These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 988 fasta sequence [GCCGCTCTTTAGAGCAATAAATCTCTGCAACAATAGTCTTATAACTATCTTCAGCAAAACTGCAACACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGC-AAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT-TGCGATGCTTCTGGACACACGGCTGG-TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCTACTTCCATTCAGAAGTTCTGGAGCCATCCATGGAAGAGTCCCCCTCACACCACCAGAGATGAGGGTCTGACA] [+] EMBL AU225614 [GCCGCTCTTTAGAGCAATAAATCTCTGCAACAATAGTCTTATAACTATCTTCAGCAAAACTGCAACACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGC AAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGAGCGg ] [-] EMBL BI812577 [ ttttttTAAATCTCTGCAACAATAGTCTTATAACTATCTTCAGCAAAACTGCAACACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACATACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGCAAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCAGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATA TGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCATGTGCGATGCTTCTAGACACA GG TGGTTAAATTTTTTTGATTACAAGATATGAAACCATGAAGAGGTCTGAACAG ] [+] EMBL CB673541 [ C AAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCTACTTCCATTCAGAAGTTCTGGAGCCATCCATGGAAGAGTCCCCCTCACACCACCAGAGATGAGGGTCTGACA] [+] EMBL CB655741 [ AACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCCCCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCT ] [+] EMBL CB655774 [ AACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAAGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAATAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTG ] [+] EMBL CB650368 [ AAGCTTAATTACCCTTCCCCCTTAAAGTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCT ] [+] EMBL CB650279 [ AGCTTAATTACCCTTCACCCTTAAAGTACATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCAT TGCGATGCTTCTGGACACACGGCTGG TAACTTTTTTTGATTACAAGATATGAAACAATGAAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTGAATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGTTGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTATGGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATGGTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGC ] [-] EMBL CA999444 [ TTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTACTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTGCGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGATCAATCCCAAAGGAGAACACATCAACCTTTTCGGAGACCAAGCTGCTACT ] consensusID : consensus_12502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [CCGCTCAACAATTAGTATTATAAATTATCTTCAGCAAAACTGCAACAACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGANTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC] [-] EMBL AU225125 [CCGCTCAACAATTAGTATTATAAATTATCTTCAGCAAAACTGCAACAACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGTATATCTCACAAACCACAAAAAAGAAAAACAGACATCTTATTACAAGCAAGGACCTCACTCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTACATTCCGACCGACCGACCGATTGANTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAAAGGAAAACATATTGGGCTCCCTATAACTGACTCTAGAAGCGGCCGCGAATTCGCGGCCGCTAGCGGC] consensusID : consensus_12502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TTTTTTTTTTGGACTCCCAAATAANTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAANGGAAACACATATGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAACATGAACAGAATATGGATCTGAGACCGTCCAGTGGCGATGCTTCTAGACACACGGCTGGTCAAATTTTTTCTGATTACAAGATCATGAAACAATGCACAGAGGTCATGCACACAGNATCAGCATCCTAGGGCACATACAATGACAGGCCATCATT] [-] EMBL BM420566 [TTTTTTTTTTGGACTCCCAAATAANTCAATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAANGGAAACACATATGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCACCTCTAAGCAAAAGGTATAACATGAACAGAATATGGATCTGAGACCGTCCAGTGGCGATGCTTCTAGACACACGGCTGGTCAAATTTTTTCTGATTACAAGATCATGAAACAATGCACAGAGGTCATGCACACAGNATCAGCATCCTAGGGCACATACAATGACAGGCCATCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12502#0 GCCGCTCTTTAGAGCAATAAATCTCTGCAACAAT-AGTCTTATAA-CTATCTTCAGCAAA 58 consensus_12502#1 ----------------------CCGCTCAACAATTAGTATTATAAATTATCTTCAGCAAA 38 consensus_12502#2 -----------------------------------------------TTTTTTTTTTGGA 13 * * ** * consensus_12502#0 ACTGCAACA-CATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGT 117 consensus_12502#1 ACTGCAACAACATCATACATGATGACTTGTGACTGTTACAAGAGTACTTAACAAATCGGT 98 consensus_12502#2 CTCCCAAATAANTCA---ATTATTACCCAGGAAAAGGGGGAGAAAAAGAAAAANGGAAAC 70 *** *** ** ** ** ** *** * ** * consensus_12502#0 ATATCTCA-CAAACCACAAAAAAGAA-AAACAGACATCTTATTACAAGCAAGGACCTCAC 175 consensus_12502#1 ATATCTCA-CAAACCACAAAAAAGAA-AAACAGACATCTTATTACAAGCAAGGACCTCAC 156 consensus_12502#2 ACATATGGGCTCCCTATAACTGACTCTAGACTAATAACTTATTAAACGCA----CCTCTA 126 * ** * * * * ** * * ** * * ******* * *** **** consensus_12502#0 TCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTAC 235 consensus_12502#1 TCTGTGTTCCAAGACTTGCAAAGACCAACCAAGCTTAATTACCCTTCAACATCAGTTTAC 216 consensus_12502#2 AGCAAAAGGTATAACATGAACAGAATA-TGGATCTGAG--ACCGTCCAGTGGCGATGC-- 181 * ** ** * *** * * ** * *** * ** * * consensus_12502#0 ATTCCGACCGACCGACCGATTGACTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGG 295 consensus_12502#1 ATTCCGACCGACCGACCGATTGANTCCCAAATAACTCAATTATTACCCAGGAAAAGGGGG 276 consensus_12502#2 -TTCTAGACACACGGCTGGTCAAATTTTTTCTGATTACAAGATCATGAAACAATGCACAG 240 *** * ** * * * * * * * * * ** * * ** * consensus_12502#0 AGAAAAAGAAAAAAGGAA-AACATATTGGGCTCCCTATAACTGACTCTAGACTAATAACT 354 consensus_12502#1 AGAAAAAGAAAAAAGGAA-AACATATTGGGCTCCCTATAACTGACTCTAGA--AGCGGCC 333 consensus_12502#2 AGGTCATGCACACAGNATCAGCATCCTAGGGCACATACAA-TGAC---AGGCCATCATT- 295 ** * * * * ** * * *** * ** * ** ** **** ** * consensus_12502#0 TATTAAACGCACCTCTAAGCAAAAGGTATAAATGAAAGAATATGGATCTGAGACCGTCCA 414 consensus_12502#1 GCGAATTCGCGGCCGCTAGCGGC------------------------------------- 356 consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 TTGCGATGCTTCTGGACACACGGCTGGTAACTTTTTTTGATTACAAGATATGAAACAATG 474 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 AAGAGGTATGAACAGATAGATCCTAGGGACATAAATGAAGGCATATTTATATCAGTGCTG 534 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 AATTCCTAAATACGCGATCTGGCAGTAGAGAACTTGTCCACCGATGCCCCAGAAGTTTGT 594 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 TGCCGGCCATTCTGTTACAATATCCCATCCCAGGTTGTTCACCTCAGGGTTGCACCTTAT 654 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 GGGATGCAGCCATGGAGCGTAACCTACCAGCAATCTCCGTAAAGGTTGGCCGTTCGGATG 714 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 GTTCTGTCGACCAACATTGCTCCATTAGTGATCTCCACTCTGGATCACAAGAGTCAGGTA 774 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 CTGCTGGTCGTAGAGTGTTGCTCACAATGCCACCTATAATAACACCATAATGCAGATCTG 834 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 CGTATGGTTCTTCTCCTGTTAAGAGTTCCCAGAGAACAATCCCAAAGGAGAACACATCAA 894 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 CCTTTTCGGAGACCAAGCTGCTACTTCCATTCAGAAGTTCTGGAGCCATCCATGGAAGAG 954 consensus_12502#1 ------------------------------------------------------------ consensus_12502#2 ------------------------------------------------------------ consensus_12502#0 TCCCCCTCACACCACCAGAGATGAGGGTCTGACA 988 consensus_12502#1 ---------------------------------- consensus_12502#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||