These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1190 fasta sequence [AGTTTCTAATAAAGGGAGATCTATTGCCTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGG-CGAAGGCGCGG-TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG-TGCAGGAGC-TGGA-GAACTACGC-GGCGTACAAGGCCGAGGAGACGACCGACGCGC-TGGGCGGC-TGCTTCCGCA-TCGCCGAGAACA-TCAGGGAGGACGCCGCCAACACGCTCGTCACCCTCAACAAGCAGGGCCAGCAGATCAGCCGCACCCACGAGAAGGCCGTCGAAATCGACCAGGACC-TCTCCCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGAGGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG-CAGNTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT-CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA-TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAAAAAAAAA] [+] EMBL AK069978 [AGTTTCTAATAAAGGGAGATCTATTGCCTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGG CGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGC TGGA GAACTACGC GGCGTACAAGGCCGAGGAGACGACCGACGCGC TGGGCGGC TGCCTCCGCA TCGCCGAGAACA TCAGGGAGGACGCCGCCAACACGCTCGTCACCCTCAACAAGCAGGGCCAGCAGATCAGCCGCACCCACGAGAAGGCCGTCGAAATCGACCAGGACC TCT CCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGAGGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG CAGCTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATAT ] [+] EMBL C93620 [ TCTATTGCNTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTNTCACGTGGCGGCAAGGCCNTTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGGCCGAAGGCGCGGTTACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGC TGGAGGAACTACGCGGGCGTACAA ] [+] EMBL C93635 [ CCTCTTTTNCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTNTCACGTGGCGGCAAGGCCNCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGGCCGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGCTTGGA GAACTACGC GGCGTACAAGGCCGAGGAGACGACCGACGCGC Tt ] [+] EMBL C72634 [ TCTTTTNCCCTCNAAGGGGGANGATGATCAGGGANAAANGGAGGGCCAAACAATACAAAAAGANTTACTGCAGGAACCCTANGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCNGGC CGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGC TGGA GAACTACGC GGCGTACAAGGCCGANGAGACGACCGACGCGC TGGGCGGC TGCTTCCGCA TCGCCGAGAACA TTAGGGANGACGCCGCCA ] [+] EMBL C72697 [ TTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGGCCGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGGTTGCAGGAGC TGGA GAACTACGC GGCGTACAAGGCCGANGAGACGACCGACGCGCTTGGGCGGCTTGCTTCCGCATTCGCCGAGAACATTCAGGGAag ] [+] EMBL AU085869 [ ACCAGGACCTTCTCCCAAGGNCGAGTCGCTTCTGGGGANCCTTGGAGGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG CA NTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAA ] [-] EMBL CA762030 [ CAGGACC TCTCCCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGAGGGTTCTTCTCCCAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTNGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG GAGNTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCCTGATAGGCAAAACAAAGCGCTGGATGATTTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATTTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTTTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACCTCAAAAAAAAAAAAAAAA] [+] EMBL AU165523 [ CAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGNAAGTCGGCTAATCGACA NTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAA ] [+] EMBL AU093782 [ gcnCTACCACCGCCATGGAGAAAGTTCAGNTGGAGAAACAAAAGCAGGATGATNCCCTAGATGATCTCCAGTGGTNTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCACAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGANAGAGAAATTACATATTGTTGACATC ] consensusID : consensus_12517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TTTGTCTAGCATAGCTAGCATCCATTATCTTCATTCTTTTTGGGTTTTTCGCAGTGGTAGNAACAAAGTCAGGATGGATGCCCTAGATGATCTCAGTGGTGTGTCTTGGCAGTCTCAAGGGCATGGCATTGTGACATGGGTTCAGAGCTTGATAGCCAAAACAAGCGCTGGATGATCTGCCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGACCAACCACGTGCACGCAATGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTCCCTTGATCTGCCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCCCTGGCACAGCTTCTGCTTATCAATTAACTGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTTTCTGTTTCTTAATTTTCACGATGCTGTTTTCTTGACGATCAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAA] [+] EMBL