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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1288 fasta sequence
[CGCCAACCATCACATCTGATCGAGAACAAGAAGAAGAAGAAGAAGAAGCAAGAACAGCAAGAGGAAGAGATGCAAATGGAGTCGTACTACGGCGCGTTCCACGCCGACGAGGCCGCGTTCTTCTTCCCCCACCACGTGCCGGCGTCGCCGGAGCTGCCGTTCGGCCTCATTGCGTCGCCGGAGCCGGAGCCGGAGCCGGAGCAGGCGGCGGCGGAGGCGAGGCAGAGCGCGTTCCAGGAGTACGGCGGCGCGGTGCACGCCGGAGCGCCGGCGGCGGCGGGGGCTGTCACCACCGGTGGGACGAACATCCACCGGAGGGTGATGGACGTGCTGGGCAGGATGGGCGGCGGCGGCGGCGGGGGGGAGAAGGGGGAGGGTGAGGAGATGGAGGAGGAGGAGGAGGTGCCGCAGCGGCGGCGG-CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCGAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGG-CCACGACGAGCAGCAG-CCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG-CATGTCCGGGAACA-GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT-CAAGG-AAGTAGAGAGGAACCAGCCTGACAGCGA-TGCCCCATTTCCTGGAAGC-AAAGGCTGGACACAGACATC-TCATGTG-CAAAATGTGTTTTG-ATCGGTTTTGAAACATGAT-CCTGC-TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA-CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCATATCTCAGTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCACATCCCACATAAACTCAAAAAAAAAAAA]
[+] EMBL AK071734 [CGCCAACCATCACATCTGATCGAGAACAAGAAGAAGAAGAAGAAGAAGCAAGAACAGCAAGAGGAAGAGATGCAAATGGAGTCGTACTACGGCGCGTTCCACGCCGACGAGGCCGCGTTCTTCTTCCCCCACCACGTGCCGGCGTCGCCGGAGCTGCCGTTCGGCCTCATTGCGTCGCCGGAGCCGGAGCCGGAGCCGGAGCAGGCGGCGGCGGAGGCGAGGCAGAGCGCGTTCCAGGAGTACGGCGGCGCGGTGCACGCCGGAGCGCCGGCGGCGGCGGGGGCTGTCACCACCGGTGGGACGAACATCCACCGGAGGGTGATGGACGTGCTGGGCAGGATGGGCGGCGGCGGCGGCGGGGGGGAGAAGGGGGAGGGTGAGGAGATGGAGGAGGAGGAGGAGGTGCCGCAGCGGCGGCGG CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCGAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGG CCACGACGAGCAGCAG CCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGAGCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG CATGTCCGGGAACA GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGAAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAA ]
[+] EMBL AU162759 [ GCGGCGGACGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGA CGCCAGCCGCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCAAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGG CCACGACGAGCAGCAG CCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG CATGTCCGGGAACAGGGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT CAAGGAAAGTAGAGAGGAACCAGCCTGACAGCGATTCCCCCATTTCCTGGAAGCAAAAGGCTTGACACAGACATCTTCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGCTTGGGANCCCCATTTGTTCATTTTTTTAAAAGCTTGTTATTGAGCNAATTGAAAAAAAATTTCCATATCTCCTTGTCAATGTACTTTTTTTTTGTCCATGTAGATACAATCATACAA ]
[+] EMBL AU057590 [ actnaAAGCCCCAGATCATGGGCCCACGACGANCAGCAGCCCGTGCNTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCNCCGCGCTCCGGCGGCTCAAGGNCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG CATGTCCGGGAACA GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TNCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCATATCTCAGTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCACATCCCACATAAACTCAAAAAAAAAAAA]
[+] EMBL AU056829 [ GCGCGGGATCCGGTCGAGCCATGTCCGGGAACA GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCNGTGGAAGAGGCTCTCCAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCAaaaaaaaa ]
[-] EMBL BU673046 [ GGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC CAAGGCTGGACACCGACCTC TCAAGGGCCAAAATGTGTTTGGAATCGGTTTTGAAACATGATCCCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACNAAAAAGATTTAAGCAGCTTGT ]
[+] EMBL BU673864 [ gGGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTG ]
[-] EMBL CB965075 [ GGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTACCAAGGAAAAAAGAAAGAGAAGAGTAC AAAAAGATTTAAGCAGCTTGT ]
[-] EMBL CB966583 [ GAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACA ]
[-] EMBL CB966761 [ GAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CNAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGG AAAAAAATCTCCATATCTCC TGTCAATGTACCTTTTTTTTGTCCATGTAGATAC ATCATAC AATAATAGCTTCCTCTCTTTTCTA C AGG AAAAAG AAGAGAAGAGTA ]
consensusID : consensus_12496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[TCAAATGCAGGCGAGCAACGGCAGCGGCGGCGGCGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCAAGGGGGACAAGAACTCGATCGTGCAGTCGCGGCGATCTACATCCACNAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCTTNTTTTTTTNCTCGACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACAAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGACGTCAAGCGCGCGGGATCCGGTCNACATGTCCGGGAACAGGCTGTGGACGGAATNACTCAACACCATTGCNGCTTGTGAATGNAAAAGGCNTTGAAGCTCTCCCNGNAATAAAGA]
