cluster # 12525

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Oryza sativa
cluster # 12525 cluster # 12525 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12525#0 length = 1926 sequences # 8

consensus_12525#1 length = 776 sequences # 1
consensus_12525#2 length = 560 sequences # 1

consensusID : consensus_12525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1926
fasta sequence

                              [AGATCCACAAACTCACTCTACTTGCACCACATGATACTTATCACAATTCACACATCGTACCAAACATTCTCAAGTGCACCAAGACAAGCTTTGTACAATAGCAGCAGCAGCAGCAGAGATCAGTGATTAGGCTTTAAATCACTGATCAAGATGAGTGGCGCAACGGCGGACTGGGCATGGTGGCTCGGCCTCGTCGCCGGCGCCGTCCCGCTGCTCGCCCTCGCCGTCTGGCAC-TGCACCGACGCCTTCCACAGCGCCGCCTTCGCGTTCCGCCGCCGC-GGGACACGCGCGAGGCTCCCCCCGGGCCACAT-GGGCCTGCCGTTCGTCGGCGAGACCCTCGCCCTGATCTGGTACTTCAACCTCGCCCGCCGCCCCGACGCCTTCATCGAGGCCAAGAGGCGGCGCTACTGCTACGGCGACGGCGACGACGACGGCGGCATCTACCGGACGCACCTGTTCGGCTCGCCCGCGGTGCTCGTCTGCTCGCCGGCGTCCAACGGGTTCGTGTTCCGGTCGGCGCCGCCCGGCAGCTTCGGCGTCGGGTGGCCGGTGCCGGAGCTCGTCGGCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGGCACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACCATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGCACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGA-GTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCCATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTCAGAGATGTTGAGTACCGAGGGTATACAATCCCAAAAGGGT-GGAAAGTTATTGTGTGGATCCGATCACTACATGTC-GACCCAGCATACTACGACAATCCGTTAAGTTTCAA-CCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCCAACAGATGGGGCA-GTGATGTCCTTCAGTGAACTCTGATGGCAGCTATATCATTCAGACATAGAATAAAGTCACCAGTACA-TTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGCTAGGTGCAAGACTGA-TTAAGAAAAAGCTGAGAAGCAACAATGCATGATATGTATCACACCAAG-CTGAGTTTC-TTTAAATGTGTTA-TTCAGTTGTTGTTCCAGATGTTTTGTATATACGTAAATAAACTCTACCAAGAATTTCTGTCTATTAATAAATTGTGAGCTTTTGTGAGTTGAAAAAAAAAA]

