cluster # 12565

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Oryza sativa
cluster # 12565 cluster # 12565 Sequences # 10 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12565#0 length = 971 sequences # 10
consensusID : consensus_12565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 971
fasta sequence
                              [CACGTGTACATAACTCTTTCGGTCCGGGACCCTCTCTTGTTTTTCTTCGTTGCTCGCGAGCTCTTCCCCCCTCGCCTCGCCTCCCCACCCAACAAGCCCGCGGCGGCGACTAGGGTTTTGACCCCCCGGAATCCCCCCTCCTCTCGCCGCCTCCGCCTCCGCCGCCGCCGCCTTCCTCCCCGCGCCGGCGACGATCTGCTCCTCCTCCCCCGCCGGCATCGCTGTTTCCGGATCTAGCGCAAGATGCTTCCGCTCTCGCTCCT-CAAGACCGCCCAGGGGCATCCCATGCTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGG-CCACCAGGTGTAGGCCGCGGAAGAGGAA-GAGGTGATATA-GGTACTAAGCCTGGAGGCAGAGGCATTGGGCGTGGCCA-GGATGATGGTGGCAGCAAAGGCGGTGGTGGCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGC-TTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATG-GACTG-GTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGC-CTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA]

[+] EMBL AK100819             [CACGTGTACATAACTCTTTCGGTCCGGGACCCTCTCTTGTTTTTCTTCGTTGCTCGCGAGCTCTTCCCCCCTCGCCTCGCCTCCCCACCCAACAAGCCCGCGGCGGCGACTAGGGTTTTGACCCCCCGGAATCCCCCCTCCTCTCGCCGCCTCCGCCTCCGCCGCCGCCGCCTTCCTCCCCGCGCCGGCGACGATCTGCTCCTCCTCCCCCGCCGGCATCGCTGTTTCCGGATCTAGCGCAAGATGCTTCCGCTCTCGCTCCT CAAGACCGCCCAGGGGCATCCCATGCTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGG CCACCAGGTGTAGGCCGCGGAAGAGGAA GAGGTGATATA GGTACTAAGCCTGGAGGCAGAGGCATTGGGCGTGGCCA GGATGATGGTGGCAGCAAAGGCGGTGGTGGCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGC TTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATG GACTG GTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGC CTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTActttgacc                                   ]
[+] EMBL AU076122             [                                                                     gcaggagTCGCCTCCCCACCCAACAAGCCCGCGGCGGCGACTAGGGTTTTGACCCCCCGGAATCCCCCCTCCTCTCGCCGCCTCCGCCTCCGCCGCCGCCGCCTTCCTCCCCGCGCCGGCGACGATCTGCTCCTCCTCCCCCGCCGGCATCGCTGTTTCCGGATCTAGCGCAAGATGCTTCCGCTCTCGCTCCT CAAGACCGCCCAGGGGCATCCCATGCTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGG CCACCAGGTGTAGGCCGCGGAAGAGGAA GAGGTGATATA GGTACTAAGCCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU078354             [                                                                                                  CGCGGCGGCGACTAGGGTTTTNNACCCCCGGAATCCCCCCTCCTCTCGCCGCCTCCGCCTCCGCCGCCGCCGCCTTCCTCCCCGCGCCGGCGACGATCTGCTCCTCCTCCCCCGCCGGCATCGCTGTTTCCGGATCTAGCGCAAGATGCTTCCGCTCTCGCTCCT CAAGACCGCCCAGGGGCATCCCATGCTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C28016               [                                                                                                                                                                                                                                     ncgtnagnCGCAANANACTTCCNCTCTCATTCCT CAAGACCGCCCAGGGGCATCCCATGCTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTNCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGANTGTTACATCCGTGGGAACACCATCAAGTATCTTCGGNTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGG CCACCAGGTGTAGGCCGCGGAAGAGGAANAAGGTGATATAGGGTACT                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU078355             [                                                                                                                                                                                                                                                    atCTTTCCCTTTCGNTCCTNAAAGACCGCCCA GGGCATCCCATGCTCGTGGA CTTAAGACCGGCGAGACGTACAACGGGCACTTGGTGAACTNCGACACGTGGATGAACATCCA CTCCGGGAGGTTATTTCCNCCTCAAAGGATGGTGATAA TTTTGGAGGATGCCAGAATGTTACANCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGG CCACCAGGTNTAGGCCGCGGAAGAGGAA GAGGTGATATA GGTACTAAGCCTGGAGGCAGAGGCATTGGGCGTGGCCA GGATGATGGTGGCAGCAAAGGCGGTGGTGNCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGCTTTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATG GACTG GTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGC CTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTAAAAAAAAAAAAAAAAAAAAAA                      ]
[+] EMBL C99052               [                                                                                                                                                                                                                                                                                                                                                           GGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGG CCACCAGGTGTAGGCCGCGGAAGAGGAA GAGGTGATATA GGTACTAAGCCTGGAGGCAGAGGCATTGGGCGTGGCCA GGATGATGGTGGCAGCAAAGGCGGTGGTGGCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGAC TGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGC TTTTTTAAGGC TTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATN GACTG GTGGAGTAAGCATTGCTTT CTTTATCA TTTGTGG                                                                                                                                                                       ]
[+] EMBL C99053               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGACTTCAAAGAGCAGATCAGATAGGAGGCCCACCAGGTGTAGGCCGCGGAAGAGGAA GAGGTGATATA GGTACTAAGCCTGGAGGCAGAGGCATTGGGCGTGGCCA GGATGATGGTGGCAGCAAAGGCGGTGGTGNCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGC TTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATG GACTG GTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGC CTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTAAAAA                                       ]
[+] EMBL BI805476             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGNCATTGGGCANTGCCATGGATGATGGT GCAGCNAA GCGGTGGTGTCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGCCCG GTACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGC TTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATGCNCCTGCCCCGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGCACTGTCTCGAAACAATTTGTTTGATGTCTGCACCCTCGACTATATTGAATATTATTGTGGTTATTAAAAAAAAAA                                  ]
[+] EMBL AU076123             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGANAGGGAAGGTCNCTTGTGGGAATGCCGC TTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATG GACTG GTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAANAGGCAGCGGTTGGC CTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA]
[+] EMBL AU078296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGAGGAATTGGAGGTAAAGGTGGCATCAAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGCTTTTTTTAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATG GACTG GTGGAGTAAGCATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTACCAGTGAAGAGGCAGCGGTTGGC CTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCGACTATATTGAATATTATTGTGGTTATTAAAAAA                                      ]




