These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 719 fasta sequence [CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTCGCGCCACCCGCCGCGCGAGCCGAGCCTCTCCATCACGGCGGCGC] [+] EMBL CB645995 [CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTTCACATCAAACGGCTGGTCGTAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAAAGAAGAGAAGTATTTGGTTGTGTGTACTAGAAATCTCCTTGAGGCGGAGCAGCTGGATCCAAATCGAGATCTTGGATCTTGGCGGGGTTCATCGTCAATGGCGGATCGGATCGGATCACATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCAAACCACGGACCAGTTCTTGGTCTTTACGTCGAACACCCAAAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCAACCTCGCGCCACCCGCCGCGCGAGCCGA ] [+] EMBL CB662103 [CTTTTTTTTTTCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAAATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGG ] [+] EMBL CB675675 [ ccttAAAAAATGGACTCTGCAATCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGACAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTACAGTAGAGTACTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCAAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACAACACGCTCGCCGCCGCCGACGCAAACGG ] [+] EMBL CB660641 [ ATGTACAATGGATTGGCTTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAAAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCG ] [+] EMBL CB667567 [ TGTACAATGGATTGGATTATTCCTTCTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGATCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTT ] [+] EMBL CB647075 [ TCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGAGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGATAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAATCCTCGATGGCGCCGGTGACGACTACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTCG ] [+] EMBL CB669594 [ CCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAATAGAGATCTCCTTGAGGCGGACCAGCTGGATCCAGATCCAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCACATGCGGACGGCGGCCACGGACAAGGCCAATCCGGCGAACTCTGGAGGTGGGCGAACCACCGCCCACTTCTTGGTCTTTACtac ] [+] EMBL CB644685 [ TCCTTTTTTTGCGGGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGGCTTTACAACGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACAACGACGCGCTCGCCGCCGTCGACTCAAACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTTGCGCCACCCGCCGCGCGAGCCGAGCCTCTCCATCACGGCGGCGC] consensusID : consensus_12521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCA-TGGTTTTCT-TGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCTCCTCTTCTCCTTGTGATTCTTTCTTGGGCACATACTACTGTTCTAGTAGAGTAGAGTAGAGTAGTATTTGGTTGTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGAACGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGATCAGATGCGGACGGCGGCAACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGNCCCCCTTGTCT] [+] EMBL CA761161 [TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCA TGGTTTTCT TGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCTCCTCTTCTCCTTGTGATTCTTTCTTGGGCACATACTACTGTTCTAGTAGAGTAGAGTAGAGTAGTATTTGGTTGTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGAACGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGATCAGATGCGGACGGCGGCAACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGNCCCCCTTGTCT] [-] EMBL BI801587 [ tTTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCGGGTCATAATATGTACAAGGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCAGTGGTTTTCTGTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATGGGGGAGAGATAGAGAGAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12521#0 -CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTG 59 consensus_12521#1 TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTG 60 ***** * **************************** ****************** consensus_12521#0 GTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACG 119 consensus_12521#1 GTCATAATATGTACAATGGAT-GGATTATTGCTACTAATAAG------------TGAACG 107 ********************* ************** **** ****** consensus_12521#0 ATGGAGGATG-AGGAGGAGATCCAAGATCA---TCCCCTTGATTCCTCCATGGTTTTCTT 175 consensus_12521#1 ATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCATGGTTTTCTT 167 ********** ***** ************* ******* * ***************** consensus_12521#0 GGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACA---GATTGGGG 232 consensus_12521#1 GGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGG 227 ************************************************* ******** consensus_12521#0 AGAGATAGAGAGAGGAGAGGAGCTTCACA----------AACTCACCACTAGCTTCCTCT 282 consensus_12521#1 AGAGATAGAGAGAGGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCT 287 ***************************** ********** ********** consensus_12521#0 CCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAG 342 consensus_12521#1 CCT---CTTCTCCTTGTGATTCTTT-CTTGGGCACATACTACTGTTCTAGTAGAGTAGAG 343 *** ******************* **** ***************************** consensus_12521#0 TAG-----TATTTGGTTGTGTGT-AGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCA 396 consensus_12521#1 TAGAGTAGTATTTGGTTGTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCA 403 *** *********** ** ************************************ consensus_12521#0 GATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATC---- 452 consensus_12521#1 GAACGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGAT 463 ** ***************************************************** consensus_12521#0 -AGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACC 511 consensus_12521#1 CAGATGCGGACGGCGGCAACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACC 523 **************** ***** ******************************** *** consensus_12521#0 ACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCG 571 consensus_12521#1 ACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCG 583 ************************************************************ consensus_12521#0 TCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCG 631 consensus_12521#1 NCCCCCTTGTCT------------------------------------------------ 595 * * ** consensus_12521#0 CGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTCGCGCCACCCGCCGCGC 691 consensus_12521#1 ------------------------------------------------------------ consensus_12521#0 GAGCCGAGCCTCTCCATCACGGCGGCGC 719 consensus_12521#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||