These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2128 fasta sequence [CCTCCCCGCGCCGCCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAG-TGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTAGACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTATATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAGAGGCTATAGATTAGTATTTAAAACCGGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTATGATTGTATCCTTGTATGCCACCAATCAGTTGAAGTCAAATATGTATTTGTTCGGTA] [+] EMBL AK072399 [CCTCCCCGCGCCGCCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAG TGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTAGACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTATATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAGAGGCTATAGATTAGTATTTAAAACCGGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTATGATTGTATCCTTGTATGCCACCAATCAGTTGAAGTCAAATATGTATTTGTTCGGTA] [+] EMBL CB657774 [ CCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAAGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGGTTCTTCAAGATTGCC ] [+] EMBL CB648072 [ TTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTCCTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGATTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCCCCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAACCGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTGTACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTCAAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGANATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTANTATTATTGCACATGAATTCTA ] [+] EMBL CA756496 [ AGCGTAGCCGAGTACATGGAGGAGGTGCTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGATTTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCnnagc ] [+] EMBL CB649662 [ ATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGAGCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGCTGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCACAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAn ] [-] EMBL CB649663 [ GCGGTGCGGTTGGGCTAGTTCTGAGGAACTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGCTGTGTACTG ] [-] EMBL CB648073 [ CAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCAACCTTTTCTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAG TGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGCGGAGTCAGCTGTTTga ] consensusID : consensus_12523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence [TTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCACCCTTTTTTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCACCCTTGAGATCCAAAAAAAAAAAAGA] [-] EMBL CB657775 [TTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATTGCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGAATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCATTCTGGGAAGGTCCTGACGACCAAACCCCAATTGGCATGGGTACTAGGTACTTGGCCATGGCCATTGTCAACAAGAAGCAAGGCACACCCGTTCCATTCGAGTAAAAGAAATACTGGAACCGTTTCTCCTCTCCTCAGGTAAAATAACATCACTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCACCCTTTTTTAATGCACACCATACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGTTACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAATTCCTGAATTTCTACTAGTGTTCACCCTTGAGATCCAAAAAAAAAAAAGA] consensusID : consensus_12523#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [GGTTCAACCCGGATGTTGAGTGCCTTTATGTGGAGTTTGCATCAAATTCAGACACCTCCCGNTAAGGAAGCTTCAGATGGATATTTCTGTTCATGGGCCCAGGACTCCATCCCCGTTCTTGGGCTCTCTGTGGGATAAACTTCCGTGTGGAAGCCCTGCTCCCAAACTGTCGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCCTTCTGGGAAGGTCCTGACTGACCCAACCCCCATTGGCACTGGGTACTAGGTACTTGGCCCTGGCCCTTGTCCACCAGAAGCACAGGCACACCCGTTCCACTTCGAGTATAAAGAAATACTGGAACCGTTGTCTCCTCTCCTCAGGTAAAATAACATCACCTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGAACGATTCTTGTCNACCTTTTCTAATGCACACCACTACCTGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTAAAAAAAAAA] [+] EMBL BM421304 [GGTTCAACCCGGATGTTGAGTGCCTTTATGTGGAGTTTGCATCAAATTCAGACACCTCCCGNTAAGGAAGCTTCAGATGGATATTTCTGTTCATGGGCCCAGGACTCCATCCCCGTTCTTGGGCTCTCTGTGGGATAAACTTCCGTGTGGAAGCCCTGCTCCCAAACTGTCGCTACTGATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCCCCCTTCTGGGAAGGTCCTGACTGACCCAACCCCCATTGGCACTGGGTACTAGGTACTTGGCCCTGGCCCTTGTCCACCAGAAGCACAGGCACACCCGTTCCACTTCGAGTATAAAGAAATACTGGAACCGTTGTCTCCTCTCCTCAGGTAAAATAACATCACCTGCCGTGTAACTCTTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGAACGATTCTTGTCNACCTTTTCTAATGCACACCACTACCTGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAAGAAGTGTGTACTGCTTTGTAAAAAAAAAA] consensusID : consensus_12523#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [ATCCGGGGCATTTCATCACCTCGCCGGACGTCAGCCAAATGTTTGGACACATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCACCCACACAAACTCAATCTGATTGAGCTTGGTCCATGGCGCGGAACTCTCTTGGCACATTTACTTCGTTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACCTGGCTGGTGCCACAACATCGTCCATCTTGCACAAACTCATCCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGTTGGGCTAGTTCTGAGGAACTTTGAAAAAATTTCAACATATTGAAATTCTCCCCAAAGCAATGGAAATCCTTGAACCCATTNCCCATNCAATTNC] [+] EMBL AA754073 [ATCCGGGGCATTTCATCACCTCGCCGGACGTCAGCCAAATGTTTGGACACATGACTGGTGTGTGGGCAATGTGCCTCTGGGAGCAAATGGGGCACCCACACAAACTCAATCTGATTGAGCTTGGTCCATGGCGCGGAACTCTCTTGGCACATTTACTTCGTTGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACCTGGCTGGTGCCACAACATCGTCCATCTTGCACAAACTCATCCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGTTGGGCTAGTTCTGAGGAACTTTGAAAAAATTTCAACATATTGAAATTCTCCCCAAAGCAATGGAAATCCTTGAACCCATTNCCCATNCAATTNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CCTCCCCGCGCCGCCGTCGAGATGTTTCGGAGCCCGGCCGCCGCCGCCGCCTCCGCCCTC 60 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CTCCGCCGCCTAGGCCCCCGCGTATCCGGCGGTGGAGGCGGCGCTTCCACTCACCGGCGA 120 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TTCGCGCCTCCGGTATCCACCTCCATCCTCTCCCGCTACTCCTCCGCGCCGACGTCCTCC 180 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CCTTCGCCGCCGCCACCGCCACCCCCACCGCCCTCCGACGCCGCGGCGGATGGGGATAAC 240 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CGAGCGGAATCGGGGGAACCCGGCTCCAGTCTCAGCATCACCATCGACCGCTCCGGCCTG 300 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TACAATCCCCCAGAGCACTCGCACGAGCCGTCGTCGGATTCCGAGCTAGTGAAGCACCTC 360 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 AAGAGCATCATAAAGTTCCGCAGCGGGCCTATCAGCGTAGCCGAGTACATGGAGGAGGTG 420 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CTGACGAACCCGCAGTCAGGGTTCTACATCAACCGCGACGTGTTCGGGACATCCGGGGAT 480 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TTCATCACCTCGCCGGAGGTCAGCCAAATGTTTGGAGAGATGACTGGTGTGTGGGCAATG 540 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGG 600 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CGCGGAACTCTCTTGGCAGATTTACTTCGTGGGTCATCAAAATTTGTTAATTTCACCAAA 660 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 GCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACT 720 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CTGAAATGTGAAGATGAGCCCATTGGCGATAAAACAAGGACAGTTAGCAAGCTTTGTGGA 780 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 GCCCCTGTACACTGGCATGCTTCCCTTGAACAGGTTCCTTCAGGATTGCCAACTATAATT 840 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 ATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGAAAGCATCACGTGGC 900 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TGGTGCGAGAAGATGGTGGATCTTGCAGAAGACTCATCGTTTCGCTTTGTTCTATCTCCA 960 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CAGCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGGTGCGGTTGGGCTAGTTCTGAGGAA 1020 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 -------------------TTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATT 41 consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 CTTGAGAAAGTTGAGCATATTGAAGTCTGCCCGAAAGCAATGGAGATCACTGAACAGATT 1080 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 GCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGA 101 consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 GCAGATAGAATTAGCTCGGATGGAGGGGGTGCACTTATCATTGACTACGGAAAAGATGGA 1140 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAAC 161 consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 ATAGTCTCTGATAGTCTTCAGGCAATCCGCAAGCACAAGTTTGTACACATATTGGATAAC 1200 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 CCTGGTTCAGCC--GAT-CTGAGTGC--TTATGTTGATTTTGCATCAA--TCAGACACT- 213 consensus_12523#2 ---GGTTCAACCCGGATGTTGAGTGCCTTTATGTGGAGTTTGCATCAAATTCAGACACCT 57 consensus_12523#0 CCTGGTTCAGCC--GAT-CTGAGTGC--TTATGTTGATTTTGCATCAA--TCAGACACT- 1252 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 -CCGCTAAGGAAGCTTCAGATG-ATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTT 271 consensus_12523#2 CCCGNTAAGGAAGCTTCAGATGGATATTTCTGTTCATGGGCCCAGGACTCCATCCCCGTT 117 consensus_12523#0 -CCGCTAAGGAAGCTTCAGATG-ATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTT 1310 consensus_12523#3 ---------------------------------------ATCCGGGGCATTTCATCACCT 