These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2230 fasta sequence [GGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACGGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGGTAAGTTTGCTCCAGAAAACCATGTCTTCCCCCAGCAATTTCAGTTCTTAGAAGAAGCTATAGTAATACTGCTTTAATCTTAGACTATGGGCATGGTTCTTTTTCGCATGAGTATGTCTTAGAATGGGGAGAATAGCTACTGTAGTCCCTAAAGTTTCTATGTAGGATCATTTTAGTCCCTAACCTTTTAAATAGTTCAAAGAAATCCTTAAACTTTGTCATAAGGCCTAGAATAATCCTTGGGTCCACCAAAATCGTCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATAAATTGTCTAGTTTACCTTTATGTATATCATAGAAAAATAAATGTAAGGGTGAATTAGACATAACCATAGGGAAAAAAATACTTTTCCTTTTTTTCACCCTTTTGACGTATATTTTTGCTCTTACATATACCATATATTTTTTAATTTTTCCTTTTGTTTTTTATTTTCCTATGATATATGTAAATATAAATTGGACAAATCATATAGATTTTGCATAGGAGGGTGACATGGCATGTCCATGTGGCGATTTTGATGGGACCAAGGACTATATCAGCCCATGTGACAAATTTAAAGGACTTGTTTGAACAATATGAAAAATTAAGGACTAAAATGGCCCAGGAGCGAAACTTTAGGGACCATCTTGGCTATTCTCCCTCTTAGAATGTACAACTAATGATGGACTGAGACTTGATCTTCTTGTATCTGAGGGAGGTGCTTCTGTAATTCCGTTGTTCTTTAAAATGTAATCCATTATGAAATGCACTTAGTGAAGCATTATAGTACACACTATCTGACTTTTACTTGCATAAATCTTGTTAATTGCTGTCTTTTATTGTTGCAATCAGTGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTA-CCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAAACTCTATAGTAGAACCGTATAAAATTTCAGGTTTTTACTTTGTACTAAGAATTCTGCGTGCAAAAGGTTTCAGAGCACAACTGCTGCTGCTTCCTG] [+] EMBL AK121186 [GGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACGGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGGTAAGTTTGCTCCAGAAAACCATGTCTTCCCCCAGCAATTTCAGTTCTTAGAAGAAGCTATAGTAATACTGCTTTAATCTTAGACTATGGGCATGGTTCTTTTTCGCATGAGTATGTCTTAGAATGGGGAGAATAGCTACTGTAGTCCCTAAAGTTTCTATGTAGGATCATTTTAGTCCCTAACCTTTTAAATAGTTCAAAGAAATCCTTAAACTTTGTCATAAGGCCTAGAATAATCCTTGGGTCCACCAAAATCGTCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATAAATTGTCTAGTTTACCTTTATGTATATCATAGAAAAATAAATGTAAGGGTGAATTAGACATAACCATAGGGAAAAAAATACTTTTCCTTTTTTTCACCCTTTTGACGTATATTTTTGCTCTTACATATACCATATATTTTTTAATTTTTCCTTTTGTTTTTTATTTTCCTATGATATATGTAAATATAAATTGGACAAATCATATAGATTTTGCATAGGAGGGTGACATGGCATGTCCATGTGGCGATTTTGATGGGACCAAGGACTATATCAGCCCATGTGACAAATTTAAAGGACTTGTTTGAACAATATGAAAAATTAAGGACTAAAATGGCCCAGGAGCGAAACTTTAGGGACCATCTTGGCTATTCTCCCTCTTAGAATGTACAACTAATGATGGACTGAGACTTGATCTTCTTGTATCTGAGGGAGGTGCTTCTGTAATTCCGTTGTTCTTTAAAATGTAATCCATTATGAAATGCACTTAGTGAAGCATTATAGTACACACTATCTGACTTTTACTTGCATAAATCTTGTTAATTGCTGTCTTTTATTGTTGCAATCAGTGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTA CCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAAACTCTATAGTAGAACCGTATAAAATTTCAGGTTTTTACTTTGTACTAAGAATTCTGCGTGCAAAAGGTTTCAGAGCACAACTGCTGCTGCTTCCTG] [+] EMBL OSS12530A [ TGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTA CCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTANCTAAA ] [+] EMBL OSS13353A [ TGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACNCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGACGTATAGGGGAAGGATCAATTGATAGNATTAATNAAGGAGGCTACCCTTG ] [+] EMBL BE229786 [ gaTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAAGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACNAGCTGCANGTTATTGAGGGAGCAAATCNTAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTNGTGGATTTCATCACATCTAATTAGTTCTGCATGTCTGAGANACTGANACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTANGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCANAAAGCANGTGTNTCCGTGTATATTANTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGT