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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2128 fasta sequence
[CCTCCCCGCGCCGCCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAG-TGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTAGACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTATATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAGAGGCTATAGATTAGTATTTAAAACCGGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTATGATTGTATCCTTGTATGCCACCAATCAGTTGAAGTCAAATATGTATTTGTTCGGTA]
[+] EMBL AK072399 [CCTCCCCGCGCCGCCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAG TGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTAGACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTATATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAGAGGCTATAGATTAGTATTTAAAACCGGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTATGATTGTATCCTTGTATGCCACCAATCAGTTGAAGTCAAATATGTATTTGTTCGGTA]
[+] EMBL CB657774 [ CCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAAGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGGTTCTTCAAGATTGCC ]
[+] EMBL CB648072 [ TTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGANATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTANTATTATTGCACATGAATTCTA ]
[+] EMBL CA756496 [ AGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCnnagc ]
[+] EMBL CB649662 [ ATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAn ]
[-] EMBL CB649663 [ GCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGCTGTGTACTG ]
[-] EMBL CB648073 [ CAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAG TGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTga ]
consensusID : consensus_12523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence
[TTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCACCCTTTTTTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCACCCTTGAGATCCAAAAAAAAAAAAGA]
[-] EMBL CB657775 [TTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCACCCTTTTTTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCACCCTTGAGATCCAAAAAAAAAAAAGA]
consensusID : consensus_12523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[GGTTCAACCCGGATGTTGAGTGCCTTTATGTGGAGTTTGCATCAAATTCAGACACCTCCCGNTAAGGAAGCTTCAGATGGATATTTCTGTTCATGGGCCCAGGACTCCATCCCCGTTCTTGGGCTCTCTGTGGGATAAACTTCCGTGTGGAAGCCCTGCTCCCAAACTGTCGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCCTTCTGGGAAGGTCCTGACTGACCCAACCCCCATTGGCACTGGGTACTAGGTACTTGGCCCTGGCCCTTGTCCACCAGAAGCACAGGCACACCCGTTCCACTTCGAGTATAAAGAAATACTGGAACCGTTGTCTCCTCTCCTCAGGTAAAATAACATCACCTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGAACGATTCTTGTCNACCTTTTCTAATGCACACCACTACCTGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTAAAAAAAAAA]
[+] EMBL BM421304 [GGTTCAACCCGGATGTTGAGTGCCTTTATGTGGAGTTTGCATCAAATTCAGACACCTCCCGNTAAGGAAGCTTCAGATGGATATTTCTGTTCATGGGCCCAGGACTCCATCCCCGTTCTTGGGCTCTCTGTGGGATAAACTTCCGTGTGGAAGCCCTGCTCCCAAACTGTCGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCCTTCTGGGAAGGTCCTGACTGACCCAACCCCCATTGGCACTGGGTACTAGGTACTTGGCCCTGGCCCTTGTCCACCAGAAGCACAGGCACACCCGTTCCACTTCGAGTATAAAGAAATACTGGAACCGTTGTCTCCTCTCCTCAGGTAAAATAACATCACCTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGAACGATTCTTGTCNACCTTTTCTAATGCACACCACTACCTGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTAAAAAAAAAA]
consensusID : consensus_12523#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[ATCCGGGGCATTTCATCACCTCGCCGGACGTCAGCCAAATGTTTGGACACATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCACCCACACAAACTCAATCTGATTGAGCTTGGTCCATGGCGCGGAACTCTCTTGGCACATTTACTTCGTTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACCTGGCTGGTGCCACAACATCGTCCATCTTGCACAAACTCATCCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGTTGGGCTAGTTCTGAGGAACTTTGAAAAAATTTCAACATATTGAAATTCTCCCCAAAGCAATGGAAATCCTTGAACCCATTNCCCATNCAATTNC]
[+] EMBL AA754073 [ATCCGGGGCATTTCATCACCTCGCCGGACGTCAGCCAAATGTTTGGACACATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCACCCACACAAACTCAATCTGATTGAGCTTGGTCCATGGCGCGGAACTCTCTTGGCACATTTACTTCGTTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACCTGGCTGGTGCCACAACATCGTCCATCTTGCACAAACTCATCCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGTTGGGCTAGTTCTGAGGAACTTTGAAAAAATTTCAACATATTGAAATTCTCCCCAAAGCAATGGAAATCCTTGAACCCATTNCCCATNCAATTNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CCTCCCCGCGCCGCCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTC 60
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGA 120
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCC 180
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAAC 240
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTG 300
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTC 360
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 AAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTG 420
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGAT 480
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATG 540
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGG 600
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAA 660
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 GCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACT 720
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGA 780
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 GCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATT 840
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 ATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGC 900
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCA 960
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAA 1020