21 * * * * * consensus_12523#1 CTTGGGCTCTCT-TGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGT-GCTACT 329 consensus_12523#2 CTTGGGCTCTCTGTGGGATAAACTTCCGTGTGGAAGCCCTGCTCCCAAACTGTCGCTACT 177 consensus_12523#0 CTTGGGCTCTCT-TGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGT-GCTACT 1368 consensus_12523#3 CGCCGGACGTCAGCCAAATGTTTGGACACATGACTGGTGTGTGGGCAATGTGCCTCTGGG 81 * ** ** ** * ** * ** ** ** ** consensus_12523#1 GATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCC 389 consensus_12523#2 GATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCC 237 consensus_12523#0 GATGAGCAGGCCGAGTCTCTGAGGACAGGCTACTGGCGTCTTGTCGGAGATGGTGAAGCC 1428 consensus_12523#3 AGCAAATGGGGCACCCACACAAACTCAATCTGATTGAGCTTGGTCC---ATGGCGCGGAA 138 * ** * * ** ** * * * * *** **** * * consensus_12523#1 CCATTCTGGGAAGGTCCTGAC-GACCAAACCCCAATTG--GCA--TGGGTACTA-GGTAC 443 consensus_12523#2 CCCTTCTGGGAAGGTCCTGACTGACCCAACCCCCATTG--GCAC-TGGGTACTA-GGTAC 293 consensus_12523#0 CCATTCTGGGAAGGTCCTGAC-GACCAAACCCCAATTG--GCA--TGGGTACTA-GGTAC 1482 consensus_12523#3 CTCTCTTGGCACATTTACTTCGTTGCCAACTATAATTATTGCACATGAATTCTATGATGC 198 * * *** * * * * *** *** *** ** * *** * * * consensus_12523#1 TTGGCCATGGCCATTGTCAACAAGAAGCA-AGGCACACCCGTTCCA-TTCGAGTA-AAAG 500 consensus_12523#2 TTGGCCCTGGCCCTTGTCCACCAGAAGCACAGGCACACCCGTTCCACTTCGAGTATAAAG 353 consensus_12523#0 TTGGCCATGGCCATTGTCAACAAGAAGCA-AGGCACACCCGTTCCA-TTCGAGTA-AAAG 1539 consensus_12523#3 CTTGCCA-ATTCATCAATTTCAGAAAGCA-----TCACCTGGCTGG-TGCCACAACATCG 251 * *** * * * ***** **** * * * * * * * consensus_12523#1 AAATACTGGAACCGTT-TCTCCTCTCCTCAGGTAAAATAACATCAC-TGCCGTGTAACTC 558 consensus_12523#2 AAATACTGGAACCGTTGTCTCCTCTCCTCAGGTAAAATAACATCACCTGCCGTGTAACTC 413 consensus_12523#0 AAATACTGGAACCGTT-TCTCCTCTCCTCAGGTAAAATAACATCAC-TGCCGTGTAACTC 1597 consensus_12523#3 TCCATCTTGCACAAAC---TCATCCCTACAGCCTCTTTACTTTTCCTTTCCAAGCGG--- 305 ** * ** ** ** * *** ** * * * ** * consensus_12523#1 TTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCA 618 consensus_12523#2 TTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGAACGATTCTTGTCN 473 consensus_12523#0 TTATGCTGCTGATGAATTCTGCCGGCGGGCAGTCCAGATAGATAAGGACGATTCTTGTCA 1657 consensus_12523#3 -TGCGTTG--GGCTAGTTCTG-----AGGAACTTTGAAAAAATTTCAACA--TATTGAAA 355 * * ** * * ***** ** * * * * ** ** * *** consensus_12523#1 CCCTTTTTTAATGCACACCA-TACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAA 677 consensus_12523#2 ACCTTTTCTAATGCACACCACTACCTGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAA 533 consensus_12523#0 ACCTTTTCTAATGCACACCA-TACATGGACTCGTTCAGATGCGTGCTGTTTTTTTTATAA 1716 consensus_12523#3 TTCTCCCCAAAGCAATGGAAATCCTTGAACCCATTN---CCCATNCAATTNC-------- 404 ** ** * * * * ** ** * ** * * * ** consensus_12523#1 GAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGT 737 consensus_12523#2 GAAGTGTGTACTGCTTTGTA--------AAAAAAAAA----------------------- 562 consensus_12523#0 GAAGTGTGTACTGCTTTGTACTTGCTGCACGGAAAGAATTGGTCGGTTTGACATTCCTGT 1776 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 TACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAA 797 consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TACTACATAGGTTTCTTCGTGCAAGATGGGATAGTGGTTGTATCAAAGTTTCTGGTACAA 1836 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 TTCCTGAATTTCTACTAGTGTTCACCCTTGAGATCCAAAAAAAAAAAAGA---------- 847 consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TTCCTGAATTTCTACTAGTGTTCAACCTTGAGATACAAGTTATGCACATTGTTTAGCTGC 1896 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 GGAGTCAGCTGTTTAGACCTTGAGATGTCATGCATTACGCATTTGTGCCTCTGTTTGGTA 1956 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 TATGTGTTCCAGTTCACTGCTTCTAAAGTCTAAAGAGGCTATAGATTAGTATTTAAAACC 2016 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ------------------------------------------------------------ consensus_12523#2 ------------------------------------------------------------ consensus_12523#0 GGTTTACCCGTTTCAAAAGCATGCTTATCTTATGTCATTCGTGCAAAGCCTTGTATGATT 2076 consensus_12523#3 ------------------------------------------------------------ consensus_12523#1 ---------------------------------------------------- consensus_12523#2 ---------------------------------------------------- consensus_12523#0 GTATCCTTGTATGCCACCAATCAGTTGAAGTCAAATATGTATTTGTTCGGTA 2128 consensus_12523#3 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||