CCTACAGGATTCCTGTTAATATCNAACTCTATAATANAACCGTNTAAAATTTCNGGGTNTTt ] consensusID : consensus_12540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1456 fasta sequence [ATTCATTGCGGCATTTACTTTAAAGAAGCCACAACCGTGAATTACAAAATCACACCTTAATTAAAAATAATAGGGAGAATAGCTACTTTAGTCCCTAAAGTTTCTCTGTAGGATCAGTTTAGTCCTTAACCTTTTAAATGGTCCAAAGAAATCCTTAACCTATGTCATAAGGCCTAGAATAGTCCTTGGGTCCACCAAAATCATCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATGAATTGTCTAATTTACCCTTACGTATATCATAGAAAAATAAATATAAGGGTAAATTAGACATAACCATAGGAAAAAAAATACTTGTTTTTTTACCCTTTTGAAGTATATGTTTGCTCTTACATATACCATATATTTTTTAACTTTTTCCTTTTGTTTTTTATCTTCCTATGCATAAAGGTAAATTGGACAAATCATATAGATTTTGCATATGAAGGTGACATGGCATGTCTATGTGGCGATTTTGGTGGGACCAAAGACTATATTAGCCCACATGATAAATTTAAAGGACTTGTTTGGATAATATGAAAGATTAAGGACTAAAATGACCCATGAGCGAAATTTTAGAGACCATATTAGCTATTCTCTCAAAATAATAAGAAAACTTCTCTCAATAGCCGCCTAAAGATAAAGTTATCACTTATCTATGGTTGACAAGTACCACCATTGGCTTGGCGGCTTTCAAGCTATATACATTTCTTGTCTATCTCGAACCAGAAAATAGAATATCAGAAATCAGCAACCGATTATTGTGCCGATCTAATTTTTCTCACGTCATTGCCAGTGGCAATCACCAAACCAAAACGAAAGATAACATCAGATAGTAAACTGAGAGTCGCTCGGCTAGATCTTGCCATCAACACAACCATCTTGGCCGATCTAGCGAGTACAGTGCGATGTAGGATGCACCACCCTCCTACCATTCCCATCATTGACGCGGCCGCGCTCAAGCAGGTCACCACCAAATGCGCGACCTTCATATGCAGCAACACCACTCCATGCGTCTTAACCTTGGTGGCCAGGACAAGATGATACTACTATGGTAAAACGATGATAAGACAGTGGCACCACGGGCCACGGCTGCCTAGCTGACCAAATCAAAGGCAATTTTCTGCCGGAACCAGCTTCAATGGCGTCGGGATCAGCCGGTGGCGAATCGATGGATGGACGCCATCTTCATCGGATGATTGCCATCACCGCCACCGCGCCACCGTCGTCGCCATGGGATCTGATCGATCGATCCGAGATATGGAGAAACTGTGATCCTTCACGCGAAGCTCAATCGCGTTGTGATCACGTGATCCACCGGAGCGCCCAACGCTGGTGTAAACGATGGTCGCCACAGATGGATGATCTAGTAAAATTCTTTCACAGTGCGTACATGTGGTGTTCTGCTTCCATACGTCTTTTTTTTTTTTTTTTTTTTTTTTT] [-] EMBL AK106600 [ATTCATTGCGGCATTTACTTTAAAGAAGCCACAACCGTGAATTACAAAATCACACCTTAATTAAAAATAATAGGGAGAATAGCTACTTTAGTCCCTAAAGTTTCTCTGTAGGATCAGTTTAGTCCTTAACCTTTTAAATGGTCCAAAGAAATCCTTAACCTATGTCATAAGGCCTAGAATAGTCCTTGGGTCCACCAAAATCATCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATGAATTGTCTAATTTACCCTTACGTATATCATAGAAAAATAAATATAAGGGTAAATTAGACATAACCATAGGAAAAAAAATACTTGTTTTTTTACCCTTTTGAAGTATATGTTTGCTCTTACATATACCATATATTTTTTAACTTTTTCCTTTTGTTTTTTATCTTCCTATGCATAAAGGTAAATTGGACAAATCATATAGATTTTGCATATGAAGGTGACATGGCATGTCTATGTGGCGATTTTGGTGGGACCAAAGACTATATTAGCCCACATGATAAATTTAAAGGACTTGTTTGGATAATATGAAAGATTAAGGACTAAAATGACCCATGAGCGAAATTTTAGAGACCATATTAGCTATTCTCTCAAAATAATAAGAAAACTTCTCTCAATAGCCGCCTAAAGATAAAGTTATCACTTATCTATGGTTGACAAGTACCACCATTGGCTTGGCGGCTTTCAAGCTATATACATTTCTTGTCTATCTCGAACCAGAAAATAGAATATCAGAAATCAGCAACCGATTATTGTGCCGATCTAATTTTTCTCACGTCATTGCCAGTGGCAATCACCAAACCAAAACGAAAGATAACATCAGATAGTAAACTGAGAGTCGCTCGGCTAGATCTTGCCATCAACACAACCATCTTGGCCGATCTAGCGAGTACAGTGCGATGTAGGATGCACCACCCTCCTACCATTCCCATCATTGACGCGGCCGCGCTCAAGCAGGTCACCACCAAATGCGCGACCTTCATATGCAGCAACACCACTCCATGCGTCTTAACCTTGGTGGCCAGGACAAGATGATACTACTATGGTAAAACGATGATAAGACAGTGGCACCACGGGCCACGGCTGCCTAGCTGACCAAATCAAAGGCAATTTTCTGCCGGAACCAGCTTCAATGGCGTCGGGATCAGCCGGTGGCGAATCGATGGATGGACGCCATCTTCATCGGATGATTGCCATCACCGCCACCGCGCCACCGTCGTCGCCATGGGATCTGATCGATCGATCCGAGATATGGAGAAACTGTGATCCTTCACGCGAAGCTCAATCGCGTTGTGATCACGTGATCCACCGGAGCGCCCAACGCTGGTGTAAACGATGGTCGCCACAGATGGATGATCTAGTAAAATTCTTTCACAGTGCGTACATGTGGTGTTCTGCTTCCATACGTCTTTTTTTTTTTTTTTTTTTTTTTTT] consensusID : consensus_12540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1314 fasta sequence [GTCACTCCCCACCTGTATGTACCCTTGGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACAGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAGGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTCTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA-GA-GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAAAAAA] [+] EMBL AK067848 [GTCACTCCCCACCTGTATGTACCCTTGGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACAGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAGGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTCTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA GA GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAA ] [+] EMBL CA764574 [ GTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCAATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATGAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCAGGTCTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA GA GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATGAAATAAGCAGAAAGCAGGTGTATC ] [+] EMBL AU088707 [ TTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTNTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA GA GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCNAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAAAAAA] [+] EMBL AU088684 [ TCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGANGANGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAAAA ] consensusID : consensus_12540#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [TGAAAGAACGTATAGGGGAAGGGACCATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCACGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAGCACCGATATACGTGCTGTAAGCATGTCCCTTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCACAGATGAGACTATACCTGTGGAAGACGCCTATGAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGACAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAAATCTTTGGGGAATCAAATAACAGAAACAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAACTCTATAGTAGAACCATATAAAATTTCAGGTTTGTACTAAAAAAAA] [+] EMBL BM038694 [TGAAAGAACGTATAGGGGAAGGGACCATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCACGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAGCACCGATATACGTGCTGTAAGCATGTCCCTTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCACAGATGAGACTATACCTGTGGAAGACGCCTATGAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGACAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAAATCTTTGGGGAATCAAATAACAGAAACAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAACTCTATAGTAGAACCATATAAAATTTCAGGTTTGTACTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 GGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTC 60 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 CCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCAC 120 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 CGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACG 180 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 ACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACA 240 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACAC 300 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 GGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACGGTCT 360 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 CATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTT 420 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 CAGTGGAAATGGGTAAGTTTGCTCCAGAAAACCATGTCTTCCCCCAGCAATTTCAGTTCT 480 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 TAGAAGAAGCTATAGTAATACTGCTTTAATCTTAGACTATGGGCATGGTTCTTTTTCGCA 540 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 TGAGTATGTCTTAGAATGGGGAGAATAGCTACTGTAGTCCCTAAAGTTTCTATGTAGGAT 600 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 CATTTTAGTCCCTAACCTTTTAAATAGTTCAAAGAAATCCTTAAACTTTGTCATAAGGCC 660 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 TAGAATAATCCTTGGGTCCACCAAAATCGTCATATGGATATGCCATGTCATCATTCATGC 720 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AAAATCTATGATAAATTGTCTAGTTTACCTTTATGTATATCATAGAAAAATAAATGTAAG 780 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 GGTGAATTAGACATAACCATAGGGAAAAAAATACTTTTCCTTTTTTTCACCCTTTTGACG 840 consensus_12540#1 ------------------------ATTCATTGCGGCATTTACTTTAAAGAAGCCACAACC 36 consensus_12540#2 ------------GTCACTCCCCACCTGTATGTACCCTTGGTACGGAGCGTTATGCAGCCA 48 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 TATATTTTTGCTCTTACATATACCATATATTTTTTAATTTTTCCTTTTGTTTTTTATTTT 900 consensus_12540#1 GTGAATTACAAAATCACACCTTAATTAAAAATA--ATAGGGAGAATAGCTACTTTAGTCC 94 consensus_12540#2 CTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACT 108 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 CCTATGATATATGTAAATATAAATTGGACAAATCATATAGATTTTGCATAGGAGGGTGAC 960 consensus_12540#1 CTAA--AGTTTCTCTGTAGGATCAGTTTAGTCCTTAACCTTTTAAATGGTCCAAAGAAAT 152 consensus_12540#2 CTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCA--CCGCCGGAGCCCTCCTCTGCA 166 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 ATGGCATGTCCATGTGGCGATTTTGATGGGACCAAGG--ACTATATCAGCCCATGTGACA 1018 consensus_12540#1 CCTTAACCTATGTCATAAGGCCTAGAATAGTCCTTGGGTCCACCAAAATCATCATATGGA 212 consensus_12540#2 ACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCG- 225 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AATTTAAAGGACTTGTTTGAACAATATGAAAAATTAAGGACTAAAATGGCCCAGGAGCG- 1077 consensus_12540#1 TATGCCATGTCATCATTCATGCAAAATCTATGATGAATTGTCTAATTTACCCTTACGTAT 272 consensus_12540#2 ATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGC-AGTGGTAGTAAC 284 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AAACTTTAGGGACCATCTTGGCTATTCTCCCTCTTAGAATGTACAACTAATGATGGACTG 1137 consensus_12540#1 ATCATAGAAAAATAAATATAAGGGTAAATTAGACATAACCATAGGAAAAAAAATACTTGT 332 consensus_12540#2 CAAC--AAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATC 342 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AGAC--TTGATCTTCTTGTATCTGAGGGAGGTGCTTCTGTAATTCCGTTGTTCTTTAA-- 1193 consensus_12540#1 TTTTTTACCCTTTTGAAGTATATGTTTGCTCTTACATATACCATATATTTTT-TAACTTT 391 consensus_12540#2 GTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACAGT-CTCATTCTTGACCTGAT 401 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AATGTAATCCATTATGAAATGCACTTAGTGAAGCATTATAGTACACACTATCTGACTTTT 1253 consensus_12540#1 TTCCTTTTGTTTTTTATCTTCCTATGCATAAAGGTAAATTGGACAAATCATATAGATTTT 