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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1417 fasta sequence
[CATCAGACCTGATGGTGCTATAGTTCGGCCACCGATGGGGGCACCAATGCCTGGGCTGCATGATTCAACAGTTCCTCCTTTTGCTCCTGAATATGTTGGTCAGCCTCATCCTCTTGGAACTAAAAAGAACAATAGTGTTGGCAATGGACCACATGGAGGCTCAAGGGCTTTATTTGAAGGTGGATTCAATTCTTCACAGAAACATTCCAAGTCATGTGCAGCAAATCCTGGCAGAAACAACGTTAGCCACAAAGATTTTGAAGATAATATGAAGCAGTTTCCAGTGCCTACTCACCTTGACGGTGAAGGTCATCAAAGGGGTCCTAGACCTTTTGAAGGAGGTTTAGGTAGACCTGATGGTTTTGCTGATATATTACCTGGAAGGCCTCCATTGACAAATCATCCTGGTCCATTTCCTATAGGCTTCGGAGAAGATTACCCAAGGAAACCCAATTCGACTGTTAGTTATCCTGACTTTATTTCGCCTGGTGCAGAATTTGGTCATCGTGGTATTGATGGAATACCTACTCTTAGAAATGCAGGTCCATTTCTTCAAGGGATGACAGGCGGGCCTGGAGGTTTGCATAAAGATCAGCTAGGCTCTAGTAACTTTCCTGGGAGTGGACACCATGATTTTGACAACTCAGAGCTCCCTCGTACTCGATTCCATCCTGGTGATGCTTTTGTGCCAAGAAATCTGCACGGTGGTGGTTGGGGTGGTGGCCAATTGCATGGCATTGAGCCTTCTGACTATGGCTACAGAGGTCACATGCATGCAGATGATCCAAATATTCCAATTGATTATTCTCGGCATGGTTTTCCAAAAGAATCTGCCCACTTTGGTTCGGGTGGACACTTGAGAGATGGAGATGTCAGTTGGTGCCGTATATGCAATATTAGCTGTGGTACAGTAGAGAACCTGAATATACATGTAGAGACCAGGGAACACCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTTGCAAAGGGGAGAAAGAATTCCTTCAGGAATTCTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCATGTTGACGTTTTACCATGTTGTCATGTGGACTTTACCTGCTTTTGTGGAGTTCGTTGCTCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTACCTTGGACCTGCAATACTTTAATTTTGT]
[+] EMBL AK060480 [CATCAGACCTGATGGTGCTATAGTTCGGCCACCGATGGGGGCACCAATGCCTGGGCTGCATGATTCAACAGTTCCTCCTTTTGCTCCTGAATATGTTGGTCAGCCTCATCCTCTTGGAACTAAAAAGAACAATAGTGTTGGCAATGGACCACATGGAGGCTCAAGGGCTTTATTTGAAGGTGGATTCAATTCTTCACAGAAACATTCCAAGTCATGTGCAGCAAATCCTGGCAGAAACAACGTTAGCCACAAAGATTTTGAAGATAATATGAAGCAGTTTCCAGTGCCTACTCACCTTGACGGTGAAGGTCATCAAAGGGGTCCTAGACCTTTTGAAGGAGGTTTAGGTAGACCTGATGGTTTTGCTGATATATTACCTGGAAGGCCTCCATTGACAAATCATCCTGGTCCATTTCCTATAGGCTTCGGAGAAGATTACCCAAGGAAACCCAATTCGACTGTTAGTTATCCTGACTTTATTTCGCCTGGTGCAGAATTTGGTCATCGTGGTATTGATGGAATACCTACTCTTAGAAATGCAGGTCCATTTCTTCAAGGGATGACAGGCGGGCCTGGAGGTTTGCATAAAGATCAGCTAGGCTCTAGTAACTTTCCTGGGAGTGGACACCATGATTTTGACAACTCAGAGCTCCCTCGTACTCGATTCCATCCTGGTGATGCTTTTGTGCCAAGAAATCTGCACGGTGGTGGTTGGGGTGGTGGCCAATTGCATGGCATTGAGCCTTCTGACTATGGCTACAGAGGTCACATGCATGCAGATGATCCAAATATTCCAATTGATTATTCTCGGCATGGTTTTCCAAAAGAATCTGCCCACTTTGGTTCGGGTGGACACTTGAGAGATGGAGATGTCAGTTGGTGCCGTATATGCAATATTAGCTGTGGTACAGTAGAGAACCTGAATATACATGTAGAGACCAGGGAACACCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTTGCAAAGGGGAGAAAGAATTCCTTCAGGAATTCTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCATGTTGACGTTTTACCATGTTGTCATGTGGACTTTACCTGCTTTTGTGGAGTTCGTTGCTCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTACCTTGGACCTGCAATACTTTAATTTTGT]
consensusID : consensus_12503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 920 fasta sequence
[GAAACAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTCTTGCATGCTTTCCTGAAGGCGGTAAGGATAGATGCACACTTAGCTTTTTCTATGTTGTGATTTAACTTAGCCACAGATCTTTGGCCAAAATATATAAGCTGATTATGCTAACCCTTTGTCAGTATGTTGAACTAGACCTGTAGAGACTAATTTCATATGTCCTAGACTGTTTCCATATTGGATCTTTTATGATTGATATGACATTTAGTTTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCTTTTGACCTTCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACANGNNNATCTGCATTGACATGTTTGCT]
[+] EMBL CB632035 [GAAACAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTCTTGCATGCTTTCCTGAAGGCGGTAAGGATAGATGCACACTTAGCTTTTTCTATGTTGTGATTTAACTTAGCCACAGATCTTTGGCCAAAATATATAAGCTGATTATGCTAACCCTTTGTCAGTATGTTGAACTAGACCTGTAGAGACTAATTTCATATGTCCTAGACTGTTTCCATATTGGATCTTTTATGATTGATATGACATTTAGTTTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTAGGAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCT ]
[+] EMBL CF195711 [ TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTNNNCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTNNNNTATCTTTTGACCTTCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACANGNNNATCTGCATTGACATGTTTGCT]
[+] EMBL CF195654 [ TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAANNNNNAGTAGNNGTGn ]
consensusID : consensus_12503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence
[TTTTCTTTATACTCGTATAAGGGACCGGGCCAACTGATATTTGTTAAGTAGGAAAAAATTAACAAATGATTACA-TTTATGTTGATACATCGAGTCATCAACTGCTTGATACATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAGTATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTCTTGAAATGCGGTCGGAGCTTGAGCTACTTGTTTAGCTTCCAGCATATCCATCATGAATGCCTCATTAGCTGCTACAAGACTTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCGAATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCCACCTTCACAGCAAAATAAATGCTAGTATGACTGCCTGCTACGGTGAGAACATCATGGCTAACTTAGTTCTTTTTAGATTATTTACATATTATCAATACTGATTATTTGCTCCAAGTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAATCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAATCAAGCAGATAATCTACAGCAACAATCCGCTCAATAATTTGATTCAAACTGAG]
[+] EMBL CB632036 [TTTTCTTTATACTCGTATAAGGGACCGGGCCAACTGATATTTGTTAAGTAGGAAAAAATTAACAAATGATTACA TTTATGTTGATACATCGAGTCATCAACTGCTTGATACATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAGTATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTCTTGAAATGCGGTCGGAGCTTGAGCTACTTGTTTAGCTTCCAGCATATCCATCATGAATGCCTCATTAGCTGCTACAAGACTTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCGAATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCCACCTTCACAGCAAAATAAATGCTAGTATGACTGCCTGCTACGGTGAGAACATCATGGCTAACTTAGTTCTTTTTAGATTATTTACATATTATCAATACTGATTATTTGCTCCAAGTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAATCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAATCAAGCAGATAATCTACAGCAACAATCCGCTCAATAATTTGATTCAAACTGAG]