[+] EMBL C91663               [AGATCCACAAACTCACTCTACTTGCACCACATGATACTTATCACAATTCACACATCGTACCAAACATTCTCAAGTGCACCAAGACAAGCTTTGTACAATAGCAGCAGCAGCAGCAGAGATCAGTGATTAGGCTTTAAATCACTGATCAAGATGAGTGGCGCAACGGCGGACTGGGCATGGTGGCTCGGCCTCGTCGCCGGCGCCGTCCCGCTGCTCGCCCTCGCCGTCTGGCACTTGCACCGACGCCTTCCACAGCGCCGCCTTCGCGTTCCGCCGCCGCGGGGACACGCGCGAAGCTTCNCCCGGGCCANATGGGGCCTNCCGTTCGTCGGCGAAACCCTCGCCCTGATCTGGTACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK120986             [                                                                               CAAGACAAGCTTTGTACAATAGCAGCAGCAGCAGCAGAGATCAGTGATTAGGCTTTAAATCACTGATCAAGATGAGTGGCGCAACGGCGGACTGGGCATGGTGGCTCGGCCTCGTCGCCGGCGCCGTCCCGCTGCTCGCCCTCGCCGTCTGGCAC TGCACCGACGCCTTCCACAGCGCCGCCTTCGCGTTCCGCCGCCGC GGGACACGCGCGAGGCTCCCCCCGGGCCACAT GGGCCTGCCGTTCGTCGGCGAGACCCTCGCCCTGATCTGGTACTTCAACCTCGCCCGCCGCCCCGACGCCTTCATCGAGGCCAAGAGGCGGCGCTACTGCTACGGCGACGGCGACGACGACGGCGGCATCTACCGGACGCACCTGTTCGGCTCGCCCGCGGTGCTCGTCTGCTCGCCGGCGTCCAACGGGTTCGTGTTCCGGTCGGCGCCGCCCGGCAGCTTCGGCGTCGGGTGGCCGGTGCCGGAGCTCGTCGGCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGGCACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACCATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGCACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGA GTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCCATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTCAGAGATGTTGAGTACCGAGGGTATACAATCCCAAAAGGGT GGAAAGTTATTGTGTGGATCCGATCACTACATGTC GACCCAGCATACTACGACAATCCGTTAAGTTTCAA CCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCCAACAGATGGGGCA GTGATGTCCTTCAGTGAACTCTGATGGCAGCTATATCATTCAGACATAGAATAAAGTCACCAGTACA TTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGCTAGGTGCAAGACTGA TTAAGAAAAAGCTGAGAAGCAACAATGCATGATATGTATCACACCAAG CTGAGTTTC TTTAAATGTGTTA TTCAGTTGTTGTTCCACATGTTTTGTATATACGTAAATAAACTCTACCAAGAATTCCTGTCTATTAATAAATTGTG                         ]
[+] EMBL CB654679             [                                                                                                                                                                              GCATGGCGGCTCGGCCTCGTCGCCGGCGCCGTCCCGCTGCTCGCCCTCGCCGTCTGGCAC TGCACCGACGCCTTCCACAGCGCCGCCTTCGCGTTCCGCCGCCGC GGGACACGCGCGAGGCTCCCCCCGGGCCACAT GGGCCTGCCGTTCGTCGGCGAGACCCTCGCCCTGATCTGGTACTTCAACCTCGCCCGCCGCCCCGACGCCTTCATCGAGGCCAAGAGGCGGCGCTACTGCTACGGCGACGGCGACGACGACGGCGGCATCTACCGGACGCACCTGTTCGGCTCGCCCGCGGTGCTCGTCTGCTCGCCGGCGTCCAACGGGTTCGTGTTCCGGTCGGCGCCGCCCGGCAGCTTCGGCGTCGGGTGGCCGGTGCCGGAGCTCGTCGGCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGGCACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACCATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGCACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCATGTCGTTACCACTGGACATGCCATGAACAGCGCTCCACCACGCTCGAAAGTGCCGGAGAAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB654680             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGA GTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCCATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTCAGAGATGTTGAGTACCGAGGGTATACAATCCCAAAAGGGT GGAAAGTTATTGTGTGGATCCGATCACTACATGTC GACCCAGCATACTACGACAATCCGTTAAGTTTCAA CCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCCAACAGATGGGGCA GTGATGTCCTTCAGTGAACTCTGATGGCAGCTATATCATTCAGACATAGAATAAAGTCACCAGTACA TTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGCTAGGTGCAAGACTGATTTTAAAGAGGGCTGAGAAGCAACAATG                                                                                                                                                   ]
[+] EMBL CA765710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ggggtnTCGCGGGCTATGA GT AACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCTATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTCAGAGATGTTGAATACCGAGGGTGTACAATACCAAAAGGGT GGAAAGTTATTGTGTGGATCCGATCACTACATGTC GACCCAGCACACTACGACAATCCGTTAAGTTTCAA CCCGGATAGATGGGATAAATCAGCGGAGCCAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCCAACAGATGGGGCAGGTGATGTCCTTCAGTGAACTCTGATGGCAGCTATATCATTCAGACATAGAATAAAGTCACCAGTACATTTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGCTAGGTGCAAGACTGA TTAAGAAAAAGCTGAGAAGCAACAATGCATGATATGTATCACACCAAGCCTGAGNTTCTTTTAAATGNGTTATTTNAGTTGGTGTTCCANATGGTTTGGNTATACGTAAATAAACTCTACC                                                     ]
[+] EMBL C73729               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gncntatTGANGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCCATAG CAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGATACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTCAGAGATGTTGAGTACCGAGGGTATACAATCCCAAAAGGGTGGGAAAGTTATTGTGTGGTTCCGNTCACTACATGTCGGACCCAGCATACTACGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB620880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTCAGAGATGTTGAATACCGAGGGTATACAATACCAAAAGGGT GGAAAGTTATTGTGTGGATCCGATCACTACATGTC GGCCCAGCACACTACGACAATCCGTTAAGTTTCAA CCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATTTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCCCCCAAGGCCAACAGATGGGGCA GTGATGTCCTTCAGTGAACTCTGATGGCAGGTATATCATTCAGACATAGAATAAAGTCACCAGTACA TTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGCTAGGTGCAAGACTGA TTAAGAAAAAGCTGAGAAGCAACAATGCATGATATGTATCACCCCAAG CTGAGTTTC TTTAAATGTGTTA TTCAGTTGTTGTTCCAGATGTTTTGTATATACGTAAATAAACTCTACCAAGAATTTCTGTTTAAGGGGAAATTGTGAGCTTTTGTG               ]
[+] EMBL BM419164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGTTTCAACCCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGT GCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCC ACAGATGGGGCA GTGATGTCCTTCAGTGAACTCTGATGGCAGCTATATCATTCAGACATAGAATAAAGTCACCAGTACA TTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGCTAGGTGCAAGACTGA TTAAGAAAAAGCTGAGAAGCAAC ATGCATGATATGTATCACACCAAG CTGAGTTTC TTTAAATGTGTTA TTCAGTTGTTGTTCCAGATGTTTTGTATATACGTAAATAAACTCTACCAAGAATTTCTGTCTATTAATAAATTGTGAGCTTTTGTGAGTTGAAAAAAAAAA]