451 consensus_12540#2 GGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATT--------TCAGTGGA 453 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 ACTTGCATAAATCTTGTTAATTGCTGTCTTTTATTGTTGCAATCAGTGCTGCTTGACAAA 1313 consensus_12540#1 GCATATGAAGGTGACATGGCATGTCTATGTGGCGATTTTGGTGGGACCAAAGACTATATT 511 consensus_12540#2 AAT---GGAGAAAGTGAAGGAGAATTCG-------AGTATGGAAACTACAGGA---AAGA 500 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 TATTTCAGAGAAAGTGAAGGAGAATTCG-------AGTATGGAAACTACAGGA---AAGA 1363 consensus_12540#1 AGCCCACATGATAAATTTAAAGGACTTGTTTGGATAATATGAAAGATTAAGGACTAAAAT 571 consensus_12540#2 GGCTGATGATTTGCACTCCGTTG--TATCATATCTTTGTAAGGAAAAGTATGATGTAACA 558 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 GGCTGATGATTTGCACTCCGTTG--TATCATATCTTTGTAAGGAAAAGTATGATGTAACA 1421 consensus_12540#1 GACCCATGAGCGAAATTTTAGAGACCATATTAGCTATTCTCTCAAAATAATAAGAAAACT 631 consensus_12540#2 GCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGAT 618 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 GCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGAT 1481 consensus_12540#1 TCTCTCAATAGCCGCC-TAAAGATAAAGTTATCACTTATCTATGGTTGACAAGTACCACC 690 consensus_12540#2 GATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAA 678 consensus_12540#3 ----------------------------------------------------TGAAAGAA 8 consensus_12540#0 GATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGA 1541 consensus_12540#1 ATTGGCTTGGCGGCTTTCAAGCTATATA-CATTTCTTGTCTATCTCGAACCAGAAAATAG 749 ** consensus_12540#2 CGTATAGGGGA---AGGATCAATTGATAGAATAAATAAAGAAGGCT-ACCTTGATGTCAA 734 consensus_12540#3 CGTATAGGGGA---AGGGACCATTGATAGAATAAATAAAGAAGGCT-ACCTTGATGTCAA 64 consensus_12540#0 CGTATAGGGGA---AGGATCAATTGATAGAATAAATAAAGAAGGCT-ACCTTGATGTCAA 1597 consensus_12540#1 AATATCAGAAATCAGCAACCGATTATTGTGCCGATCTAATTTTTCTCACGTCATTGCCAG 809 *** * * * *** * * ** ** ** * ** ** consensus_12540#2 GGATAA-------ATCA-GGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAG 786 consensus_12540#3 GGATAA-------ATCACGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAG 117 consensus_12540#0 GGATAA-------ATCA-GGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAG 1649 consensus_12540#1 TGGCAATCACCAAACCAAAACGAAAGATAACATCAGATAGTAAACTGAGAGTCGCTCGGC 869 * ** * ** * * * * * ** ** * * * * consensus_12540#2 CGG--CTCAACACCGATATACGTGCTGTAGGCA---TGTCCATTACCAAGGAATGCAGGT 841 consensus_12540#3 CGG--CTCAGCACCGATATACGTGCTGTAAGCA---TGTCCCTTACCAAGGAATGCAGGT 172 consensus_12540#0 CGG--CTCAACACCGATATACGTGCTGTAAGCA---TGTCCATTACCAAGGAATGCAGGT 1704 consensus_12540#1 TAGATCTTGCCATCAACACAACCATCTTGGCCGATCTAGCGAGTACAGTGCGATGTAGGA 929 * ** ** * * * * * * * * *** * *** *** consensus_12540#2 T-CTTCACAGTTC-ACGGTTC--AGCA--GATGAGACTATACCTGTGGAAGACGCCTATA 895 consensus_12540#3 T-CTTCACAGTTC-ACGGTTC--A-CA--GATGAGACTATACCTGTGGAAGACGCCTATG 225 consensus_12540#0 T-CTTCACAGTTC-ACGGTTC--AGCA--GATGAGACTATACCTGTGGAAGACGCCTATA 1758 consensus_12540#1 TGCACCACCCTCCTACCATTCCCATCATTGACGCGGCCGCGCTCAAGCAGGTCACCACCA 989 * * *** * * ** *** * ** ** * * * * * * * * ** consensus_12540#2 AGTTTGCGAAG--CATATACCGAATCACAAGC---TGCAAGTTA--TTGAGGGAGCAAAT 948 consensus_12540#3 AGTTTGCGAAG--CATATACCGAATCACAAGC---TGCAAGTTA--TTGAGGGA-CAAAT 