These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCGGTCCTCAAGAACCGCGGCGTCACGGATGGGTGGTGGACCGGACGGTGCCAGACCTCANCTCCNACAGCCGCGAGATCAAGTTCNCGGTCAAGGCGCAGGTGCTCANAGAGACAGAGCCCGGCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGNCGCCCNCCCTGCCGNTTCNAGGTCCGCCGATGGCCCNAGGCTGAAAAGTCCAAGNATGTGTCCGNNGAANCTNCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTTGCGAGTGTGNTCTNACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTGTATTTGGTCACCGGGNTATANATTAAATTATCACCCTCNCTATTATATAA] [+] EMBL AT003759 [TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCGGTCCTCAAGAACCGCGGCGTCACGGATGGGTGGTGGACCGGACGGTGCCAGACCTCANCTCCNACAGCCGCGAGATCAAGTTCNCGGTCAAGGCGCAGGTGCTCANAGAGACAGAGCCCGGCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGNCGCCCNCCCTGCCGNTTCNAGGTCCGCCGATGGCCCNAGGCTGAAAAGTCCAAGNATGTGTCCGNNGAANCTNCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTTGCGAGTGTGNTCTNACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTGTATTTGGTCACCGGGNTATANATTAAATTATCACCCTCNCTATTATATAA] consensusID : consensus_1253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGACCTTNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAGAGACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGGCGGCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATGTGGCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTTGCGAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTGNATTTGGTCACCGGGCTATATATTAAATTATACCCTCACTATTATATAAAAAAAAAA] [+] EMBL AT003614 [CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGACCTTNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAGAGACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGGCGGCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATGTGGCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTTGCGAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTGNATTTGGTCACCGGGCTATATATTAAATTATACCCTCACTATTATATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1253#0 TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCG 60 consensus_1253#1 ------------------------------------------------------------ consensus_1253#0 GTCCTCAAGAACCGCGG--CGTCACGGA-TGGGTGGTGGACC---GGACGGTG-CCAGAC 113 consensus_1253#1 --CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGAC 58 ****** *** * ******** ************* * **** ****** consensus_1253#0 CTCAN---CTCCNACAGCC-GCGAGATCAA-GTTCNCGGTCAAGGCGCAGGTGCTCANAG 168 consensus_1253#1 CTTNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAG 118 ** * ****** ********** **** ********************* ** consensus_1253#0 AGACAGAGCCCGGCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGN 228 consensus_1253#1 AGACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGG 178 **** *** *********** *** * ** *********** ******** ** **** consensus_1253#0 CGCCCNCCCTG-CCGNTTCNAGGTCCGCCGATGGC-CCNAGGCTGAAAAGTCCAAGNATG 286 consensus_1253#1 CGGCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATG 238 ** ** ***** *** *** ************** ** ***************** *** consensus_1253#0 TGTCCGNNGAANCTNCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTT 346 consensus_1253#1 TGGCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTT 298 ** *** *** ** ******************************* * *********** consensus_1253#0 GCGAGTGTGNTCTNACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGT 406 consensus_1253#1 GCGAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGT 358 ********* *** ********************************************* consensus_1253#0 GGGGGCAAATGCATCTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTG 466 consensus_1253#1 GGGGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTG 418 ******************************** * ***** ****************** consensus_1253#0 TATTTGGTCACCGGGNTATANATTAAATTATCACCCTCNCTATTATATAA-------- 516 consensus_1253#1 NATTTGGTCACCGGGCTATATATTAAATTAT-ACCCTCACTATTATATAAAAAAAAAA 475 ************** **** ********** ****** *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||