAAAGTGGCTGCAGGATGAGAGGGTCATGAAAACAACATCGGCGTCAAAGCTTGGCAAGTTAATGCACCATCGTTTCCTAGAAAGTATTTCATTGAATAAGGCTTGAGTTGTATTATATGGTGCTAATAATAATTTGGAACTTTCACATCAATGAAGTCCAGCTTTTGAACTGATCAAAAGGGCTTTGCACATGAACAGAGGGCTCCTTGATTGCTAACTTGGAGATATCTAATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTGCACGTTCCATTACAACCATAAAGCTTCAAAAAACAGAGGAACTCCAGCACTGAGCAATAGATACATCGTGGGGATATCATATACTACATAAGTACGTCTTAAATCACAGGTATGTGCAAACAGAAGAAAACTGATCACTCCAGTACCAGAAGGTGGCTTACACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTATGGAGGCATTTTCACATGACAATGTGGAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATTTCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGTCAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACCCCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAGCTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAGAACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATACACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTTGTTCTCCTCAGGCCTCATATGCTCGGTTGTGGAGTCACCGATAGCTCTTTGCGGTATAAATACGTTCACTAATCGATTTGTACTCAATTTACATATTCATATGTTTTATACAATGGTAGTTTGTACTCAATTCACATATTCATATGCTTATACAATGGTAGGCTA]
[+] EMBL C27980 [ CAATACCCTATGGAGGCATTTTCACATGACAATGTGGAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATTTCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGTCAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTG ]
[+] EMBL AU093289 [ CTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACCCCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAGCTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAGAACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATACACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTTGGCGGCGTCGAAGAGG CGACGACGTncg ]
consensusID : consensus_12494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1354 fasta sequence
[ACGTGTACGCGTTTCAGCGGAAGCCTGGAAAGATGCTTCGAGAAGAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTCGCATACATTGGATGGATGGCACATTGACGAAGCGGA]
[-] EMBL AK071970 [ACGTGTACGCGTTTCAGCGGAAGCCTGGAAAGATGCTTCGAGAAGAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTCGCATACATTGGATGGATGGCACATTGACGAAGCGGA]
[+] EMBL CB682417 [ TATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAAACGTGATTCACAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAAATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGGGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAAATTCTTCTGTAAAACTTGGGGAATTTGTATTTTCGGGGCTATGGTATCACCGATGACTTCTCATCCAAAACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACAACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAAATCCGGGATGGGAGTTGTGAAAATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCAATCCAATTTGCACTTTTCACCAAAACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATG ]
consensusID : consensus_12494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1315 fasta sequence
[GAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT]
[-] EMBL AK065577 [GAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAG ]
[-] EMBL CB682416 [ GCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT]
consensusID : consensus_12494#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTCAAGGCCATGTTTTCCCCCCTTGCAAAGCTTTCATTTGGAACCAAGGTTTCAAAAACATTTCAGGTAAAGAGCAACAGTACTTGAAGTACATACATATAAAGTTGGCCGATGTTCTGATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAGAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAGACTTTTAACTCATATGTCGTCGTCCAAAATTTTCAGATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGTGTCGACTTGCCCACACGCGCTGCTGCAGAAGGATTGATAGCTCGCCGGAGAAAGACGACGGAGCCCCTCCCCATGGAACAGCTGCAGCTGGCGATGGCCGGAGAGGCGGCAGATCGCCTGAATTCTCCCGAGGACCAACTCCGATGCCATGTTTGCCCAAGCAAGC]
[+] EMBL CA759176 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTCAAGGCCATGTTTTCCCCCCTTGCAAAGCTTTCATTTGGAACCAAGGTTTCAAAAACATTTCAGGTAAAGAGCAACAGTACTTGAAGTACATACATATAAAGTTGGCCAATGTTCTAATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAAAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCAGGTATTCCTGTTTAAAAAACTTTTAACTCAAATGTCGTCGCCCAAAATTTTCAAATCTTTTGGAAGCTTCTCACGCTTTATGCGTGCAAGGCTCTAAGGATTTCTGATTGCATCCAGCATCCTGTCCAAAAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGGGACGACTTGCCCACACCCGCTGTTGCAAAAGGATTGATAGCTCGCCGGAAAAAGACAACGGACCCCCTCCCCATGGAACAGCTNCATCTGGCGATGGCCGGAAAGGCGGCAAATCGCCTGAATTCTCCCGAGGACCAACTCCNATGCCATGTTTGCCCAAGCAAGC]
[-] EMBL AK120661 [ TTTCATAAACATTTCATGTAAAGAGCAACAGTACTTGAAGTACATACATATGAAGTTGGCCGATGTTCTGATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAGAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAGACTTTTAACTCATATGTCGTCGTCCAAAATTTTCAGATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGTGTCGACTTGCCCACACGCGCTGCTGCAGAAGGATTGATAGCTCGCCGGAGAAAGACGACGGAGCCCCTCCCCATGGAACAGCTGCAGCTGGCGATGGCCGGAGAGGCGGCAGATCGCCTGAATTCTCCCGAGGACCAACTCCGATGCCAT ]
[-] EMBL CA767021 [ CCGATGTTCTGATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAGAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAGACTTTTAACTCATATGTCGTCGTCCAAAATTTTCAGATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGTGTCGACTTGCCCACACGCGCTGCTGCAGAAGGATTGATAGCTCGCCGGAGAAAGACGACGGAGCCCCTCCCCATGGAACAGCTGCAGCTGGCGATGGCCGGAGAGGCGGCAGATCGCCTGAATTCTCCCGAGGACCAACTCCGATGCCATGTTTGCCCccccct ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12494#1 ACGTGTACGCGTTTCAGCGGAAGCCTGGAAAGATGCTTCGAGAAGAATATTTTGCCAATT 60