[+] EMBL AA752885 [TCAAATGCAGGCGAGCAACGGCAGCGGCGGCGGCGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCAAGGGGGACAAGAACTCGATCGTGCAGTCGCGGCGATCTACATCCACNAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCTTNTTTTTTTNCTCGACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACAAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGACGTCAAGCGCGCGGGATCCGGTCNACATGTCCGGGAACAGGCTGTGGACGGAATNACTCAACACCATTGCNGCTTGTGAATGNAAAAGGCNTTGAAGCTCTCCCNGNAATAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12496#0 CGCCAACCATCACATCTGATCGAGAACAAGAAGAAGAAGAAGAAGAAGCAAGAACAGCAA 60
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 GAGGAAGAGATGCAAATGGAGTCGTACTACGGCGCGTTCCACGCCGACGAGGCCGCGTTC 120
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 TTCTTCCCCCACCACGTGCCGGCGTCGCCGGAGCTGCCGTTCGGCCTCATTGCGTCGCCG 180
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 GAGCCGGAGCCGGAGCCGGAGCAGGCGGCGGCGGAGGCGAGGCAGAGCGCGTTCCAGGAG 240
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 TACGGCGGCGCGGTGCACGCCGGAGCGCCGGCGGCGGCGGGGGCTGTCACCACCGGTGGG 300
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 ACGAACATCCACCGGAGGGTGATGGACGTGCTGGGCAGGATGGGCGGCGGCGGCGGCGGG 360
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 GGGGAGAAGGGGGAGGGTGAGGAGATGGAGGAGGAGGAGGAGGTGCCGCAGCGGCGGCGG 420
consensus_12496#1 ---------------------------TCAAATGCAGGCGAGCAACGGCAGCGGCGGCGG 33
* * * *** * *************
consensus_12496#0 CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGC 480
consensus_12496#1 CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGC 93
************************************************************
consensus_12496#0 CAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGC 540
consensus_12496#1 CAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGC 153
************************************************************
consensus_12496#0 TCCGAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAG 600
consensus_12496#1 TCCAAGGGGGACAAGAACTCGATCGTGCAGTCG-CGGCGATCTACATCCACNAGCTGAAG 212
*** ***************************** ***************** ********
consensus_12496#0 GTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGGCCAC 660
consensus_12496#1 GTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCTTNTTTTTTTNCTC 272
********************************************** * * * *
consensus_12496#0 GACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATC 720
consensus_12496#1 GACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACAAGCCGTCGTCGTCGATC 332
****************************************** *****************
consensus_12496#0 GACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGAGCGTCAAGGCGCGCGGGATC 780
consensus_12496#1 GACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGA-CGTCAAG-CGCGCGGGATC 390
**************************************** ******* ***********
consensus_12496#0 CGGTCGAGCATGTCCGGGAACAGGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCG 840
consensus_12496#1 CGGTCNA-CATGTCCGGGAACAGGCTGTGGACGGA-ATNA--CTCAA---CACCATTGCN 443
***** * *************************** ** * ** * *** *****
consensus_12496#0 GCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCTCAAGGAAGTAGAGAGGAACCAGCCT 900
consensus_12496#1 GCTTGTGAA-TGNAAAAGGCNTTGAA----GCTCTCCCNGNAATAAAGA----------- 487
********* ** ******* ** * ****** * * ** ***
consensus_12496#0 GACAGCGATGCCCCATTTCCTGGAAGCAAAGGCTGGACACAGACATCTCATGTGCAAAAT 960
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 GTGTTTTGATCGGTTTTGAAACATGATCCTGCTGGGACCCCCATTTGTTCATTTTTTTAA 1020
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 AAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTT 1080
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 TTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTACAAGGAAAA 1140
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 AAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAG 1200
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 GGAATCAGATTTGTCATATCTCAGTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCA 1260
consensus_12496#1 ------------------------------------------------------------
consensus_12496#0 CATCCCACATAAACTCAAAAAAAAAAAA 1288
consensus_12496#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||