[-] EMBL CA765823 [ GTAGGAAAAAATTACCAAATGATTNCATTTTATGTTGATACATCGAGTCATCAACTGCTTGATACATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAGTATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTCTTGAAATGCGGTCGGAGCTTGAGCTACTTGTTTAGCTTCCAGCATATCCATCATGAATGCCTCATTAGCTGCTACAAGACTTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCGAATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCCACCTTCACAGCAAAATAAATGCTAGTATGACTGCCTGCTACGGTGAGAACATCATGGCTAACTTAGTTCTTTTTAGATTATTTACATATTATCAATACTGATTATTTGCTCCAAGTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAATCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAATCAAGCAGA ]
consensusID : consensus_12503#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[TAACGCGGCGGTTGTACGCCTCTGTATAGGGCCGAATGGGTTTCCGGGCCCCCGCCTGAGGTCCCCGGTATGGATAAGCTTGATTAGGTAAGCCAGGGCGAACCAAGGGGTCCCCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTGGCAAAGGGGAGAAAGAAGAATTTTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTCCTGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTTTTGCATGCTTTCCTGAAGGCGTCTTGTAGCAGCTAATGAGGCATTCATGATGGATATGCTGGAAGCTAAACAAGTAGCTCAAGCTCCGACCGCATTTCAAGAGCTCGAGTGGCCCAGGAATGTAGACAAACCGTCATACTCCAGCTTGCTGAATTTAATTATTTCATTGTAAAACAGTGTAGTTTCTTGCCCAGTAATGTATCAAGCAGTTAATGACTCGATGTATCAACATAAATGTAATCATTTGTTAATTTTTTTCCTACTTAACAAATATCAGTTGGACCTGTACATTATGCTAGTATAAAGAAAAAAAAAGAATATTATTTGTCAAAAAAAAAAAAAA]
[-] EMBL CA760778 [TAACGCGGCGGTTGTACGCCTCTGTATAGGGCCGAATGGGTTTCCGGGCCCCCGCCTGAGGTCCCCGGTATGGATAAGCTTGATTAGGTAAGCCAGGGCGAACCAAGGGGTCCCCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTGGCAAAGGGGAGAAAGAAGAATTTTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTCCTGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTTTTGCATGCTTTCCTGAAGGCGTCTTGTAGCAGCTAATGAGGCATTCATGATGGATATGCTGGAAGCTAAACAAGTAGCTCAAGCTCCGACCGCATTTCAAGAGCTCGAGTGGCCCAGGAATGTAGACAAACCGTCATACTCCAGCTTGCTGAATTTAATTATTTCATTGTAAAACAGTGTAGTTTCTTGCCCAGTAATGTATCAAGCAGTTAATGACTCGATGTATCAACATAAATGTAATCATTTGTTAATTTTTTTCCTACTTAACAAATATCAGTTGGACCTGTACATTATGCTAGTATAAAGAAAAAAAAAGAATATTATTTGTCAAAAAAAAAAAAAA]
consensusID : consensus_12503#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CGCTCCGCGTTCTCCCACAAGCTTCGCCCGCTCTCGGGCTCTGGCCGCGCCCTTCAAAAACCGTGTCTCCCCTGTTGTCCGCTCTTCCCCCTTATTCCGTGGGTCCCCTCACGCCCCCCGGATTTCCCCGTTAAGCGCCCGGGGGGCCCCCTTTCCGGGGCAAGGGGCTCTTTTTTCAACAAAAGACCCCCCATCTGTCCAAAAGGGGAAAAAAAATTCCTTTGGGGAATTTGGGTGGGCTCCCCAGTCCTTCAAAAAAAAAGGTCTCTTGGAAGGGGTACCTTTCGGGGAATTTGGCCTTAAAACCTCCTGTTATCTTGTTCCCTGGAAACCAGTGTGGAAAGGTTCCTGGTAATCCTTCGGGAACTATTTTAGGCCCTTGAATTTGGGTCTGGTCCATCCTTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCCCCCTTGGCGGTTTTTCCCACTTTCCTGTGGGCCTCTCCTGCCTTTGTGGAGGTCCGTTGCTCCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTATCTTGGACCTGCAAAAAA]
