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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1045 fasta sequence
[AAAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT-AGTCGACCTAAGGGCAACCGA-TTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAA-GCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCT-CGCAGAGAGGAAGAATCGAGCTCCT-TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAAAAAAAAAGGTGCATTTTGGCAATCTTCTTTCTGCCTATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGTAGCGA]
[+] EMBL C72691 [AAAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTNGCTTAGTTCCTAAGCGTAGTAAGTCGACCTAAGGGCAACCGATTTAGATAA ]
[+] EMBL AU223335 [ AAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACCCAGAGCTTATTAAGCG ]
[+] EMBL CF295332 [ tagAAAATAAGGAAAAAAACCTCCACTACGCTAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAATGTTGACAAGCACCGAGAGAATTATCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAA GCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCT CGCAGAGAGGAAGAATCGAGCTCCT TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGA ]
[+] EMBL AU091758 [ AAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGANAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCT ]
[+] EMBL AK103638 [ AAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCGGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAA GCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCT CGCAGAGAGGAAGAATCGAGCTCCT TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATG ]
[+] EMBL OS0605A [ CGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTNAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTNGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACGCAGAG TTATTAAGCGAGGATCAACTTCAGAAGATTTGGGT CTGGACATGTTG ]
[+] EMBL BI813499 [ ttGGT CTGGACATGCTGAACGCAGCACAAGTCCCAGGTCTAGGTTTATACAAGGGTCCTCCGCAGAGAGGAAGAATCGAGCTCCTGTTAACCTTGATCCTCCAGAAATGGTGCCC CTGAGCAGGCTGACAACCCTCCACCGGAAACC AACCGGAACGTGAAGATTCCGATGATGATCGTAGGA C AAAGGAGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTTTATACTCTTCTTGAATAC TTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAAAAAAAAA ]
[-] EMBL CF295331 [ TGCAGGGTCTAGGTTTATACAAGGGTCCT CGCAGAGAGGAAGAATCGAGCTCCT TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGACCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAACATCAGCGGTGCATTTTGGCAATCTTCTTTCTGCCTATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGTAGCGA]
[+] EMBL AU223334 [ GAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCNCTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCNCCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAAAAAA ]
consensusID : consensus_12498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGA]
[+] EMBL CF306343 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12498#0 AAAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCG 60
consensus_12498#1 GAGAGAGAGAGAGAGAGAGAGAG--------AGAGAGAGAG------------------A 34
* * * * * * ** * * * * * * *
consensus_12498#0 AATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGC 120
consensus_12498#1 GAGAGCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGC 94
* *******************************************************
consensus_12498#0 GTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAG 180
consensus_12498#1 GTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAG 154
************************************************************
consensus_12498#0 AATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTG 240
consensus_12498#1 AATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTG 214
************************************************************
consensus_12498#0 TTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGG 300
consensus_12498#1 TTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGG 274
************************************************************
consensus_12498#0 AGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGT 360
consensus_12498#1 AGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGT 334
************************************************************
consensus_12498#0 AGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGA 420
consensus_12498#1 AGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGA 394
************************************************************
consensus_12498#0 GGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTA 480
consensus_12498#1 GGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTA 454
************************************************************
consensus_12498#0 GGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCA 540
consensus_12498#1 GGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCA 514
************************************************************
consensus_12498#0 GAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAA 600
consensus_12498#1 GAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAA 574
************************************************************
consensus_12498#0 GATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAG 660
consensus_12498#1 GATTCCGA---------------------------------------------------- 582
********
consensus_12498#0 CGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGG 720
consensus_12498#1 ------------------------------------------------------------
consensus_12498#0 AGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGG 780
consensus_12498#1 ------------------------------------------------------------
consensus_12498#0 CATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCC 840
consensus_12498#1 ------------------------------------------------------------
consensus_12498#0 ATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGT 900
consensus_12498#1 ------------------------------------------------------------
consensus_12498#0 ATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTG 960
consensus_12498#1 ------------------------------------------------------------
consensus_12498#0 TAAAAAAAAAGGTGCATTTTGGCAATCTTCTTTCTGCCTATCAAAAAAAAAAAAAAAAAA 1020
consensus_12498#1 ------------------------------------------------------------
consensus_12498#0 ACACTGTCATGCCGTTGCGTAGCGA 1045
consensus_12498#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||