>consensus_12525#0
AGATCCACAAACTCACTCTACTTGCACCACATGATACTTATCACAATTCACACATCGTAC
CAAACATTCTCAAGTGCACCAAGACAAGCTTTGTACAATAGCAGCAGCAGCAGCAGAGAT
CAGTGATTAGGCTTTAAATCACTGATCAAGATGAGTGGCGCAACGGCGGACTGGGCATGG
TGGCTCGGCCTCGTCGCCGGCGCCGTCCCGCTGCTCGCCCTCGCCGTCTGGCACTGCACC
GACGCCTTCCACAGCGCCGCCTTCGCGTTCCGCCGCCGCGGGACACGCGCGAGGCTCCCC
CCGGGCCACATGGGCCTGCCGTTCGTCGGCGAGACCCTCGCCCTGATCTGGTACTTCAAC
CTCGCCCGCCGCCCCGACGCCTTCATCGAGGCCAAGAGGCGGCGCTACTGCTACGGCGAC
GGCGACGACGACGGCGGCATCTACCGGACGCACCTGTTCGGCTCGCCCGCGGTGCTCGTC
TGCTCGCCGGCGTCCAACGGGTTCGTGTTCCGGTCGGCGCCGCCCGGCAGCTTCGGCGTC
GGGTGGCCGGTGCCGGAGCTCGTCGGCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGG
CACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACC
ATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGC
ACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTC
GTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTT
GCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAG
TGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATG
GTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATGAGCGGGCTGATGCAC
GTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCC
CTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTC
GCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCCATAGCCAAAGAG
AAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAG
GTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGATGGCTCACCGCGTGGCACTC
AGAGATGTTGAGTACCGAGGGTATACAATCCCAAAAGGGTGGAAAGTTATTGTGTGGATC
CGATCACTACATGTCGACCCAGCATACTACGACAATCCGTTAAGTTTCAACCCGGATAGA
TGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGTGGCGGCGAGAGGATCTGC
GCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTCCATCATCTCTCTTGTGGT
TACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTACCTTCCGCACCCAAGGCCA
ACAGATGGGGCAGTGATGTCCTTCAGTGAACTCTGATGGCAGCTATATCATTCAGACATA
GAATAAAGTCACCAGTACATTCTGTGGCTTAAGAACTTCAGAGTTCATATATACTATTGC
TAGGTGCAAGACTGATTAAGAAAAAGCTGAGAAGCAACAATGCATGATATGTATCACACC
AAGCTGAGTTTCTTTAAATGTGTTATTCAGTTGTTGTTCCAGATGTTTTGTATATACGTA
AATAAACTCTACCAAGAATTTCTGTCTATTAATAAATTGTGAGCTTTTGTGAGTTGAAAA
AAAAAA

consensusID : consensus_12525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence

                              [GCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGGCACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACCATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGCACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGGTGATCTCTTTTGATGTTCCCTTTTCTCTCTTTGCTTGGATTTCCTATGCCGGCACACATCTGCACACCATGCAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCTATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAA]

[+] EMBL CB620879             [GCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGGCACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACCATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGCACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGGTGATCTCTTTTGATGTTCCCTTTTCTCTCTTTGCTTGGATTTCCTATGCCGGCACACATCTGCACACCATGCAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTGGCTATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAA]