[-] EMBL CA761996 [CGCTCCGCGTTCTCCCACAAGCTTCGCCCGCTCTCGGGCTCTGGCCGCGCCCTTCAAAAACCGTGTCTCCCCTGTTGTCCGCTCTTCCCCCTTATTCCGTGGGTCCCCTCACGCCCCCCGGATTTCCCCGTTAAGCGCCCGGGGGGCCCCCTTTCCGGGGCAAGGGGCTCTTTTTTCAACAAAAGACCCCCCATCTGTCCAAAAGGGGAAAAAAAATTCCTTTGGGGAATTTGGGTGGGCTCCCCAGTCCTTCAAAAAAAAAGGTCTCTTGGAAGGGGTACCTTTCGGGGAATTTGGCCTTAAAACCTCCTGTTATCTTGTTCCCTGGAAACCAGTGTGGAAAGGTTCCTGGTAATCCTTCGGGAACTATTTTAGGCCCTTGAATTTGGGTCTGGTCCATCCTTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCCCCCTTGGCGGTTTTTCCCACTTTCCTGTGGGCCTCTCCTGCCTTTGTGGAGGTCCGTTGCTCCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTATCTTGGACCTGCAAAAAA]
consensusID : consensus_12503#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTAGGAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCTTTTGACCTTCCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACACGTTTATCNNCNNNNNCATGNNTGCTNNNNNTTTTGNGANNNNNNNNN]
[+] EMBL CF195797 [TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTAGGAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCTTTTGACCTTCCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACACGTTTATCNNCNNNNNCATGNNTGCTNNNNNTTTTGNGANNNNNNNNN]
consensusID : consensus_12503#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTNNNCACAAAAGGCCAAATTTNNNNNATTAAGTTGCTTGNNGTTNNNNNNNNNNCTATGNNNNN]
[+] EMBL CF195720 [TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTNNNCACAAAAGGCCAAATTTNNNNNATTAAGTTGCTTGNNGTTNNNNNNNNNNCTATGNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 CATCAGACCTGATGGTGCTATAGTTCGGCCACCGATGGGGGCACCAATGCCTGGGCTGCA 60
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 TGATTCAACAGTTCCTCCTTTTGCTCCTGAATATGTTGGTCAGCCTCATCCTCTTGGAAC 120
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 TAAAAAGAACAATAGTGTTGGCAATGGACCACATGGAGGCTCAAGGGCTTTATTTGAAGG 180
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 TGGATTCAATTCTTCACAGAAACATTCCAAGTCATGTGCAGCAAATCCTGGCAGAAACAA 240
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 CGTTAGCCACAAAGATTTTGAAGATAATATGAAGCAGTTTCCAGTGCCTACTCACCTTGA 300
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 CGGTGAAGGTCATCAAAGGGGTCCTAGACCTTTTGAAGGAGGTTTAGGTAGACCTGATGG 360
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 TTTTGCTGATATATTACCTGGAAGGCCTCCATTGACAAATCATCCTGGTCCATTTCCTAT 420
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 -----------------------GAAACAAGTACCTGGGAAGGGTAGCTTTCGTGGAAAT 37
consensus_12503#0 AGGCTTCGGAGAAGATTACCCAAGGAAACCCAATTCGACTGTTAGTTATCCTGACTTTAT 480
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 AGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAA 97
consensus_12503#0 TTCGCCTGGTGCAGAATTTGGTCATCGTGGTATTGATGGAATACCTACTCTTAGAAATGC 540
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 TGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGA 157
