These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 757 fasta sequence [GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACAAATAAACCTAAATTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTGGCACCTTTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT-GAGGAACGAGCCGATGAAT-GACATGAGGTAGCCGAAGAAGGGCACC-GTCGGACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGATTGCCACCCTCGGCGGCGCGCTGCCNCGCGGTAGAGACAGCCTTTTCCTCAACGGCCGCCGTGATCTGCGCCACGAACANCGCGTACTTTGGCCACGGGTCACCACCGTATCACCATAGCAATCTTGGTGTAACTTTTCGAAGGGNGGTTAAGTTACCTGGAATGGCATTTCCCCAGAAAAAGTATCCACCCCCCGGGAGGCCTTTTTAGGGGGGCCCGCGC] [+] EMBL AW155323 [GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACAAATAAACCTAAATTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTGGCACCAATAATATATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCCGAAGAAGGGCACC GTC GACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGATTGCCACCCTCGGCGGCGCGCTGCCNCGCGGTAGAGACAGCCTTTTCCTCAACGGCCGCCGTGATCTGCGCCACGAACANCGCGTACTTTGGCCACGGGTCACCACCGTATCACCATAGCAATCTTGGTGTAACTTTTCGAAGGGNGGTTAAGTTACCTGGAATGGCATTTCCCCAGAAAAAGTATCCACCCCCCGGGAGGCCTTTTTAGGGGGGCCCGCGC] [-] EMBL AU056924 [ TTTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCNCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCCGAAGNAGGGCACC GTCGGACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGATGGCCACCCTCGCCGGNGCGCTGCCCCG ] [-] EMBL AU056929 [ TTTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGANGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCTGGAGGAACGAGCCGATGAATGGACATGAGGTAGCCGAAGAAGGGCACCGGTCTGACGCCACn ] [-] EMBL AU056136 [ TTTTTTTATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCC ] [-] EMBL AU056549 [ TTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACNCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCT GAGGAACGAGCCGATGAAT GACATGAGGTAGCCGAAGA ] consensusID : consensus_12536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 743 fasta sequence [TTTTTTTTTTTTTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTNGCACCAATAATATTTTTTTTTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTGACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCGATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTT-GTAGATCTTGAGGTAGCAAAGGCAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAGCCAAAAAAAGGCACCGTCAACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGATGGCCACCCTCACCGGCACGCTGCCTCGGGTCAGAGACAGCCTCTCCTCGACGGCCGCCGTGATCGGCGCCACGAGCAGCGCGTACTTGGCCATGGGGTTCACCAGCGTCATCACGATGGCGATCTTGGTGTAGAGCTTGCCGAAGGGCAGGTTCAGCGTCACCTGCGACTGCACATCGTCACCGTAAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCCCCTAATCAAGGCTAT] [-] EMBL AU056799 [TTTTTTTTTTTTTAGTGTCTCATATCTGATATTTATTAAATACAACATTGACATTGTTNGCACCAATAATATATACAATTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGTGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGCAGCAAAGAAGTGTACGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTNGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAGCACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAG ] [+] EMBL CA759798 [ TTTTTTTTTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTAACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCAATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTT GTAGATCTTGAGGTAGCAAAGGCAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAGCCAAAAAAAGGCACCGTCAACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGATGGCCACCCTCACCGGCACGCTGCCTCGGGTCAGAGACAGCCTCTCCTCGACGGCCGCCGTGATCGGCGCCACGAGCAGCGCGTACTTGGCCATGGGGTTCACCAGCGTCATCACGATGGCGATCTTGGTGTAGAGCTTGCCGAAGGGCAGGTTCAGCGTCACCTGCGACTGCACATCGTCACCGTAAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCCCCTAATCAAGGCTAT] [+] EMBL CA759797 [ TTTTTTTTTTTTTCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTAACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCAATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTT GTAGATCTTGAGGTAGCAAAGGCAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAGCCAAAAAAAGGCACCGTCAACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGATGGCCACCCTCACCGGCACGCTGCCTCGGGTCAGAGACAGCCTCTCCTCGACGGCCGCCGTGATCGGCGCCACGAGCAGCGCGTACTTGGCCATGGGGTTCACCAGCGTCATCACGATGGCGATCTTGGTGTAGAGCTTGCCGAAGGGCAGGTTCAGCGTCACCTGCGACTGCACATCGTCACCGTAAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCCCCTAATCAAGGCTAT] [+] EMBL BI306432 [ CAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCAAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGGGTCACACTATTGTCTGTAAGTACTACTGTCTACTATCAGAAACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGCAGCAAAAAAGTGTACGTGCCGGTGACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCGATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTT GTAAATC ] consensusID : consensus_12536#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [TTTTTTTCACCTAAGTCAATATTANGGGNTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGNGGTCACACTATGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAGAAAGTGGTATAATCTGGCAAGCAAAGAAGTGTNNCGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAACACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAGCCGAAGAAAGGCACCGTCGACGCCACACCACCGTGCTGGCGAGGATGGCGGTGCTGATGGCCACCCTCACCGGAACAGCTGCCTCGCGTCAGAGACAGCCTCTCCTCGACGGCGCGTGATCGGGCCACGAGCAGGCGTACTATGGACATCGGGTTCACCAGCGTCATCACGATGGGGANCTGGGTAANAGATTGCCGGAGGGGCAGGTTCAGGCAGTCACCTGCGACTGGAANATTCGGCAACGNACANATCACGGT] [-] EMBL BM038215 [TTTTTTTCACCTAAGTCAATATTANGGGNTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATTTTTTCAAGCGCCCTTTATTTTAAGGACACTGGNGGTCACACTATGTCTGTAAGTACTACTGTCTACTATCAGAGACCAACAACAACCAACCACCTCAGAAAGTGGTATAATCTGGCAAGCAAAGAAGTGTNNCGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCGATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGGCAAGGGAACAACACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAGCCGAAGAAAGGCACCGTCGACGCCACACCACCGTGCTGGCGAGGATGGCGGTGCTGATGGCCACCCTCACCGGAACAGCTGCCTCGCGTCAGAGACAGCCTCTCCTCGACGGCGCGTGATCGGGCCACGAGCAGGCGTACTATGGACATCGGGTTCACCAGCGTCATCACGATGGGGANCTGGGTAANAGATTGCCGGAGGGGCAGGTTCAGGCAGTCACCTGCGACTGGAANATTCGGCAACGNACANATCACGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12536#1 -------------------------------------TTTTTTTTTTTTTAGTGTCTCAT 23 consensus_12536#2 ------------------------------------------------------------ consensus_12536#0 GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTACAAATAAACCTAAATTAGTGTCTCAT 60 consensus_12536#1 ATCTGATATTTATTAAATACAACATTGACATTGTTNGCACCAATAATATTTTTTTTTTTT 83 consensus_12536#2 ------------------------------------------------------TTTTTT 6 consensus_12536#0 ATCTGATATTTATTAAATACAACATTGACATTGTTGGCACCTTTTTTTTATACAATTTTT 120 ***** consensus_12536#1 TCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAAATACAAACTAACTCCCAAAATT 143 consensus_12536#2 TCACCTAAGTCAATATTANGGGNTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATT 66 consensus_12536#0 