These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 863 fasta sequence [CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG-TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCTACTGTGATTTAAAAAAAAAAAAAA] [+] EMBL AK100260 [CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGT ] [+] EMBL AK107735 [ ACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTGCGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCAT CATTAATAATACATGTAAGAATAAAGTTTCTACTGTGATTT ] [+] EMBL AU162028 [ AGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGNAATCCTACCTGTTTCAAAGC ] [+] EMBL BE229983 [ AGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCACCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTAT ] [+] EMBL BE229973 [ AGCCAGAGTTGAGAGTTCGGTGGATCTCCCTTCGCTCGCCACGTGGC CCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCATGACGAGGTGGTGCGCACCATCATCAAGCGCGTTCCGCCCTCCTCCCCGGCGCTTCTACCCAACTACCACAGGGTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATG ] [+] EMBL BE229886 [ AGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCATTCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAAATTTCCTT ] [+] EMBL AU174388 [ AGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGT ] [+] EMBL AA753342 [ gagTTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCTAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACCACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAAT ] [+] EMBL AU161859 [ CAGGGTTGAAACCTNCCAATCATTCATGCAGGAAATCNAACAGCCTGGGNCGNCGACGNCGACGNCCCAGGTTGAGATTTGAAGGACTNCATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATNTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTNTACTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT] [+] EMBL BE228839 [GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12526#0 CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTC 60 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 GCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCA 120 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 CCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTC 180 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 GTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCC 240 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 TCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCT 300 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 GCAATCCTACCTGTTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGAT 360 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 GCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGA-CAAGAGTTGA 419 consensus_12526#1 ---------------------GAGCTCG----TGCCGAATTCGGCACGAGCAAGAGTTGA 35 ** * * ** ** * ** * ** ********** consensus_12526#0 GATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGC 479 consensus_12526#1 GATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGC 95 ********************* **** ************ ******************* consensus_12526#0 AGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAA 539 consensus_12526#1 NGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAA 155 *********************************** ********** ***** ****** consensus_12526#0 AGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTC 599 consensus_12526#1 AGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTC 215 ******************** ********************************** **** consensus_12526#0 CAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGAC 659 consensus_12526#1 CAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGAC 275 ************************* *************** ****************** consensus_12526#0 GACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATA 719 consensus_12526#1 GACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATA 335 ******** *********************************** ************** consensus_12526#0 TAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGA 779 consensus_12526#1 TNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT----------------- 378 * ************************ * **** ********* consensus_12526#0 GTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCT 839 consensus_12526#1 ------------------------------------------------------------ consensus_12526#0 ACTGTGATTTAAAAAAAAAAAAAA 863 consensus_12526#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||