>consensus_12525#1
GCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGGCACGCCAGGCTGCGCAGGTTCGTCC
TCGGCGCCATCAACAGGCCGGGCTCACTCCGGACCATCGCGCGGGTGGCGCAGCCGCGCG
TGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGCACCATCACCGCCGCCACCGAGATGA
AGAATGTGACGTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAA
CCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGG
ACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGGTGATCTCTTTTGATGTTCCCTTTT
CTCTCTTTGCTTGGATTTCCTATGCCGGCACACATCTGCACACCATGCAGTGCCGGAGAA
AGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAG
AAGGAGGCGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAG
GTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCT
ATGAGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTG
CCCTTGCCAAGCTAAGAGAGGAAAATTTGGCTATAGCCAAAGAGAAAAATGGTGATGGTT
TTATCACTCTCGAGGATGTCTCCAAGATGAAGTACACTGCCAAGGTAGTAGAAGAA

consensusID : consensus_12525#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [GTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGTAAGCCAATAATTTACTATAGTATATTTCTCTAAAAGTGCTTTCAAGTCTCAAATGGCTCTCACACATGAACAGATCGATCCCATATCTGGCATGTTGCTGTCCGATGAGCATTCCTACATATGAATGGATCACTTGATCA]

[+] EMBL CF326101             [GTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGTAAGCCAATAATTTACTATAGTATATTTCTCTAAAAGTGCTTTCAAGTCTCAAATGGCTCTCACACATGAACAGATCGATCCCATATCTGGCATGTTGCTGTCCGATGAGCATTCCTACATATGAATGGATCACTTGATCA]




>consensus_12525#2
GTTTGAGAATATATGCAAGATATTCGTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGAT
CCACGGATGGTTCACCGGTTTGGTTGCTGGGTTCAGGTCGTTACCACTGGACATGCCAGG
AACAGCGCTCCACCACGCTCGAAAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGA
GCTCGAGAGGAGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGG
TGACCTGATGAGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGA
TGAGGTCGTGGATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGC
CATCATGTGGGCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGT
AAGCCAATAATTTACTATAGTATATTTCTCTAAAAGTGCTTTCAAGTCTCAAATGGCTCT
CACACATGAACAGATCGATCCCATATCTGGCATGTTGCTGTCCGATGAGCATTCCTACAT
ATGAATGGATCACTTGATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12525#0      AGATCCACAAACTCACTCTACTTGCACCACATGATACTTATCACAATTCACACATCGTAC 60
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CAAACATTCTCAAGTGCACCAAGACAAGCTTTGTACAATAGCAGCAGCAGCAGCAGAGAT 120
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CAGTGATTAGGCTTTAAATCACTGATCAAGATGAGTGGCGCAACGGCGGACTGGGCATGG 180
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      TGGCTCGGCCTCGTCGCCGGCGCCGTCCCGCTGCTCGCCCTCGCCGTCTGGCACTGCACC 240
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      GACGCCTTCCACAGCGCCGCCTTCGCGTTCCGCCGCCGCGGGACACGCGCGAGGCTCCCC 300
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CCGGGCCACATGGGCCTGCCGTTCGTCGGCGAGACCCTCGCCCTGATCTGGTACTTCAAC 360
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CTCGCCCGCCGCCCCGACGCCTTCATCGAGGCCAAGAGGCGGCGCTACTGCTACGGCGAC 420
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      GGCGACGACGACGGCGGCATCTACCGGACGCACCTGTTCGGCTCGCCCGCGGTGCTCGTC 480
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      TGCTCGCCGGCGTCCAACGGGTTCGTGTTCCGGTCGGCGCCGCCCGGCAGCTTCGGCGTC 540
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      GGGTGGCCGGTGCCGGAGCTCGTCGGCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGG 600
consensus_12525#1      -------------------------GCGCCTCGTCCCTGGTGAACGTGCACGGCGGCCGG 35
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACC 660
consensus_12525#1      CACGCCAGGCTGCGCAGGTTCGTCCTCGGCGCCATCAACAGGCCGGGCTCACTCCGGACC 95
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      ATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGC 720
consensus_12525#1      ATCGCGCGGGTGGCGCAGCCGCGCGTGGCGGCGGCGCTGCGGTCGTGGGCGGCCAAGGGC 155
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      ACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTC 780
consensus_12525#1      ACCATCACCGCCGCCACCGAGATGAAGAATGTGACGTTTGAGAATATATGCAAGATATTC 215
consensus_12525#2      -----------------------------------GTTTGAGAATATATGCAAGATATTC 25
                                                          *************************

consensus_12525#0      GTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTT 840
consensus_12525#1      GTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTT 275
consensus_12525#2      GTGAGTATGGAGCCGTCGCCTCTAACCGAAAAGATCCACGGATGGTTCACCGGTTTGGTT 85
                       ************************************************************

consensus_12525#0      GCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAG 900
consensus_12525#1      GCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAG 335
consensus_12525#2      GCTGGGTTCAGGTCGTTACCACTGGACATGCCAGGAACAGCGCTCCACCACGCTCGAAAG 145
                       ************************************************************

