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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1190 fasta sequence
[AGTTTCTAATAAAGGGAGATCTATTGCCTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGG-CGAAGGCGCGG-TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG-TGCAGGAGC-TGGA-GAACTACGC-GGCGTACAAGGCCGAGGAGACGACCGACGCGC-TGGGCGGC-TGCTTCCGCA-TCGCCGAGAACA-TCAGGGAGGACGCCGCCAACACGCTCGTCACCCTCAACAAGCAGGGCCAGCAGATCAGCCGCACCCACGAGAAGGCCGTCGAAATCGACCAGGACC-TCTCCCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGAGGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG-CAGNTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT-CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA-TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAAAAAAAAA]
[+] EMBL AK069978 [AGTTTCTAATAAAGGGAGATCTATTGCCTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGG CGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGC TGGA GAACTACGC GGCGTACAAGGCCGAGGAGACGACCGACGCGC TGGGCGGC TGCCTCCGCA TCGCCGAGAACA TCAGGGAGGACGCCGCCAACACGCTCGTCACCCTCAACAAGCAGGGCCAGCAGATCAGCCGCACCCACGAGAAGGCCGTCGAAATCGACCAGGACC TCT CCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGAGGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG CAGCTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATAT ]
[+] EMBL C93620 [ TCTATTGCNTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTNTCACGTGGCGGCAAGGCCNTTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGGCCGAAGGCGCGGTTACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGC TGGAGGAACTACGCGGGCGTACAA ]
[+] EMBL C93635 [ CCTCTTTTNCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTNTCACGTGGCGGCAAGGCCNCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGGCCGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGCTTGGA GAACTACGC GGCGTACAAGGCCGAGGAGACGACCGACGCGC Tt ]
[+] EMBL C72634 [ TCTTTTNCCCTCNAAGGGGGANGATGATCAGGGANAAANGGAGGGCCAAACAATACAAAAAGANTTACTGCAGGAACCCTANGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCNGGC CGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGG TGCAGGAGC TGGA GAACTACGC GGCGTACAAGGCCGANGAGACGACCGACGCGC TGGGCGGC TGCTTCCGCA TCGCCGAGAACA TTAGGGANGACGCCGCCA ]
[+] EMBL C72697 [ TTTGCCCTCCAAGGGGGAGGAGGATCAGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTATAATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGTCGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGGGGGCGTACACGGCGCCCAGCGGCGCGGCCGAAGGCGCGG TACAAGGACGACTTCCGCGACTCGGGCGGGCTGGAGCAGCAGTCGGTTGCAGGAGC TGGA GAACTACGC GGCGTACAAGGCCGANGAGACGACCGACGCGCTTGGGCGGCTTGCTTCCGCATTCGCCGAGAACATTCAGGGAag ]
[+] EMBL AU085869 [ ACCAGGACCTTCTCCCAAGGNCGAGTCGCTTCTGGGGANCCTTGGAGGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG CA NTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAA ]
[-] EMBL CA762030 [ CAGGACC TCTCCCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGAGGGTTCTTCTCCCAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTNGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGAAGTCGGCTAATCG GAGNTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCCTGATAGGCAAAACAAAGCGCTGGATGATTTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATTTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTTTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACCTCAAAAAAAAAAAAAAAA]
[+] EMBL AU165523 [ CAAGAAAACAAGGCAGATCAAGGGTCCAGCCCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGNAAGTCGGCTAATCGACA NTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCCCTAGATGATCT CAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAA ]
[+] EMBL AU093782 [ gcnCTACCACCGCCATGGAGAAAGTTCAGNTGGAGAAACAAAAGCAGGATGATNCCCTAGATGATCTCCAGTGGTNTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCACAACAAAGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATA TTTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGTATGTACATATATGAGANAGAGAAATTACATATTGTTGACATC ]
consensusID : consensus_12517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[TTTGTCTAGCATAGCTAGCATCCATTATCTTCATTCTTTTTGGGTTTTTCGCAGTGGTAGNAACAAAGTCAGGATGGATGCCCTAGATGATCTCAGTGGTGTGTCTTGGCAGTCTCAAGGGCATGGCATTGTGACATGGGTTCAGAGCTTGATAGCCAAAACAAGCGCTGGATGATCTGCCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGACCAACCACGTGCACGCAATGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTCCCTTGATCTGCCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCCCTGGCACAGCTTCTGCTTATCAATTAACTGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTTTCTGTTTCTTAATTTTCACGATGCTGTTTTCTTGACGATCAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAA]
