These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 835 fasta sequence [GACGAGACAAGGGGAAAGGTT-GGAGGAAACTTTCGAGGCTGA-TTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA-CACCATCTGCAAGATCGATACTTA-CAGAACTGAAAGG-CATTCTTTA-CAGT-AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT-GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA-AGAGCGAAGCTGAT-GGAGATCAGGCAGGAACAATCA-AGACGATCGGATAGGTCAGAT-GGGGCTGAAAAAA-GGAAAAAGAAAAAGCGAAGAACA-TCCGGTGAGAGCTGAGCTTTGTGGGCGA-GGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACAAACGATATATCGGNNGNGCTCATATTGGGGCTACATGGANCACGANAGNAATTTT] [+] EMBL CA765970 [GACGAGACAAGGGGAAAGGTT GGAGGAAACTTTCGAGGCTGA TTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCCTGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGATGGGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGATGGGGGCTGAAAAAAGGGAAAAAGAAAAAGCGAAGAACA TNCGGTGAGAGCTGACCTTTGGGGGCGANGCCAAAGTAGTTTTTTTTTTTGNCGNAGCATACAAACGATATATCGGNNGNGCTCATATTGGGGCTACATGGANCACGANAGNAATTTT] [+] EMBL AU085871 [ AAGGTTNGGAGGAAACTTTCGAGGCTGATTTTAGATAGTGCTATGNCCCACAAGTATGGGCAAAAAGATGGTGCCCCTGATGAGGNTTCTGTAGGTGTTCCTGGTAGGAAACCCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACCCCTTGATCAGCACCAGG AGGACAAAATAATGGGAATGGAACTACATTTCANCCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTC AATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAAa ] [+] EMBL AY224574 [ ATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGACCA TCCGG ] [-] EMBL CB639117 [ TGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCCCCAGGAAGGACAAAATAATGGGAATGGAATTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCCAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTTTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAG ] [-] EMBL CB627649 [ CACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACAA ] [+] EMBL CB627648 [ CTTGACCTTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACA ] [+] EMBL CF327599 [ GGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTT AAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTG AAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGT ] [+] EMBL BI812295 [ ACTACGA CACCATCTGCCAGATCGATACTT CCGAACTGAAAGG CATTCTTTA CCGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACC TGCTCGCCATGGATCATATAAAAGAATTGTTGGCCCTGAGATCCGATGCTCCCTTCCGAGATGCACAGAGCGAA CTGAT GGAGATCAGGCAGGAACCATCC AGACGATCGGATAGGTCCGAT GGGGCTGAAAAAA GG AAAAGAAAAAGCGAAGAACACTCCGGTGAGA CTGAGCTTTGTGGGCGA GGCCAAGTAGTTTTTTTTTTTGTCGTAGCATACc ] [+] EMBL BI812289 [ ctgACGACCACCATCTGCAAGATCGATACTTACCAGAACTGAAAGGCCATTCTTTACCAGTGAGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCCATGGATCATATAAAAGAATTGTTGGCCCTGAGATCAGATGCTCCCTTCCGAGATGCC AGAGCGAA CTGAT GGAGATCA GCAGGAACCATCACAGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACACTCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCCAAGTAGTTTTTTTTTTTGTCGTAGCATACc ] [-] EMBL CF327598 [ TACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCAAAGTAG TTTTTTTTTTGTCGTAGCATACAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||