consensus_12525#0      ------------------------------------------------------------
consensus_12525#1      GTGATCTCTTTTGATGTTCCCTTTTCTCTCTTTGCTTGGATTTCCTATGCCGGCACACAT 395
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      ---------------TGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGG 945
consensus_12525#1      CTGCACACCATGCAGTGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGG 455
consensus_12525#2      ---------------TGCCGGAGAAAGCTGAACTCGGTGTTCAGGGAGGAGCTCGAGAGG 190
                                      *********************************************

consensus_12525#0      AGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATG 1005
consensus_12525#1      AGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGAC------GGTGACCTGATG 509
consensus_12525#2      AGGAAGGTGAAGATGGTGACCGGAGAAGGAGGCGACGACGACGACGACGGTGACCTGATG 250
                       ******************************************      ************

consensus_12525#0      AGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTG 1065
consensus_12525#1      AGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTG 569
consensus_12525#2      AGCGGGCTGATGCACGTGGAGGATGAGCAAGGTAGACGACTCGACGACGATGAGGTCGTG 310
                       ************************************************************

consensus_12525#0      GATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGG 1125
consensus_12525#1      GATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGG 629
consensus_12525#2      GATAACATAGTCTCCCTTGTCATCGCGGGCTATGAGTCAACTGCTAGTGCCATCATGTGG 370
                       ************************************************************

consensus_12525#0      GCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTG 1185
consensus_12525#1      GCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGAGGAAAATTTG 689
consensus_12525#2      GCGACCTACCATCTCGCAAAATCGCCCAGTGCCCTTGCCAAGCTAAGAGTAAGCCAATAA 430
                       *************************************************      * *  

consensus_12525#0      GCCATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATG 1245
consensus_12525#1      GCTATAGCCAAAGAGAAAAATGGTGATGGTTTTATCACTCTCGAGGATGTCTCCAAGATG 749
consensus_12525#2      TTTACTATAGTATATTTCTCTAAAAGTGCTTTCA--AGTCTCAAATGGCTCTCACACATG 488
                          *       * *      *     ** *** *  * **** *     ****  * ***

consensus_12525#0      AAGTACACTG--CCAAGGTAGTAGAAGAAACAATCCGATTGGCCAACATAGCTCCGA-TG 1302
consensus_12525#1      AAGTACACTG--CCAAGGTAGTAGAAGAA------------------------------- 776
consensus_12525#2      AA-CAGATCGATCCCATATCTGGCATGTTGCTGTCCGATGAGCATTCCTACATATGAATG 547
                       **  * *  *  ** *  *     * *                                 

consensus_12525#0      GCTCACCGCGTGGCACTCAGAGATGTTGAGTACCGAGGGTATACAATCCCAAAAGGGTGG 1362
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      GATCACTTGATCA----------------------------------------------- 560
                                                                                   

consensus_12525#0      AAAGTTATTGTGTGGATCCGATCACTACATGTCGACCCAGCATACTACGACAATCCGTTA 1422
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      AGTTTCAACCCGGATAGATGGGATAAATCAGCGGAGCTAGGCACGTACCAGGTGTTCGGT 1482
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      GGCGGCGAGAGGATCTGCGCCGGCAACATGCTGGCAAGGCTGCAGCTCACCATCATGCTC 1542
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CATCATCTCTCTTGTGGTTACAAATGGGAGTTGCTGAATCCTGACGCAGGGATTGTTTAC 1602
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CTTCCGCACCCAAGGCCAACAGATGGGGCAGTGATGTCCTTCAGTGAACTCTGATGGCAG 1662
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CTATATCATTCAGACATAGAATAAAGTCACCAGTACATTCTGTGGCTTAAGAACTTCAGA 1722
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      GTTCATATATACTATTGCTAGGTGCAAGACTGATTAAGAAAAAGCTGAGAAGCAACAATG 1782
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      CATGATATGTATCACACCAAGCTGAGTTTCTTTAAATGTGTTATTCAGTTGTTGTTCCAG 1842
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      ATGTTTTGTATATACGTAAATAAACTCTACCAAGAATTTCTGTCTATTAATAAATTGTGA 1902
consensus_12525#1      ------------------------------------------------------------
consensus_12525#2      ------------------------------------------------------------
                                                                                   

consensus_12525#0      GCTTTTGTGAGTTGAAAAAAAAAA 1926
consensus_12525#1      ------------------------
consensus_12525#2      ------------------------