Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12526 cluster # 12526       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12526#0 length = 863 sequences # 9  
consensus_12526#1 length = 378 sequences # 1  

consensusID : consensus_12526#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 863
fasta sequence
                              [CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG-TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCTACTGTGATTTAAAAAAAAAAAAAA]

[+] EMBL AK100260             [CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGT                            ]
[+] EMBL AK107735             [   ACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTGCGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCAT CATTAATAATACATGTAAGAATAAAGTTTCTACTGTGATTT              ]
[+] EMBL AU162028             [                   AGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGNAATCCTACCTGTTTCAAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BE229983             [                       AGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCACCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTAT                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE229973             [                       AGCCAGAGTTGAGAGTTCGGTGGATCTCCCTTCGCTCGCCACGTGGC CCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCATGACGAGGTGGTGCGCACCATCATCAAGCGCGTTCCGCCCTCCTCCCCGGCGCTTCTACCCAACTACCACAGGGTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BE229886             [                       AGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCATTCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAAATTTCCTT                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU174388             [                                  AGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGT                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AA753342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gagTTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCTAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACCACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAAT                                                                                                     ]
[+] EMBL AU161859             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAGGGTTGAAACCTNCCAATCATTCATGCAGGAAATCNAACAGCCTGGGNCGNCGACGNCGACGNCCCAGGTTGAGATTTGAAGGACTNCATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATNTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTNTACTAAAAAAAAAAAAAAAAAAAAA]


>consensus_12526#0 CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTC GCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCA CCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTC GTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCC TCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCT GCAATCCTACCTGTTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGAT GCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAG ATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCA GAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAA GATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCC AGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACG ACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATAT AGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAG TGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCTA CTGTGATTTAAAAAAAAAAAAAA



consensusID : consensus_12526#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence
                              [GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT]

[+] EMBL BE228839             [GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT]


>consensus_12526#1 GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAG ACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAA TGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGG TTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTC NTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGG ACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATT ANCNTGTTNGTATGAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12526#0      CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTC 60
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      GCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCA 120
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      CCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTC 180
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      GTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCC 240
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      TCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCT 300
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      GCAATCCTACCTGTTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGAT 360
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      GCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGA-CAAGAGTTGA 419
consensus_12526#1      ---------------------GAGCTCG----TGCCGAATTCGGCACGAGCAAGAGTTGA 35
                                            **  * *    **  ** * **  * ** **********

consensus_12526#0      GATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGC 479
consensus_12526#1      GATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGC 95
                       *********************  **** ************ *******************

consensus_12526#0      AGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAA 539
consensus_12526#1      NGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAA 155
                        *********************************** ********** ***** ******

consensus_12526#0      AGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTC 599
consensus_12526#1      AGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTC 215
                       ******************** ********************************** ****

consensus_12526#0      CAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGAC 659
consensus_12526#1      CAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGAC 275
                       ************************* *************** ******************

consensus_12526#0      GACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATA 719
consensus_12526#1      GACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATA 335
                       ********  *********************************** **************

consensus_12526#0      TAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGA 779
consensus_12526#1      TNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT----------------- 378
                       * ************************ * **** *********                 

consensus_12526#0      GTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCT 839
consensus_12526#1      ------------------------------------------------------------
                                                                                   

consensus_12526#0      ACTGTGATTTAAAAAAAAAAAAAA 863
consensus_12526#1      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)