consensus_12503#0 AGGTCCATTTCTTCAAGGGATGACAGGCGGGCCTGGAGGTTTGCATAAAGATCAGCTAGG 600
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 AATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTCTTGCATGCTTTCC 217
consensus_12503#0 CTCTAGTAACTTTCCTGGGAGTGGACACCATGATTTTGACAACTCAGAGCTCCCTCGTAC 660
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 TGAAGGCGGTAAGGATAGATGCACACTTAGCTTTTTCTATGTTGTGATTTAACTTAGCCA 277
consensus_12503#0 TCGATTCCATCCTGGTGATGCTTTTGTGCCAAGAAATCTGCACGGTGGTGGTTGGGGTGG 720
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 CAGATCTTTGGCCAAAATATATAAGCTGATTATGCTAACCCTTTGTCAGTATGTTGAACT 337
consensus_12503#0 TGGCCAATTGCATGGCATTGAGCCTTCTGACTATGGCTACAGAGGTCACATGCATGCAGA 780
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 AGACCTGTAGAGACTAATTTCATATGTCCTAGACTGTTTCCATATTGGATCTTTTATGAT 397
consensus_12503#0 TGATCCAAATATTCCAATTGATTATTCTCGGCATGGTTTTCCAAAAGAATCTGCCCACTT 840
consensus_12503#4 ------------------------CGCTCCGC---GTTCTCCCACAAGCTTCGCCCGCTC 33
consensus_12503#3 ------------------------------------------------------------
consensus_12503#2 ---------TTTTCTTTATACTCGTATAAGGGACCGGGCCAACTGATATTTGTTAAGTAG 51
consensus_12503#5 ----------------TTCTTTGTAAATAAAAACTG----GTTGGACTAGCTGATCACAT 40
consensus_12503#6 ----------------TTCTTTGTAAATAAAAACTG----GTTGGACTAGCTGATCACAT 40
consensus_12503#1 TGATATGACATTTAGTTTCTTTGTAAATAAAAACTG----GTTGGACTAGCTGATCACAT 453
consensus_12503#0 TGG---TTCGGGTGGACACTTGAGAGATGGAGATGTCA--GTTGGTGCCGTATATGCAAT 895
consensus_12503#4 TCGGGCTCTGGCCGCGCCCTTCAAAAACCGTGTCTCCCCTGTTGTCCGCTCTTCCCCCTT 93
consensus_12503#3 TAACGCGGCGGTTGTACGCCTC-TGTATAGGGCCGAATGGGTTTCCGGGCCCCCGCCTGA 59
consensus_12503#2 GAAAAAATTAACAAATGATTACATTTATGTTGATACATCGAGTCATCAACTGCTTGATAC 111
* *
consensus_12503#5 ATAGA-AATTGATTTAGTACAATGTTACAAGGCCTAT----AGATGTCAAGGACATTTTC 95
consensus_12503#6 ATAGA-AATTGATTTAGTACAATGTTACAAGGCCTAT----AGATGTCAAGGACATTTTC 95
consensus_12503#1 ATAGA-AATTGATTTAGTACAATGTTACAAGGCCTAT----AGATGTCAAGGACATTTTC 508
consensus_12503#0 ATTAG-CTGTGGTACAGTAGAGAACCTGAATATACATGT--AGAGACCAGGGAACACCAT 952
consensus_12503#4 ATTCC-GTGGGTCCCCTCACGCCCCCCGGATTTCCCCGTTAAGCGCCCGGGGGGCCCCCT 152
consensus_12503#3 GGTCC-CCGGTATGGATAAGCTTGATTAGGTAAGCCAGG-GCGAACCAAGGGGTCCCCAT 117
consensus_12503#2 ATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAG 171
*
consensus_12503#5 TGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGA 155
consensus_12503#6 TGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGA 155
consensus_12503#1 TGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGA 568
consensus_12503#0 CAACATG-CAA-TGGACATTGTTCTGAAAATGAAGCA-----AGATGTTGCAAAGGGGAG 1005
consensus_12503#4 TTCCGGGGCAA-GGGGCTCTTTTTTCAACAAAAGACCC-CCCATCTGTCCAAAAGGGGAA 210
consensus_12503#3 CAACATG-CAA-TGGACATTGTTCTGAAAATGAAGCA-----AGATGTGGCAAAGGGGAG 170
