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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 757 fasta sequence
[GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACAAATAAACCTAAATTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTGGCACCTTTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT-GAGGAACGAGCCGATGAAT-GACATGAGGTAGCCGAAGAAGGGCACC-GTCGGACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGATTGCCACCCTCGGCGGCGCGCTGCCNCGCGGTAGAGACAGCCTTTTCCTCAACGGCCGCCGTGATCTGCGCCACGAACANCGCGTACTTTGGCCACGGGTCACCACCGTATCACCATAGCAATCTTGGTGTAACTTTTCGAAGGGNGGTTAAGTTACCTGGAATGGCATTTCCCCAGAAAAAGTATCCACCCCCCGGGAGGCCTTTTTAGGGGGGCCCGCGC]
[+] EMBL AW155323 [GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACAAATAAACCTAAATTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTGGCACCAATAATATATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCCGAAGAAGGGCACC GTC GACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGATTGCCACCCTCGGCGGCGCGCTGCCNCGCGGTAGAGACAGCCTTTTCCTCAACGGCCGCCGTGATCTGCGCCACGAACANCGCGTACTTTGGCCACGGGTCACCACCGTATCACCATAGCAATCTTGGTGTAACTTTTCGAAGGGNGGTTAAGTTACCTGGAATGGCATTTCCCCAGAAAAAGTATCCACCCCCCGGGAGGCCTTTTTAGGGGGGCCCGCGC]
[-] EMBL AU056924 [ TTTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCNCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCCGAAGNAGGGCACC GTCGGACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGATGGCCACCCTCGCCGGNGCGCTGCCCCG ]
[-] EMBL AU056929 [ TTTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGANGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCTGGAGGAACGAGCCGATGAATGGACATGAGGTAGCCGAAGAAGGGCACCGGTCTGACGCCACn ]
[-] EMBL AU056136 [ TTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCC ]
[-] EMBL AU056549 [ TTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACNCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCCGAAGA ]
consensusID : consensus_12536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 743 fasta sequence
[TTTTTTTTTTTTTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTNGCACCAATAATATTTTTTTTTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTGACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCGATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTT-GTAGATCTTGAGGTAGCAAAGGCAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAGCCAAAAAAAGGCACCGTCAACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGATGGCCACCCTCACCGGCACGCTGCCTCGGGTCAGAGACAGCCTCTCCTCGACGGCCGCCGTGATCGGCGCCACGAGCAGCGCGTACTTGGCCATGGGGTTCACCAGCGTCATCACGATGGCGATCTTGGTGTAGAGCTTGCCGAAGGGCAGGTTCAGCGTCACCTGCGACTGCACATCGTCACCGTAAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCCCCTAATCAAGGCTAT]
[-] EMBL AU056799 [TTTTTTTTTTTTTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTNGCACCAATAATATATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTNGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAG ]
[+] EMBL CA759798 [ TTTTTTTTTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTAACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCAATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTT GTAGATCTTGAGGTAGCAAAGGCAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAGCCAAAAAAAGGCACCGTCAACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGATGGCCACCCTCACCGGCACGCTGCCTCGGGTCAGAGACAGCCTCTCCTCGACGGCCGCCGTGATCGGCGCCACGAGCAGCGCGTACTTGGCCATGGGGTTCACCAGCGTCATCACGATGGCGATCTTGGTGTAGAGCTTGCCGAAGGGCAGGTTCAGCGTCACCTGCGACTGCACATCGTCACCGTAAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCCCCTAATCAAGGCTAT]
[+] EMBL CA759797 [ TTTTTTTTTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTAACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCAATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTT GTAGATCTTGAGGTAGCAAAGGCAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAGCCAAAAAAAGGCACCGTCAACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGATGGCCACCCTCACCGGCACGCTGCCTCGGGTCAGAGACAGCCTCTCCTCGACGGCCGCCGTGATCGGCGCCACGAGCAGCGCGTACTTGGCCATGGGGTTCACCAGCGTCATCACGATGGCGATCTTGGTGTAGAGCTTGCCGAAGGGCAGGTTCAGCGTCACCTGCGACTGCACATCGTCACCGTAAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCCCCTAATCAAGGCTAT]
[+] EMBL BI306432 [ CAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCAAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAAACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTGACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCGATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTT GTAAATC ]
consensusID : consensus_12536#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[TTTTTTTCACCTAAGTCAATATTANGGGNTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGNGGTCACACTATGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAGAAAGTGGTATAATCTGGCAAGCAAAGAAGTGTNNCGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAACACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAGCCGAAGAAAGGCACCGTCGACGCCACACCACCGTGCTGGCGAGGATGGCGGTGCTGATGGCCACCCTCACCGGAACAGCTGCCTCGCGTCAGAGACAGCCTCTCCTCGACGGCGCGTGATCGGGCCACGAGCAGGCGTACTATGGACATCGGGTTCACCAGCGTCATCACGATGGGGANCTGGGTAANAGATTGCCGGAGGGGCAGGTTCAGGCAGTCACCTGCGACTGGAANATTCGGCAACGNACANATCACGGT]