consensus_12494#2 --------------------------------------------GAATATTTTGCCAATT 16
consensus_12494#0 ----CTCTTCTTCTTTGTCAACGCTACTAAGGACCTGACGGTTCGCCTACTGGATGAATG 56
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 GGTCATACATATTACATGGTCGCTGGCCA-----ACTTTCTTTTATGACTCGGCTCAAAC 115
consensus_12494#2 GGTCATACATATTACATGGTCGCTGGCCA-----ACTTTCTTTTATGACTCGGCTCAAAC 71
consensus_12494#0 AAAGA-ACATGAGAAAGGGTTATAAAACATACAAACTTTTGTTTGTGACCAAA--TGATC 113
consensus_12494#3 --------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTCAA---GGCC 43
* *** *** *
consensus_12494#1 TTTTAATCCATGGTCTCTGAAAACTTAATAT--AGACGTGATTCACAAAAAAAAAAA-CA 172
consensus_12494#2 TTTTAATCCATGGTCTCTGAAAACTTAATAT--AGACGTGATTCACAAAAAAAAAAAACA 129
consensus_12494#0 TTCTTATGCAGCTTATTCAATATCTTCATCTGAAAAAGTGGCT-GCAGGATGAGAGGGTC 172
consensus_12494#3 ATGTTTTCCCCCCT-TGCAAAGCTTTCATTTGGAACCAAGGTTTCAAAAACATTTCAGGT 102
* * * * * * * ** ** * * * * * *
consensus_12494#1 GAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTC 232
consensus_12494#2 GAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTC 189
consensus_12494#0 ATGAAAACAACA----TCGGCGTCAAAGCT-----TGGCAAGTTAATGCACCATCGTTTC 223
consensus_12494#3 A-AAGAGCAACAGTACTTGAAGTACATACA-----TATAAAGTTGGCCGATGTTCTGATC 156
* * *** * * * *** * ** **
consensus_12494#1 GTGTGGTGGTTGTCAT-AAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGC 291
consensus_12494#2 GTGTGGTGGTTGTCAT-AAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGC 248
consensus_12494#0 CTAGAAAGTATTTCATTGAATAAGGCTTGAGTTGTATTATATGGTGCTAATAA-TAATTT 282
consensus_12494#3 C-ATAATCTGGATCAT--AACAA---TAGCATCACAAACTCAAGTTAAGAATAGTACAGG 210
**** ** * ** * * **
consensus_12494#1 CACACGATTAACTCACTGGCATTTTTCAGCCTATCTG--CAATAGATTCTTCTGTAAAAC 349
consensus_12494#2 CACACGATTAACTCACTGGCATTTTTCAGCCTATCTG--CAATAGATTCTTCTGTAAAAC 306
consensus_12494#0 GGAACTTTCACATCAATGAAGTCCAGCTTTTGAACTGATCAAAAGGGCTTTGCACATGAA 342
consensus_12494#3 GTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAG 270
** * * * ** * * * *
consensus_12494#1 TTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGC 409
consensus_12494#2 TTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGC 366
consensus_12494#0 CAGAGGGCTCCTTGATT--GCTAACTTGGAGATATC--TAATCTTTTGGAAGCTTCTCAC 398
consensus_12494#3 ACTTTTAACTCATATGT--CGTCGTCCAAAATTTTC--AGATCTTTTGGAAGCTTCTCAC 326
* * * * * * * * *
consensus_12494#1 ACT-TCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTC 468
consensus_12494#2 ACT-TCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTC 425
consensus_12494#0 GCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATT 458
consensus_12494#3 GCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATT 386
** * *** *** ** * ** * **** * ** * * * ** *** * *
consensus_12494#1 CACGACACCGGCAATTTTCTCCA--AGCTT-----TCTGCTACCTTACCAA--------- 512
consensus_12494#2 CACGACACCGGCAATTTTCTCCA--AGCTT-----TCTGCTACCTTACCAA--------- 469
consensus_12494#0 CAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACT 518
consensus_12494#3 CAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGC------ 440
** ** *** ** *** * * * * **** * * ** * *
consensus_12494#1 GATCCGGGATGGGA-GTTGTGAAGATAA--CATCAAGTACATGATGGCCCTCCTTGGTAA 569
consensus_12494#2 GATCCGGGATGGGA-GTTGTGAAGATAA--CATCAAGTACATGATGGCCCTCCTTGGTAA 526
consensus_12494#0 GATCCTGCACGTTCCATTACAACCATAAAGCTTCAAAAAACAGAGGAACTCCAGCACTGA 578
consensus_12494#3 GATACTGATCCTTG-------ATCGTCG--TGTCGACTTGCCCACACGCGCTGCTGCAGA 491
*** * * * * ** * * * *
consensus_12494#1 CCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCT 629
consensus_12494#2 CCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCT 586
consensus_12494#0 GCAATAGA----TACATCGTG--GGGATATCATATACTACATAAGTACGTCTTAAATCAC 632
consensus_12494#3 AGGATTGA----TAGCTCG-----------------CCGGAGAAAGACGACGGAGCCCCT 530
** * * ** * * ** * *
consensus_12494#1 CTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTT 689
consensus_12494#2 CTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTT 646
consensus_12494#0 AGGTATGTGCAAACAGAAGAAAACTGATCACTCCAGTACCAG-AAGGTGGCTTACACTTT 691
consensus_12494#3 CCCCATGGAACAGCTGCAGCTGGC-GATGGCCGGAGAGGCGG-CAGATCGCCTG-AATTC 587
* * * ** * ** * * * **
consensus_12494#1 TCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGA 749
consensus_12494#2 TCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGA 706
consensus_12494#0 TCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGA 751
consensus_12494#3 TCCCGAGGACCAA--------CTCCGATGCC------ATGTTTGCCCAAGCAAGC----- 628
** * * *** ** ******* ** *** * ** *
consensus_12494#1 AGGCAAGTTTATCAGCTGATTTAACAATACCCT--------------------------- 782
consensus_12494#2 AGGCAAGTTTATCAGCTGATTTAACAATACCCT--------------------------- 739
consensus_12494#0 AGGCAAGTTTATCAGCTGATTTAACAATACCCTATGGAGGCATTTTCACATGACAATGTG 811
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ------------------------------------------------------------
consensus_12494#2 ------------------------------------------------------------
consensus_12494#0 GAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATT 871
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 -----------------------TCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTT 819
consensus_12494#2 -----------------------TCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTT 776