BI806678 [TTTGTCTAGCATAGCTAGCATCCATTATCTTCATTCTTTTTGGGTTTTTCGCAGTGGTAGNAACAAAGTCAGGATGGATGCCCTAGATGATCTCAGTGGTGTGTCTTGGCAGTCTCAAGGGCATGGCATTGTGACATGGGTTCAGAGCTTGATAGCCAAAACAAGCGCTGGATGATCTGCCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGACCAACCACGTGCACGCAATGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTCCCTTGATCTGCCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCCCTGGCACAGCTTCTGCTTATCAATTAACTGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTTTCTGTTTCTTAATTTTCACGATGCTGTTTTCTTGACGATCAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12517#0 AGTTTCTAATAAAGGGAGATCTATTGCCTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATC 60 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 AGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTAT 120 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 AATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGT 180 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 CGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGG 240 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 GGGCGTACACGGCGCCCAGCGGCGCGGCGAAGGCGCGGTACAAGGACGACTTCCGCGACT 300 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 CGGGCGGGCTGGAGCAGCAGTCGGTGCAGGAGCTGGAGAACTACGCGGCGTACAAGGCCG 360 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 AGGAGACGACCGACGCGCTGGGCGGCTGCTTCCGCATCGCCGAGAACATCAGGGAGGACG 420 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 CCGCCAACACGCTCGTCACCCTCAACAAGCAGGGCCAGCAGATCAGCCGCACCCACGAGA 480 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 AGGCCGTCGAAATCGACCAGGACCTCTCCCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGA 540 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 GGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCAT 600 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 GTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGG 660 consensus_12517#1 ------------------------------------------------------------ consensus_12517#0 CTGAGCCCTAGTGGGAAGTCGGCTA--ATCGCAGNTACGCCGAGCCTACCACCGCCATGG 718 consensus_12517#1 -----------------TTTGTCTAGCATAGCTAGCATCCATTATCTTCATTCTTTTTGG 43 * * *** ** ** * * ** * * *** consensus_12517#0 AGAAAGTTCAGGTGGAGAAACAAAAGCAGGATG-ATGCCCTAGATGATCTCAGTGGTGTG 777 consensus_12517#1 GTTTTTCGCAGTGGTAGNAACAAAGTCAGGATGGATGCCCTAGATGATCTCAGTGGTGTG 103 *** * ** ****** ******* ************************** consensus_12517#0 CTTGGGCAG-CTCAAGGGCATGGC-TTGTGACATGGGTTCAGAGCTTGATAGGCAAAACA 835 consensus_12517#1 TCTTGGCAGTCTCAAGGGCATGGCATTGTGACATGGGTTCAGAGCTTGATAGCCAAAACA 163 * ***** ************** *************************** ******* consensus_12517#0 AAGCGCTGGATGATCTGC-AAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCA 894 consensus_12517#1 A-GCGCTGGATGATCTGCCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGACCA 222 * **************** ************************************** ** consensus_12517#0 AACCAACGTGCACGCAA-GCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTT 953 consensus_12517#1 ACC--ACGTGCACGCAATGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTT 280 * * ************ ****************************************** consensus_12517#0 GCCTAATTGCCTTGATCTGC-AGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTG 1012 consensus_12517#1 GCCTAATTCCCTTGATCTGCCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCCCTG 340 ******** *********** *********************************** *** consensus_12517#0 GCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATAT 1072 consensus_12517#1 GCACAGCTTCTGCTTATCAATTAACTGG-TTTTGTTTTGTATTACCGGGGGCATATATAT 399 **************************** ******************************* consensus_12517#0 TTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGT 1132 consensus_12517#1 TTTTTCTGTTTCTTAATTTTCACGATG-CTGTTTTCTTGACGATCAA-GTTGTATACTGT 457 *************************** ******************* ************ consensus_12517#0 ATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAAAAAAAAA 1190 consensus_12517#1 ATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAA------- 508 *************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||