277 consensus_12540#0 AGTTTGCGAAG--CATATACCGAATCACAAGC---TGCAAGTTA--TTGAGGGAGCAAAT 1811 consensus_12540#1 AATGCGCGACCTTCATATGCAGCAACACCACTCCATGCGTCTTAACCTTGGTGGCCAGGA 1049 * * **** ***** * * * *** * *** *** * * * ** consensus_12540#2 CATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCT 1008 consensus_12540#3 CATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCT 337 consensus_12540#0 CATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCT 1871 consensus_12540#1 CAAGATGATACTAC-TATGGTAAAACGATGA-TAAGACAGTGGCACCACGGGCCACGGCT 1107 ** * * ** * ** * ** ** * * * ** * *** ** consensus_12540#2 AATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTCTCTATGGGCCC---TT 1065 consensus_12540#3 AATTAGGTATAAATCTTTGGGGAATCAAATAACAGAAACAGGTGTATCCGTGTAT---AT 394 consensus_12540#0 AATTAG------------------------------------------------------ 1877 consensus_12540#1 GCCTAGCTGACCAAATCAAAGGCAATTTTCTGCCGGAACCAGCTTCAATGGCGTCGGGAT 1167 *** consensus_12540#2 CAGAAATTACTCTTTTCTCCACAGTTCTGCATGTC---TGAGAGACTGAGACAACCTCAT 1122 consensus_12540#3 TAGTG--TACCATTT----CGTAGGTCCATAT------TGAATTACTGATATGAATTGTT 442 consensus_12540#0 ------------------------TTCTGCATGTC---TGAGAGACTGAGACAACCTCAT 1910 consensus_12540#1 CAGCCGGTGGCGAATCGATGGATGGACGCCATCTTCATCGGATGATTGCCATCACCGCCA 1227 * ** * * ** * * consensus_12540#2 TCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTG 1182 consensus_12540#3 TCTTGC-AGATGTCTGTGTACC-TACAGGATTCCTGTAAA-------TATCAACTCTATA 493 consensus_12540#0 TCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTG 1970 consensus_12540#1 CCGCGCCACCGTCGTCGCCATGGGATCTGATCGATCGATCCGAGATATGGAGAAACTGTG 1287 * * * * *** * * ** * consensus_12540#2 CCTTTTCTC------CTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGC 1236 consensus_12540#3 G---TAGAA------CCATATAAAATTTCAGGTTTGTACTAAAAAAAA------------ 532 consensus_12540#0 CCTTTTCTC------CTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGC 2024 consensus_12540#1 ATCCTTCACGCGAAGCTCAATCGCGTTGTGATCACGTGATCCACCGGA-GCGCCCAACGC 1346 * * * * * * * consensus_12540#2 AGGTGTATCCGTGTAT----ATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGAT 1292 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 AGGTGTATCCGTGTAT----ATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGAT 2080 consensus_12540#1 TGGTGTAAACGATGGTCGCCACAGATGGATGATCTAGTAAAATTCTTTCACAGTGCGTAC 1406 consensus_12540#2 ATGAATTGTTTCTTGCAAAAAA-------------------------------------- 1314 consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 ATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAAACTCTA 2140 consensus_12540#1 ATGTGGTGTTCTGCTTCCATACGTCTTTTTTTTTTTTTTTTTTTTTTTTT---------- 1456 consensus_12540#2 ------------------------------------------------------------ consensus_12540#3 ------------------------------------------------------------ consensus_12540#0 TAGTAGAACCGTATAAAATTTCAGGTTTTTACTTTGTACTAAGAATTCTGCGTGCAAAAG 2200 consensus_12540#1 ------------------------------------------------------------ consensus_12540#2 ------------------------------ consensus_12540#3 ------------------------------ consensus_12540#0 GTTTCAGAGCACAACTGCTGCTGCTTCCTG 2230 consensus_12540#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||