consensus_12494#0 TCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTT 931
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 CCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGC 879
consensus_12494#2 CCGACGGCCAATGACAGCGGTCATTGTGTCCT---------------------------- 808
consensus_12494#0 CCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGC 991
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 AAAGTCAAT--------------------------------------------------- 888
consensus_12494#2 ------------------------------------------------------------
consensus_12494#0 AAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGT 1051
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ------------------------------------TTGGGTGCCTTCCTCGTAGCTGCT 912
consensus_12494#2 ------------------------------------TTGGGTGCCTTCCTCGTAGCTGCT 832
consensus_12494#0 CAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCT 1111
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 GACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGAC-------------- 958
consensus_12494#2 GACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGAC-------------- 878
consensus_12494#0 GACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACC 1171
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ------------------------------------------------------------
consensus_12494#2 ------------------------------------------------------------
consensus_12494#0 CCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAG 1231
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ------------------------------------------------------------
consensus_12494#2 ------------------------------------------------------------
consensus_12494#0 CTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAG 1291
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 -------GAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAG 1011
consensus_12494#2 -------GAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAG 931
consensus_12494#0 AACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAG 1351
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 GTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTC 1071
consensus_12494#2 GTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTC 991
consensus_12494#0 GTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTC 1411
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 CACAAACCTGTCCACC-------------------------------------------- 1087
consensus_12494#2 CACAAACCTGTCCACC-------------------------------------------- 1007
consensus_12494#0 CACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATA 1471
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ----------------------------------------------------GTGAGCTT 1095
consensus_12494#2 ----------------------------------------------------GTGAGCTT 1015
consensus_12494#0 CACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTT 1531
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 GGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACG 1155
consensus_12494#2 GGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACG 1075
consensus_12494#0 GGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACG 1591
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 TCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGG 1215
consensus_12494#2 TCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGG 1135
consensus_12494#0 TCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGG 1651
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 GCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGT 1275
consensus_12494#2 GCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGT 1195
consensus_12494#0 GCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGT 1711
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 TGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTCGCATACATTGGATGGAT 1335
consensus_12494#2 TGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGAT 1255
consensus_12494#0 TGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGAT 1771
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 GGCACATTGACGAAGCGGA----------------------------------------- 1354
consensus_12494#2 GGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT 1315
consensus_12494#0 GGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT 1831
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ------------------------------------------------------------
consensus_12494#2 ------------------------------------------------------------
consensus_12494#0 GTTCTCCTCAGGCCTCATATGCTCGGTTGTGGAGTCACCGATAGCTCTTTGCGGTATAAA 1891
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ------------------------------------------------------------
consensus_12494#2 ------------------------------------------------------------
consensus_12494#0 TACGTTCACTAATCGATTTGTACTCAATTTACATATTCATATGTTTTATACAATGGTAGT 1951
consensus_12494#3 ------------------------------------------------------------
consensus_12494#1 ---------------------------------------------
consensus_12494#2 ---------------------------------------------
consensus_12494#0 TTGTACTCAATTCACATATTCATATGCTTATACAATGGTAGGCTA 1996
consensus_12494#3 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||