[-] EMBL BM038215 [TTTTTTTCACCTAAGTCAATATTANGGGNTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGNGGTCACACTATGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAGAAAGTGGTATAATCTGGCAAGCAAAGAAGTGTNNCGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAACACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAGCCGAAGAAAGGCACCGTCGACGCCACACCACCGTGCTGGCGAGGATGGCGGTGCTGATGGCCACCCTCACCGGAACAGCTGCCTCGCGTCAGAGACAGCCTCTCCTCGACGGCGCGTGATCGGGCCACGAGCAGGCGTACTATGGACATCGGGTTCACCAGCGTCATCACGATGGGGANCTGGGTAANAGATTGCCGGAGGGGCAGGTTCAGGCAGTCACCTGCGACTGGAANATTCGGCAACGNACANATCACGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12536#1 -------------------------------------TTTTTTTTTTTTTAGTGTCTCAT 23
consensus_12536#2 ------------------------------------------------------------
consensus_12536#0 GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACAAATAAACCTAAATTAGTGTCTCAT 60
consensus_12536#1 ATCTGATATTTATTAAATACAACATTGACATTGTTNGCACCAATAATATTTTTTTTTTTT 83
consensus_12536#2 ------------------------------------------------------TTTTTT 6
consensus_12536#0 ATCTGATATTTATTAAATACAACATTGACATTGTTGGCACCTTTTTTTTATACAATTTTT 120
*****
consensus_12536#1 TCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATT 143
consensus_12536#2 TCACCTAAGTCAATATTANGGGNTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATT 66
consensus_12536#0 TCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATT 180
****************** * ************** *************** ******
consensus_12536#1 TTTTCAAGCGCCCTTTATTTTAAGGACACTGGGG-TCACACTATTGTCTGTAAGTACTAC 202
consensus_12536#2 TTTTCAAGCGCCCTTTATTTTAAGGACACTGGNGGTCACACTAT-GTCTGTAAGTACTAC 125
consensus_12536#0 TTTTCAAGCGCCCTTTATTTTAAGGACACTGTGG-TCACACTATTGTCTGTAAGTACTAC 239
******************************* * ********* ***************
consensus_12536#1 TGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGC--A 260
consensus_12536#2 TGTCTACTATCAGAGACCAACAACAACCAACCACCTCAGAAAGTGG-TATAATCTGGCAA 184
consensus_12536#0 TGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGC--A 297
********************** *************** **** ** ********* *
consensus_12536#1 GCAAAAAAGTGTAC-GTGCCGGTGACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCG 319
consensus_12536#2 GCAAAGAAGTGTNNCGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCG 244
consensus_12536#0 GCAAAGAAGTGTAC-GTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCG 356
***** ****** ************** ** **************** **********
consensus_12536#1 ATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAAAGG 379
consensus_12536#2 ATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGG 304
consensus_12536#0 ATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGG 416
****************** ** ********************************** ***
consensus_12536#1 CAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAG 439
consensus_12536#2 CAAGGGAACAACACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAG 364
consensus_12536#0 CAAGGGAACAGCACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAG 476
********** *************** ** ************** ***************
consensus_12536#1 CCAAAAAAAGGCACCGTCA-ACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGAT 498
consensus_12536#2 CCGAAGAAAGGCACCGTCG-ACGCCAC-ACCACCGTGCTGGCGAGGATGGCGGTGCTGAT 422
consensus_12536#0 CCGAAGAAGGGCACCGTCGGACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGAT 536
** ** ** ********* ******* ************** *****************
consensus_12536#1 GGCCACCCTCACCGGCAC-GCTGCCTCGGGTCAGAGACAGCCTCT-CCTCGACGGCCGCC 556
consensus_12536#2 GGCCACCCTCACCGGAACAGCTGCCTCGCGTCAGAGACAGCCTCT-CCTCGACGGCG--C 479
consensus_12536#0 TGCCACCCTCGGCGGCGC-GCTGCCNCGCGGTAGAGACAGCCTTTTCCTCAACGGCCGCC 595
********* *** * ****** ** * *********** * **** ***** *
consensus_12536#1 GTGATCGGCGCCACGAGCAGCGCGTACT-TGGCCATGGGGTTCACCAGCGTCATCACGAT 615
consensus_12536#2 GTGATCGG-GCCACGAGCAG-GCGTACTATGGACATCGGGTTCACCAGCGTCATCACGAT 537
consensus_12536#0 GTGATCTGCGCCACGAACANCGCGTACTTTGGCCACGGG--TCACCACCGT-ATCACCAT 652
****** * ******* ** ******* *** ** ** ****** *** ***** **
consensus_12536#1 GGCGATCTTGGTGTAGAGCTTGCCG-AAGGGCAGGTTCAGC--GTCACCTGCGACTGCAC 672
consensus_12536#2 GGGGANCTGGGTA-ANAGATTGCCGGAGGGGCAGGTTCAGGCAGTCACCTGCGACTGGAA 596
consensus_12536#0 AGCAATCTTGGTG--TAACTTTTCG--AAGGGNGGTTAAG----TTACCTGGAATGGCAT 704
* * ** *** * ** ** ** **** ** * ***** * * *
consensus_12536#1 A--TCGTCACCGT--AAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCC 728
consensus_12536#2 NATTCGGCAACGNACANATCACGGT----------------------------------- 621
consensus_12536#0 T-----TCCCCAGAAAAAGTA------TCCACCCCCCGGGAGGCCTTTTTAGGGGGGCCC 753
* * * * *
consensus_12536#1 CCTAATCAAGGCTAT 743
consensus_12536#2 ---------------
consensus_12536#0 GCGC----------- 757
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||