These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 690 fasta sequence [TGATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC-ATCTT--CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC-AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAAAAAAACAAAA] [+] EMBL AU077585 [TGATCTACAAGGTTTACCCCGATGGCACCACGGTTCTGCCGGANTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC ATCTT CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAAAA ] [+] EMBL AK067013 [ GATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC ATCTT CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGA ] [-] EMBL CB643586 [ ATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC ATCTT CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTC ] [+] EMBL BI811387 [ GGTGTCAATCTTTCCCCGTC CTGCTCCA CT CCGAGTGGGATAACTGAATTGGACGACAGGAACCAGAGGAGGCTGT CCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGT CGGCATCTGCCTCGAGTTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAAaa ] [+] EMBL AU077556 [ GGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATNAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCAaaaa ] [-] EMBL CF312035 [ GAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGT AAAAGAAGATGCTGAAGTGTACTCCAAAAAA ] [+] EMBL AU091889 [ GTTCATAAGTAAGCTCCCACTTGTAGTGCTCCATGTGGTTGNCCTTGACATTTACGAGTACCGTATNAAGTGAAANTGTACTCTTTTGTTCATNCCGGTGGGTCTCTGTACATATCNAATTCATCGGTGNTGATCTGTGNTAGCCCANCCTNAGGCTGCAAATTAGCAGAGNTGTTTGTNGTTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAANAAAACAAAA] [+] EMBL AU077406 [ AAGTAAGCNTCCACTTGTAGTGCTCCATGTGGTTGACCTTGNNATTNACGAGTACCGTATCAAGTGAAACTGTNCTCTTTTGTTNATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGNTAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAA ] consensusID : consensus_12562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [GTCAGCAAGCACAACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTTCACTTCGTCTGATGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTTGTCACATATGCAGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAAATTTTTGGAAAAGAACATGCTGAAGTGTACTCCA] [-] EMBL CB638244 [GTCAGCAAGCACAACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTTCACTTCGTCTGATGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTTGTCACATATGCAGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAAATTTTTGGAAAAGAACATGCTGAAGTGTACTCCA] consensusID : consensus_12562#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAAAAAAAAAAA] [+] EMBL AU174437 [GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12562#0 TGATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCA 60 consensus_12562#2 ------------------------------------------------------------ consensus_12562#1 ------------------------------------------------------------ consensus_12562#0 GCATCAGGCAATTCTACGGTGTCATCTTCCCGTCGCTGCTCCAGCTGCCGAGTGGGATAA 120 consensus_12562#2 ------------------------------------------------------------ consensus_12562#1 ------------------------------------------------------------ consensus_12562#0 CTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGG 180 consensus_12562#2 ------------------------------------------------------------ consensus_12562#1 -----------------------------------------------GTCAGCAAGCACA 13 consensus_12562#0 AGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGA 240 consensus_12562#2 -----------------------GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGA 37 consensus_12562#1 ACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTTCACTTCGTC-TGA 72 * *** * * *** *** consensus_12562#0 ATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATT 300 consensus_12562#2 ATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATT 97 consensus_12562#1 TGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTTGTCACATATGCA 132 * ** * ** ** * * ** ** * consensus_12562#0 GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA 360 consensus_12562#2 GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA 157 consensus_12562#1 GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA 192 ************************************************************ consensus_12562#0 GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG 420 consensus_12562#2 GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG 217 consensus_12562#1 GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG 252 ************************************************************ consensus_12562#0 AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG 480 consensus_12562#2 AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG 277 consensus_12562#1 AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG 312 ************************************************************ consensus_12562#0 TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG 540 consensus_12562#2 TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG 337 consensus_12562#1 TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG 372 ************************************************************ consensus_12562#0 TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG 600 consensus_12562#2 TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG 397 consensus_12562#1 TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG 432 ************************************************************ consensus_12562#0 CAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATG 660 consensus_12562#2 CAAATTAGCAGAAAAAAAAAAA-------------------------------------- 419 consensus_12562#1 CAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAA-ATTTTTG-GAAAAGAACATG 490 ************ * consensus_12562#0 CTGAAGTGTACTCCAAAAAAAAAAACAAAA 690 consensus_12562#2 ------------------------------ consensus_12562#1 CTGAAGTGTACTCCA--------------- 505 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||