consensus_12503#2 TATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTC-TTGAAATGCGGTCGGAGCTTG 230
* * * *
consensus_12503#5 TCATAATTAGTA----TCCACCATTTAGTTAGG----GGAACCTTGAAAATATCCTAATG 207
consensus_12503#6 TCATAATTAGTA----TCCACCATTTAGTTAGG----GGAACCTTGAAAATATCCTAATG 207
consensus_12503#1 TCATAATTAGTA----TCCACCATTTAGTTAGG----GGAACCTTGAAAATATCCTAATG 620
consensus_12503#0 AAAGAATTCCTT----CAGG-AATTCTGGTGG--TCCCAAGTCATTCAAGAAAAAAG--T 1056
consensus_12503#4 AAAAAATTCCTT----TGGGGAATTTGGGTGGGCTCCCCAGTCCTTCAAAAAAAAAGGTC 266
consensus_12503#3 AAAGAA--------------GAATTTTGGTGGT--CCCAAGTCATTCAAGAAAAAAG--T 212
consensus_12503#2 AGCTACTTGTTTAGCTTCCAGCATATCCATCAT-GAATGCCTCATTAGCTGCTACAAGAC 289
* ** * * *
consensus_12503#5 ATGCAAAAGGTGTAGCTAA---CA-ATACCCTCACCATGGAATATGTCGT-GGCTTTGGG 262
consensus_12503#6 ATGCAAAAGGTGTAGCTAA---CA-ATACCCTCACCATGGAATATGTCGT-GGCTTTGGG 262
consensus_12503#1 ATGCAAAAGGTGTAGCTAA---CA-ATACCCTCACCATGGAATATGTCGT-GGCTTTGGG 675
consensus_12503#0 ACCTGGGAAGGGTAGCTTT---CGTGGAAATAGGCGTTAGAAC-TCCTGT-TATCTTGTT 1111
consensus_12503#4 TCTTGGAAGGGGTACCTTT---CGGGGAATTTGGCCTTAAAACCTCCTGT-TATCTTGTT 322
consensus_12503#3 ACCTGGGAAGGGTAGCTTT---CGTGGAAATAGGCGTTAGAAC-TCCTGT-TATCTTGTT 267
consensus_12503#2 TTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCG 349
* *** * * ** * **
consensus_12503#5 C-TGGAAAATGGTTCCACGACAATTATGACTAGCAT----CTAAGGAAGCATG--GGAAA 315
consensus_12503#6 C-TGGAAAATGGTTCCACGACAATTATGACTAGCAT----CTAAGGAAGCATG--GGAAA 315
consensus_12503#1 C-TGGAAAATGGTTCCACGACAATTATGACTAGCAT----CTAAGGAAGCATG--GGAAA 728
consensus_12503#0 CCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGC----TTCTGGAACTATC--TGAGA 1165
consensus_12503#4 CCCTGGAAACCAGTGTGGAAAGGTTCCTGGTAATCC----TTCGGGAACTATT--TTAGG 376
consensus_12503#3 CCTTGGAGACAGGTGTCGGAAGGTTCCTGAAATTGACAAGTTTAGGAAAAATCCCTGAGG 327
consensus_12503#2 AATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCC 409
* * * * * * * *
consensus_12503#5 TATACTAACTCA---CTGAAGTAGGAGTAGTTG--------TGAAGTTAAGTGCTA-GGC 363
consensus_12503#6 TATACTAACTCA---CTGAAGTNNNAGTAGTTG--------TGAAGTTAAGTGCTN-NNC 363
consensus_12503#1 TATACTAACTCA---CTGAAGTNNNAGTAGTTG--------TGAAGTTAAGTGCTA-GGC 776
consensus_12503#0 CCATTGAAATTGGGTCTTGTCCATACATTTTGG--------TTAAGGTA-GTGCTG-CAT 1215
consensus_12503#4 CCCTTGAATTTGGGTCTGGTCCATCC-TTTTGG--------TTAAGGTA-GTGCTG-CAT 425
consensus_12503#3 GGGCTCAACTGTCG-TTTTTGCATGCTTTCCTGAAGGCGTCTTGTAGCAGCTAATGAGGC 386
consensus_12503#2 ACCTTCACAGCAAAATAAATGCTAGTATGACTG---------CCTGCTA--CGGTGAGAA 458
* * * * *
consensus_12503#5 ACAAAAGGCCAAATTTGAA-TAATTAAGTTGCTTG---GTGTTGGGATTGAACC-TATGT 418
consensus_12503#6 ACAAAAGGCCAAATTTNNN-NNATTAAGTTGCTTG---NNGTTNNNNNNNNNNC-TATGN 418