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 -------------------TTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATT 41
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 CTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATT 1080
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 GCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGA 101
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 GCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGA 1140
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAAC 161
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 ATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAAC 1200
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 CCTGGTTCAGCC--GAT-CTGAGTGC--TTATGTTGATTTTGCATCAA--TCAGACACT- 213
consensus_12523#2 ---GGTTCAACCCGGATGTTGAGTGCCTTTATGTGGAGTTTGCATCAAATTCAGACACCT 57
consensus_12523#0 CCTGGTTCAGCC--GAT-CTGAGTGC--TTATGTTGATTTTGCATCAA--TCAGACACT- 1252
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 -CCGCTAAGGAAGCTTCAGATG-ATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTT 271
consensus_12523#2 CCCGNTAAGGAAGCTTCAGATGGATATTTCTGTTCATGGGCCCAGGACTCCATCCCCGTT 117
consensus_12523#0 -CCGCTAAGGAAGCTTCAGATG-ATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTT 1310
consensus_12523#3 ---------------------------------------ATCCGGGGCATTTCATCACCT 21
* * * * *
consensus_12523#1 CTTGGGCTCTCT-TGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGT-GCTACT 329
consensus_12523#2 CTTGGGCTCTCTGTGGGATAAACTTCCGTGTGGAAGCCCTGCTCCCAAACTGTCGCTACT 177
consensus_12523#0 CTTGGGCTCTCT-TGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGT-GCTACT 1368
consensus_12523#3 CGCCGGACGTCAGCCAAATGTTTGGACACATGACTGGTGTGTGGGCAATGTGCCTCTGGG 81
* ** ** ** * ** * ** ** ** **
consensus_12523#1 GATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCC 389
consensus_12523#2 GATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCC 237
consensus_12523#0 GATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCC 1428
consensus_12523#3 AGCAAATGGGGCACCCACACAAACTCAATCTGATTGAGCTTGGTCC---ATGGCGCGGAA 138
* ** * * ** ** * * * * *** **** * *
consensus_12523#1 CCATTCTGGGAAGGTCCTGAC-GACCAAACCCCAATTG--GCA--TGGGTACTA-GGTAC 443
consensus_12523#2 CCCTTCTGGGAAGGTCCTGACTGACCCAACCCCCATTG--GCAC-TGGGTACTA-GGTAC 293
consensus_12523#0 CCATTCTGGGAAGGTCCTGAC-GACCAAACCCCAATTG--GCA--TGGGTACTA-GGTAC 1482
consensus_12523#3 CTCTCTTGGCACATTTACTTCGTTGCCAACTATAATTATTGCACATGAATTCTATGATGC 198
* * *** * * * * *** *** *** ** * *** * * *
consensus_12523#1 TTGGCCATGGCCATTGTCAACAAGAAGCA-AGGCACACCCGTTCCA-TTCGAGTA-AAAG 500
consensus_12523#2 TTGGCCCTGGCCCTTGTCCACCAGAAGCACAGGCACACCCGTTCCACTTCGAGTATAAAG 353
consensus_12523#0 TTGGCCATGGCCATTGTCAACAAGAAGCA-AGGCACACCCGTTCCA-TTCGAGTA-AAAG 1539
consensus_12523#3 CTTGCCA-ATTCATCAATTTCAGAAAGCA-----TCACCTGGCTGG-TGCCACAACATCG 251
* *** * * * ***** **** * * * * * * *
consensus_12523#1 AAATACTGGAACCGTT-TCTCCTCTCCTCAGGTAAAATAACATCAC-TGCCGTGTAACTC 558
consensus_12523#2 AAATACTGGAACCGTTGTCTCCTCTCCTCAGGTAAAATAACATCACCTGCCGTGTAACTC 413
consensus_12523#0 AAATACTGGAACCGTT-TCTCCTCTCCTCAGGTAAAATAACATCAC-TGCCGTGTAACTC 1597
consensus_12523#3 TCCATCTTGCACAAAC---TCATCCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGG--- 305
** * ** ** ** * *** ** * * * ** *
consensus_12523#1 TTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCA 618
consensus_12523#2 TTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGAACGATTCTTGTCN 473
consensus_12523#0 TTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCA 1657
consensus_12523#3 -TGCGTTG--GGCTAGTTCTG-----AGGAACTTTGAAAAAATTTCAACA--TATTGAAA 355
* * ** * * ***** ** * * * * ** ** * ***
consensus_12523#1 CCCTTTTTTAATGCACACCA-TACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAA 677
consensus_12523#2 ACCTTTTCTAATGCACACCACTACCTGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAA 533
consensus_12523#0 ACCTTTTCTAATGCACACCA-TACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAA 1716
consensus_12523#3 TTCTCCCCAAAGCAATGGAAATCCTTGAACCCATTN---CCCATNCAATTNC-------- 404
** ** * * * * ** ** * ** * * * **
consensus_12523#1 GAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGT 737
consensus_12523#2 GAAGTGTGTACTGCTTTGTA--------AAAAAAAAA----------------------- 562
consensus_12523#0 GAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGT 1776
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 TACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAA 797
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAA 1836
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 TTCCTGAATTTCTACTAGTGTTCACCCTTGAGATCCAAAAAAAAAAAAGA---------- 847
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGC 1896
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 GGAGTCAGCTGTTTAGACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTA 1956
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 TATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAGAGGCTATAGATTAGTATTTAAAACC 2016
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ------------------------------------------------------------
consensus_12523#2 ------------------------------------------------------------
consensus_12523#0 GGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTATGATT 2076
consensus_12523#3 ------------------------------------------------------------
consensus_12523#1 ----------------------------------------------------
consensus_12523#2 ----------------------------------------------------
consensus_12523#0 GTATCCTTGTATGCCACCAATCAGTTGAAGTCAAATATGTATTTGTTCGGTA 2128
consensus_12523#3 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||