TCACCTAAGTCAATATTATTGATTCAGCTTTATCTTAGATACAAACTAACTCCGAAAATT 180 ****************** * ************** *************** ****** consensus_12536#1 TTTTCAAGCGCCCTTTATTTTAAGGACACTGGGG-TCACACTATTGTCTGTAAGTACTAC 202 consensus_12536#2 TTTTCAAGCGCCCTTTATTTTAAGGACACTGGNGGTCACACTAT-GTCTGTAAGTACTAC 125 consensus_12536#0 TTTTCAAGCGCCCTTTATTTTAAGGACACTGTGG-TCACACTATTGTCTGTAAGTACTAC 239 ******************************* * ********* *************** consensus_12536#1 TGTCTACTATCAGAGACCAACAACAACCAACCACCTCAAAAAGGGGCTATAATCTGC--A 260 consensus_12536#2 TGTCTACTATCAGAGACCAACAACAACCAACCACCTCAGAAAGTGG-TATAATCTGGCAA 184 consensus_12536#0 TGTCTACTATCAGAGACCAACAGCAACCAACCACCTCAGAAAGTGGCTATAATCTGC--A 297 ********************** *************** **** ** ********* * consensus_12536#1 GCAAAAAAGTGTAC-GTGCCGGTGACGGCAACAAACACTCCTAGCAGCAAAATTCCGGCG 319 consensus_12536#2 GCAAAGAAGTGTNNCGTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCG 244 consensus_12536#0 GCAAAGAAGTGTAC-GTGCCGGTGACGGCGACGAACACTCCTAGCAGCAGAATTCCGGCG 356 ***** ****** ************** ** **************** ********** consensus_12536#1 ATGGCCACCATCTCCGTGGGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAAAGG 379 consensus_12536#2 ATGGCCACCATCTCCGTGTGGCGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGG 304 consensus_12536#0 ATGGCCACCATCTCCGTGCGGTGGATGCCATCGGCCTTGTAGATCTTGAGGTAGCAGAGG 416 ****************** ** ********************************** *** consensus_12536#1 CAAGGGAACAACACGGTCGCCATGACCCTAAGGAACGAGCCGATAAATGACATGAGGTAG 439 consensus_12536#2 CAAGGGAACAACACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAG 364 consensus_12536#0 CAAGGGAACAGCACGGTCGCCATGACGCTGAGGAACGAGCCGATGAATGACATGAGGTAG 476 ********** *************** ** ************** *************** consensus_12536#1 CCAAAAAAAGGCACCGTCA-ACGCCACCACCACCGTGCTGGCAAGGATGGCGGTGCTGAT 498 consensus_12536#2 CCGAAGAAAGGCACCGTCG-ACGCCAC-ACCACCGTGCTGGCGAGGATGGCGGTGCTGAT 422 consensus_12536#0 CCGAAGAAGGGCACCGTCGGACGCCACCACCACCGTGCTGGCGAGGATGGCGGTGCTGAT 536 ** ** ** ********* ******* ************** ***************** consensus_12536#1 GGCCACCCTCACCGGCAC-GCTGCCTCGGGTCAGAGACAGCCTCT-CCTCGACGGCCGCC 556 consensus_12536#2 GGCCACCCTCACCGGAACAGCTGCCTCGCGTCAGAGACAGCCTCT-CCTCGACGGCG--C 479 consensus_12536#0 TGCCACCCTCGGCGGCGC-GCTGCCNCGCGGTAGAGACAGCCTTTTCCTCAACGGCCGCC 595 ********* *** * ****** ** * *********** * **** ***** * consensus_12536#1 GTGATCGGCGCCACGAGCAGCGCGTACT-TGGCCATGGGGTTCACCAGCGTCATCACGAT 615 consensus_12536#2 GTGATCGG-GCCACGAGCAG-GCGTACTATGGACATCGGGTTCACCAGCGTCATCACGAT 537 consensus_12536#0 GTGATCTGCGCCACGAACANCGCGTACTTTGGCCACGGG--TCACCACCGT-ATCACCAT 652 ****** * ******* ** ******* *** ** ** ****** *** ***** ** consensus_12536#1 GGCGATCTTGGTGTAGAGCTTGCCG-AAGGGCAGGTTCAGC--GTCACCTGCGACTGCAC 672 consensus_12536#2 GGGGANCTGGGTA-ANAGATTGCCGGAGGGGCAGGTTCAGGCAGTCACCTGCGACTGGAA 596 consensus_12536#0 AGCAATCTTGGTG--TAACTTTTCG--AAGGGNGGTTAAG----TTACCTGGAATGGCAT 704 * * ** *** * ** ** ** **** ** * ***** * * * consensus_12536#1 A--TCGTCACCGT--AAATCAGGGAGCCCCACCACCGCCGGGAGCCCCTTGGCCTCGCCC 728 consensus_12536#2 NATTCGGCAACGNACANATCACGGT----------------------------------- 621 consensus_12536#0 T-----TCCCCAGAAAAAGTA------TCCACCCCCCGGGAGGCCTTTTTAGGGGGGCCC 753 * * * * * consensus_12536#1 CCTAATCAAGGCTAT 743 consensus_12536#2 --------------- consensus_12536#0 GCGC----------- 757 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||