[+] EMBL BI806678 [TTTGTCTAGCATAGCTAGCATCCATTATCTTCATTCTTTTTGGGTTTTTCGCAGTGGTAGNAACAAAGTCAGGATGGATGCCCTAGATGATCTCAGTGGTGTGTCTTGGCAGTCTCAAGGGCATGGCATTGTGACATGGGTTCAGAGCTTGATAGCCAAAACAAGCGCTGGATGATCTGCCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGACCAACCACGTGCACGCAATGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTCCCTTGATCTGCCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCCCTGGCACAGCTTCTGCTTATCAATTAACTGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTTTCTGTTTCTTAATTTTCACGATGCTGTTTTCTTGACGATCAAGTTGTATACTGTATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12517#0 AGTTTCTAATAAAGGGAGATCTATTGCCTCCTCTTTTGCCCTCCAAGGGGGAGGAGGATC 60
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 AGGGAGAAAGGGAGGGCCAAACAATACAAAAAGAATTACTGCAGGAACCCTAGGGATTAT 120
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 AATTAGCGAGTTAACGGCAAATTAAGATGCCGGTGTCACGTGGCGGCAAGGCCGCTTCGT 180
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 CGAAGGCCGACCCCTTCGACTCGGACTCGGACTCGGACCTGGTCCCGAAGAAGAAGCCGG 240
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 GGGCGTACACGGCGCCCAGCGGCGCGGCGAAGGCGCGGTACAAGGACGACTTCCGCGACT 300
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 CGGGCGGGCTGGAGCAGCAGTCGGTGCAGGAGCTGGAGAACTACGCGGCGTACAAGGCCG 360
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 AGGAGACGACCGACGCGCTGGGCGGCTGCTTCCGCATCGCCGAGAACATCAGGGAGGACG 420
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 CCGCCAACACGCTCGTCACCCTCAACAAGCAGGGCCAGCAGATCAGCCGCACCCACGAGA 480
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 AGGCCGTCGAAATCGACCAGGACCTCTCCCAAGGGCGAGTCGCTTCTGGGGAGCCTTGGA 540
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 GGGTTCTTCTCCAAGCCATGGAAGCCCAAGAAAACAAGGCAGATCAAGGGTCCAGCCCAT 600
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 GTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGG 660
consensus_12517#1 ------------------------------------------------------------
consensus_12517#0 CTGAGCCCTAGTGGGAAGTCGGCTA--ATCGCAGNTACGCCGAGCCTACCACCGCCATGG 718
consensus_12517#1 -----------------TTTGTCTAGCATAGCTAGCATCCATTATCTTCATTCTTTTTGG 43
* * *** ** ** * * ** * * ***
consensus_12517#0 AGAAAGTTCAGGTGGAGAAACAAAAGCAGGATG-ATGCCCTAGATGATCTCAGTGGTGTG 777
consensus_12517#1 GTTTTTCGCAGTGGTAGNAACAAAGTCAGGATGGATGCCCTAGATGATCTCAGTGGTGTG 103
*** * ** ****** ******* **************************
consensus_12517#0 CTTGGGCAG-CTCAAGGGCATGGC-TTGTGACATGGGTTCAGAGCTTGATAGGCAAAACA 835
consensus_12517#1 TCTTGGCAGTCTCAAGGGCATGGCATTGTGACATGGGTTCAGAGCTTGATAGCCAAAACA 163
* ***** ************** *************************** *******
consensus_12517#0 AAGCGCTGGATGATCTGC-AAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCA 894
consensus_12517#1 A-GCGCTGGATGATCTGCCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGACCA 222
* **************** ************************************** **
consensus_12517#0 AACCAACGTGCACGCAA-GCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTT 953
consensus_12517#1 ACC--ACGTGCACGCAATGCTAATCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTT 280
* * ************ ******************************************
consensus_12517#0 GCCTAATTGCCTTGATCTGC-AGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCGCTG 1012
consensus_12517#1 GCCTAATTCCCTTGATCTGCCAGTGCATTGGGGAAAATGTTAAAAGAGTCGTCCTCCCTG 340
******** *********** *********************************** ***
consensus_12517#0 GCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATAT 1072
consensus_12517#1 GCACAGCTTCTGCTTATCAATTAACTGG-TTTTGTTTTGTATTACCGGGGGCATATATAT 399
**************************** *******************************
consensus_12517#0 TTTTTCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATCAAAGTTGTATACTGT 1132
consensus_12517#1 TTTTTCTGTTTCTTAATTTTCACGATG-CTGTTTTCTTGACGATCAA-GTTGTATACTGT 457
*************************** ******************* ************
consensus_12517#0 ATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAAAAAAAAA 1190
consensus_12517#1 ATGTACATATATGAGAAAGAGAAATTACATATTGTTGACATCAAAAAAAAA------- 508
***************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||