These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1221 fasta sequence [GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT-CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT-GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA-TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA-TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA-TTGGTTGTTCTAGGGCGTCT-CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT-CAAGTTAGCAG-CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA-CCCAG-CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA-CAGTTTAA-CTTTCAGTAGTATGTTTCG-CAAGGTACAAACCTAGAA-CTGTG-CAACTTT-CAGATCCAT-GAGT-CCCAT-GTTCTA-CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAGCTTCAGTTGAATTCTCGAAAAAAAAAA] [+] EMBL AK073551 [GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTAGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAGCTTCAGTTGAATTC ] [+] EMBL CF314319 [GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAATAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATGGGTTTGGCCGAGTTT AAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTA ] [+] EMBL CA765515 [ GATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACTAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAANTTGNTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTNCCACAAGGGAGTTGNGGCTAAGCTTCTGGNGNGAAGNGCACTACAATTTCCTTGTACGCAACTGACGATCTNCTAANCCGCAAAACCAANAANAACCA TTGGT ] [+] EMBL BE229387 [ CGAGAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTACGCGCGGCGSGGCGSGGCGAGAGTAGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTDGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAAT ] [-] EMBL BI306477 [ ATGAAAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTGGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAG ] [-] EMBL BI305621 [ ATGANAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTGGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAG ] [-] EMBL BI306540 [ ATGAAAGCTATGTACCTATGGAATATTAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTGGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATA AAG ] [-] EMBL CF314320 [ ACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTTTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTAGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAAaaa ] [+] EMBL BI803658 [ gtcCCCCAGGGATGTGACTCCCCCAAGGGA TTGT GCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAACCCAAGAAGAAGCACTTGGTTGTTCTAGGGCGTCTCCACCTCGAGCTTCCTTGAGCTTCTGCTGCTCCAGTTCTTTTCCCTTCCAAGTTACCAGCCATCTGTGGTGCTTACTAGTTTTACTACCATGCCAACCCCAGCCCGCCACTCCAATTCCCTAACCTGAAAGAAGAGCTTATGTACCAGTTTAACCTTTCAGTAGTATGTTTCGCCAAGGTACAAACCTAGAACCTGTGCCAACTTTCCAGATCCATGGAGTCCCCATGGTTCTACCCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGA CTGGCTAGATTTTTTACCATATATAAGCTTCAGTTGAATTCTCGAAAAAAAAAA] consensusID : consensus_12501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [ATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATCGGTTTGGCCGAGTTTCAAATAAAGGGTGATGGAAGTTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCCAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAA] [+] EMBL CF281813 [ATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATCGGTTTGGCCGAGTTTCAAATAAAGGGTGATGGAAGTTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCCAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12501#0 GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGA 60 consensus_12501#1 -----ATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGA 55 ******************************************************* consensus_12501#0 GCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGAT 120 consensus_12501#1 GCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGAT 115 *************************************** ******************** consensus_12501#0 CCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATG 180 consensus_12501#1 CCGACGAAGCTA----------------------------------------ATAGGATG 135 ************ ******** consensus_12501#0 TCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAG 240 consensus_12501#1 TCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAG 195 ************************************************************ consensus_12501#0 GAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAAC 300 consensus_12501#1 GAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAAC 255 ************************************************************ consensus_12501#0 AGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGA 360 consensus_12501#1 AGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGA 315 ************************************************************ consensus_12501#0 GTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAA 420 consensus_12501#1 GTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAA 375 ************************************************************ consensus_12501#0 AGGTTGGGAAATTAT-GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTT 479 consensus_12501#1 AGGTTGGGAAATTATCGGTTTGGCCGAGTTTCAAATAAAGGGTGATGGAAGTTGTCAGTT 435 *************** ********************* ************ ********* consensus_12501#0 CCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTT 539 consensus_12501#1 CCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATC-CAAACATGTGAGAAAGTT 494 ***************************************** ****************** consensus_12501#0 AGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA 599 consensus_12501#1 AGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA 554 ************************************************************ consensus_12501#0 TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACA 659 consensus_12501#1 TAAAGTCTACTTGAA--------------------------------------------- 569 *************** consensus_12501#0 AGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTG 719 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 CCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTG 779 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 GTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAA 839 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 GAAGAAGCATTGGTTGTTCTAGGGCGTCTCACCTCGAGCTTCCTTGAGCTTCTGCTGCTG 899 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 CAGTTCTTTTCCCTTCAAGTTAGCAGCATCTGTGGTGCTTACTAGTTTTACTACCATGGC 959 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 AACCCAGCCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTACAGTTTAACTTT 1019 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 CAGTAGTATGTTTCGCAAGGTACAAACCTAGAACTGTGCAACTTTCAGATCCATGAGTCC 1079 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 CATGTTCTACCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGG 1139 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 TGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAGCTTCA 1199 consensus_12501#1 ------------------------------------------------------------ consensus_12501#0 GTTGAATTCTCGAAAAAAAAAA 1221 consensus_12501#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||