>consensus_12565#0
CACGTGTACATAACTCTTTCGGTCCGGGACCCTCTCTTGTTTTTCTTCGTTGCTCGCGAG
CTCTTCCCCCCTCGCCTCGCCTCCCCACCCAACAAGCCCGCGGCGGCGACTAGGGTTTTG
ACCCCCCGGAATCCCCCCTCCTCTCGCCGCCTCCGCCTCCGCCGCCGCCGCCTTCCTCCC
CGCGCCGGCGACGATCTGCTCCTCCTCCCCCGCCGGCATCGCTGTTTCCGGATCTAGCGC
AAGATGCTTCCGCTCTCGCTCCTCAAGACCGCCCAGGGGCATCCCATGCTCGTGGAGCTT
AAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCAC
CTCCGGGAGGTTATTTGCACCTCAAAGGATGGTGATAAGTTTTGGAGGATGCCAGAATGT
TACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGGTGATTGACAAGGTC
CAGGAAGAGACTTCAAAGAGCAGATCAGATAGGAGGCCACCAGGTGTAGGCCGCGGAAGA
GGAAGAGGTGATATAGGTACTAAGCCTGGAGGCAGAGGCATTGGGCGTGGCCAGGATGAT
GGTGGCAGCAAAGGCGGTGGTGGCCGTGGAAGGGGAGGAATTGGAGGTAAAGGTGGCATC
AAAGGTGGGGGCCGCGGACGTGGGTGAGAGGGAAGGTCACTTGTGGGAATGCCGCTTTTT
TAAGGCTTTGTGTCACATAGATTGCTTTAGGAGGGTGAAGAATGGACTGGTGGAGTAAGC
ATTGCTTTGCTTTATCATTTTGTGGTATGACCGAAAAATGTTTCATGGGTTCAGTAGTTA
CCAGTGAAGAGGCAGCGGTTGGCCTGTCTCGAAACAATTTGTTTGATGTCTGGACCCTCG
ACTATATTGAATATTATTGTGGTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACAAAAAAAAA
clustalw multiple alignements is not computed in this case