consensus_12503#1 ACAAAAGGCCAAATTTGAA-TAATTAAGTTGCTTG---GTGTTGGGATTGAACC-TATGT 831
consensus_12503#0 GTTTGGAATAGAATTACC--ATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTT 1273
consensus_12503#4 GTTTGGAATAGAATTACCC-ATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTT 484
consensus_12503#3 ATTCATGATGGATATGCTGGAAGCTAAACAAGTAGCTCAAGCTCCGACCGCATTTCAAGA 446
consensus_12503#2 CATCATGGCTAACTTAGTTCTTTTTAGATTATTTA--CATATTATCAATACTGATTATTT 516
* * * * *
consensus_12503#5 AGAATATCTTTTGACCTTCCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATG-A 477
consensus_12503#6 NNNN-------------------------------------------------------- 422
consensus_12503#1 AGAATATCTTTTGACCTTC-ATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATG-A 889
consensus_12503#0 ATGTTGCCGTTTTACCATG-TTGACGTTTTACCATGTTGTCATGT---GGACTTTACC-T 1328
consensus_12503#4 ATGTTGCCGTTTTACCCCCCTTGGCGGTTTTTCCCACTTTCCTGT---GGGCCTCTCC-T 540
consensus_12503#3 GCTCGAGTGGCCCAGGAATGTAGACAAACCGTCATACTCCAGCTTGCTGAATTTAATTAT 506
consensus_12503#2 GCTCCAA-GTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAA 575
consensus_12503#5 CCACACGTTTATCNNCNNNNNCATGNN-----TGCTNNNN-NTTTTGNGANNNNNNNNN- 530
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 CCACANGNNNATCTGCATTGACATGTT-----TGCT------------------------ 920
consensus_12503#0 GCTTTTGTGGAG-TTCGTTGCTCC-TA-----TATTGGAT-GCTCAACTCACAACTCTGA 1380
consensus_12503#4 GCCTTTGTGGAGGTCCGTTGCTCCCTA-----TATTGGAT-GCTCAACTCACAACTCTGA 594
consensus_12503#3 TTCATTGTAAAACAGTGTAGTTTCTTGCCCAGTAATGTATCAAGCAGTTAATGACTCGAT 566
consensus_12503#2 TCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAA 635
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 GGAT--GCTTACCTTGGACCTGCAATACTTTAATTTTGT--------------------- 1417
consensus_12503#4 GGAT--GCTTATCTTGGACCTGCAAAAAA------------------------------- 621
consensus_12503#3 GTATCAACATAAATGTAATCATTTGTTAATTTTTTTCCTACTTAACAAATATCAGTTGGA 626
consensus_12503#2 TCAAGCAGATAATCTACAGCAACAATCCGCTCAATAATTTGATTCAAACTGAG------- 688
consensus_12503#5 ------------------------------------------------------------
consensus_12503#6 ------------------------------------------------------------
consensus_12503#1 ------------------------------------------------------------
consensus_12503#0 ------------------------------------------------------------
consensus_12503#4 ------------------------------------------------------------
consensus_12503#3 CCTGTACATTATGCTAGTATAAAGAAAAAAAAAGAATATTATTTGTCAAAAAAAAAAAAA 686
consensus_12503#2 ------------------------------------------------------------
consensus_12503#5 -
consensus_12503#6 -
consensus_12503#1 -
consensus_12503#0 -
consensus_12503#4 -
consensus_12503#3 A 687
consensus_12503#2 -
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||