These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 3343 fasta sequence [CATTTGATCCCCCTCCACTCCATTCTCTCCTCCTCCTCTCCCACCATAATGGCCAAGCTCCCCTCCCGCTCCCCACTCCTGCTCCCGCCTCTCCTCCTCCTCCTCCTCCTCAGCCGCCGCGTCGCCTCCTCCTCCACCGCCGCCGCCGCCGCCGCAGCGCGGTCTGAGTGAAGTGAGGTTCTTGGGTGGAAGCGAAGGAGAAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGGATTAAGGATGGAGGTTGACCCATCGTCGTCTTTGCCGGGCGCGGGGGAAGGAGGAGGAGGAGGAATCGGCGGCGGGGGTGGGGATTTGTGGCCGTTCGACTCGCTCACCACGTCGCTGCTGTTCTCGTCGGTGTCGGCCTCACCGCAGCCGCTGCCGGCC---TCGTCGTCGTGGCTCACGCCGCCCTCGCCGCTGTGGCTGTTCGACGAGCGCCAGCTGCTCCCGCTCGACATGGGCGCCCCCGCTGCCCCCGCCACCGCTCCGCCCGCCGAGGCCGCCGCCGTGGTCGAGGAAGTCCATCGGACCCGCTCCGGGAATTCTGACACGACTAGTAAGAGGGTTGATCAGATTAATAGCAAATGGCAGTTTCACCTATCTATTGATGATAACACGGACAGCTCATGCTTGTTTAAGGAGAGGCTTACACAGGCTCTTAGATACTTCAAGGAGTCCACAGATCAGCATCTGCTGGTTCAAGTTTGGGCACCGGTTAAGAGTGGAGACCGGTATGTGCTTACTACTTCAGGACAGCCCTTTGTACTTGACCAGCAGAGTATTGGGCTTCTTCAGTACAGGGCTGTATCCATGATGTACATGTTCTCGGTGGATGGAGAAAATGCTGGAGAGCTGGGGCTACCTGGGCGTGTGTACAAACAAAAGGTTCCTGAGTGGACACCGAATGTGCAGTATTATAGCAGTACTGAGTACCCACGCCTTAACCATGCAATCAGTTACAATGTTCATGGTACTGTAGCCTTGCCTGTTTTTGATCCTTCTGTTCAAAATTGTATTGCGGTTGTTGAACTTATAATGACATCAAAGAAGATCAACTATGCTGGTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATCTCAAAAGCACTGAGATATTGGACCATCCGAATGTCCAGATATGCAATGAAGGCCGCCAATCTGCTTTGGTGGAGATACTGGAGATCTTGACGGTCGTATGTGAAGAGCACAAGCTTCCTTTGGCTCAAACCTGGGTTCCTTGCAAGTATCGAAGTGTACTGGCACATGGCGGTGGTGTTAAGAAGAGTTGTTTGAGCTTTGATGGAAGTTGCATGGGGGAGGTTTGCATGTCAACCAGTGATGTGGCATTTCATGTTATCGATGCTCATATGTGGGGATTTAGAGATGCATGTGTAGAACATCACCTACAGAAGGGACAAGGAGTTTCTGGGAAGGCTTTTATCTATCGTCGACCTTGCTTTTCTAAAGATATCAGTCAATTCTGCAAGTTGGAGTATCCCCTTGTACACTATGCTCGAATGTTTGGTCTAGCTGGCTGCTTTGCAATATGTTTGCAAAGTATGTATACTGGAGATGATGATTATATATTAGAGTTCTTCCTGCCACCAAATTGCAGGAACGAAGATGATCAAAATGCCTTGTTGGAGTCCATATTAGCTCGAATGAAGAAGTGCCTTCGTACCCTAAAGGTAGTTGGCAACGGAGACACCAATGAAGTTTGTCTGCAAATAAGTAATGTGCTAATAATTGAGACTGAAGATTTGAAGACAAATGTGCACTTTGAGAATTCTGAAGGTTGCTTTCGTGAATCGCCTGAAAGTAATGGAAGCCAAAGAGTCCACGAGGTTGATAATGATGGCAACAAAGTTTCAATCATGTCAGAGAGACATTTGCTAGCTGATGACAACTCTCAAAACAATGGGGCATCTGTTGGCAGGCCAAATGGTAGTGGTGCTTCTGATTCGCTTCACAAAAGTAATAAACCCCCTGAAAGGAGACGAGGAAAAGCTGGAAAAACAATCAGCTTAGATGTTCTTCAGCAATATTTCTCAGGAAGCCTAAAAAATGCAGCAAAAAGCCTTGGTGTATGTCCCACAACCATGAAACGCATCTGCAGGCAACATGGGATTTCTCGTTGGCCATCTCGAAAAATTAACAAGGTCAACCGGTCTCTCTCAAAACTAAAGCAGGTAATTGAGTCTGTTCAAGGCTCAGATGCGGCATTTAATCTCACGTCTATCACAGGTCCTCTCCCTATTCCTGTTGGACCTTCATCAGATTCTCAGAATCTAGAGAAAGCAAGTCCAAATAAAGTTGCAGAACTTTCAAATCTGGCTGTTGAGGGGGACAGAGATTCATCCTTGCAAAAGCCAATAGAAAATGACAACTTAGCTATATTGATGTCACAGCAAGGGTTTATAGGTGCAAACAATAACTTGCAACTTGAAGCAGACAAAGCTTCTCACTCGAGAAGCTCATCTGGAGAAGGCAGTATAAACTCACGTACCTCAGAGGCCTCATGCCATGGAAGTCCTGCAAACCAGACATTTGTTTGCAAGCCAATTGCATCGACGTTCGCTGAACCACAATTAATTCCAGAGGCGTTTACTAAAGAGCCCTTTCAAGAACCAGCACTACCGCTTTCCAGGATGCTCATTGAGGATTCTGG-AAGTTCCAAAGATTTGAAGAATCTCTTCACTTCAGCAGTT-GATCAACCATTTTTAGCACGTTCAAGCAATTTGGCGCTGATGCAAAATTCAGGGACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTGTCAGGTTCCGCTTCCCATGTTCCGGTAGCGTTACTGCA-TTGAAAGATGAAGTAGCCAAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAG-CCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGTTAATTGGTGTAATACTAATATCTTCGCTGTCCAGAAGAAAAGAAAAAAAA] [+] EMBL AK067319 [CATTTGATCCCCCTCCACTCCATTCTCTCCTCCTCCTCTCCCACCATAATGGCCAAGCTCCCCTCCCGCTCCCCACTCCTGCTCCCGCCTCTCCTCCTCCTCCTCCTCCTCAGCCGCCGCGTCGCCTCCTCCTCCACCGCCGCCGCCGCCGCCGCAGCGCGGTCTGAGTGAAGTGAGGTTCTTGGGTGGAAGCGAAGGAGAAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGGATTAAGGATGGAGGTTGACCCATCGTCGTCTTTGCCGGGCGCGGGGGAAGGAGGAGGAGGAGGAATCGGCGGCGGGGGTGGGGATTTGTGGCCGTTCGACTCGCTCACCACGTCGCTGCTGTTCTCGTCGGTGTCGGCCTCACCGCAGCCGCTGCCGGCC TCGTCGTCGTGGCTCACGCCGCCCTCGCCGCTGTGGCTGTTCGACGAGCGCCAGCTGCTCCCGCTCGACATGGGCGCCCCCGCTGCCCCCGCCACCGCTCCGCCCGCCGAGGCCGCCGCCGTGGTCGAGGAAGTCCATCGGACCCGCTCCGGGAATTCTGACACGACTAGTAAGAGGGTTGATCAGATTAATAGCAAATGGCAGTTTCACCTATCTATTGATGATAACACGGACAGCTCATGCTTGTTTAAGGAGAGGCTTACACAGGCTCTTAGATACTTCAAGGAGTCCACAGATCAGCATCTGCTGGTTCAAGTTTGGGCACCGGTTAAGAGTGGAGACCGGTATGTGCTTACTACTTCAGGACAGCCCTTTGTACTTGACCAGCAGAGTATTGGGCTTCTTCAGTACAGGGCTGTATCCATGATGTACATGTTCTCGGTGGATGGAGAAAATGCTGGAGAGCTGGGGCTACCTGGGCGTGTGTACAAACAAAAGGTTCCTGAGTGGACACCGAATGTGCAGTATTATAGCAGTACTGAGTACCCACGCCTTAACCATGCAATCAGTTACAATGTTCATGGTACTGTAGCCTTGCCTGTTTTTGATCCTTCTGTTCAAAATTGTATTGCGGTTGTTGAACTTATAATGACATCAAAGAAGATCAACTATGCTGGTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATCTCAAAAGCACTGAGATATTGGACCATCCGAATGTCCAGATATGCAATGAAGGCCGCCAATCTGCTTTGGTGGAGATACTGGAGATCTTGACGGTCGTATGTGAAGAGCACAAGCTTCCTTTGGCTCAAACCTGGGTTCCTTGCAAGTATCGAAGTGTACTGGCACATGGCGGTGGTGTTAAGAAGAGTTGTTTGAGCTTTGATGGAAGTTGCATGGGGGAGGTTTGCATGTCAACCAGTGATGTGGCATTTCATGTTATCGATGCTCATATGTGGGGATTTAGAGATGCATGTGTAGAACATCACCTACAGAAGGGACAAGGAGTTTCTGGGAAGGCTTTTATCTATCGTCGACCTTGCTTTTCTAAAGATATCAGTCAATTCTGCAAGTTGGAGTATCCCCTTGTACACTATGCTCGAATGTTTGGTCTAGCTGGCTGCTTTGCAATATGTTTGCAAAGTATGTATACTGGAGATGATGATTATATATTAGAGTTCTTCCTGCCACCAAATTGCAGGAACGAAGATGATCAAAATGCCTTGTTGGAGTCCATATTAGCTCGAATGAAGAAGTGCCTTCGTACCCTAAAGGTAGTTGGCAACGGAGACACCAATGAAGTTTGTCTGCAAATAAGTAATGTGCTAATAATTGAGACTGAAGATTTGAAGACAAATGTGCACTTTGAGAATTCTGAAGGTTGCTTTCGTGAATCGCCTGAAAGTAATGGAAGCCAAAGAGTCCACGAGGTTGATAATGATGGCAACAAAGTTTCAATCATGTCAGAGAGACATTTGCTAGCTGATGACAACTCTCAAAACAATGGGGCATCTGTTGGCAGGCCAAATGGTAGTGGTGCTTCTGATTCGCTTCACAAAAGTAATAAACCCCCTGAAAGGAGACGAGGAAAAGCTGGAAAAACAATCAGCTTAGATGTTCTTCAGCAATATTTCTCAGGAAGCCTAAAAAATGCAGCAAAAAGCCTTGGTGTATGTCCCACAACCATGAAACGCATCTGCAGGCAACATGGGATTTCTCGTTGGCCATCTCGAAAAATTAACAAGGTCAACCGGTCTCTCTCAAAACTAAAGCAGGTAATTGAGTCTGTTCAAGGCTCAGATGCGGCATTTAATCTCACGTCTATCACAGGTCCTCTCCCTATTCCTGTTGGACCTTCATCAGATTCTCAGAATCTAGAGAAAGCAAGTCCAAATAAAGTTGCAGAACTTTCAAATCTGGCTGTTGAGGGGGACAGAGATTCATCCTTGCAAAAGCCAATAGAAAATGACAACTTAGCTATATTGATGTCACAGCAAGGGTTTATAGGTGCAAACAATAACTTGCAACTTGAAGCAGACAAAGCTTCTCACTCGAGAAGCTCATCTGGAGAAGGCAGTATAAACTCACGTACCTCAGAGGCCTCATGCCATGGAAGTCCTGCAAACCAGACATTTGTTTGCAAGCCAATTGCATCGACGTTCGCTGAACCACAATTAATTCCAGAGGCGTTTACTAAAGAGCCCTTTCAAGAACCAGCACTACCGCTTTCCAGGATGCTCATTGAGGATTCTGG AAGTTCCAAAGATTTGAAGAATCTCTTCACTTCAGCAGTT GATCAACCATTTTTAGCACGTTCAAGCAATTTGGCGCTGATGCAAAATTCAGGGACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTGTCAGGTTCCACTTCCCATGTTCCGGTAGCGTTACTGCA TTGAAAGATGAAGTAGCCAAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAG CCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGTTAATTGGTGTAATACTAATATC ] [+] EMBL CB683573 [ CCTCCTCTTCCGCCGCGTCGCCTCCTCCTCCACCGCCGCCGCCGCCGCCGCAGCGCGGTCTGAGTGAAGTGAGGTTCTTGGGTGGAAGCGAAGGAGAAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGGATTAAGGATGGAGGTTGACCCATCGTCGTCTTTGCCGGGCGCGGGGGAAGGAGGAGGAGGAGGAATCGGCGGCGGGGGTGGGGATTTGTGGCCGTTCGACTCGCTCACCACGTCGCTGCTGTTCTCGTCGGTGTCGGCCTCACCGCAGCCGCTGCCGGCCTCGTCGTCGTCGTGGCTCACGCCGCCCTCGCCGCTGTGGCTGTTCGACGAGCGCCAGCTGCTCCCGCTCGACATGGGCGCCCCCGCTGCCCCCGCCACCGCTCCGCCCGCCGAGGCCGCCGCCGTGGTCGAGGAAGTCCATCGGACCCGCTCCGGGAATTCTGACACGACTAGTAAGAGGGTTGATCAGATTAATAGCAAATGGCAGTTTCACCTATCTATTGATGATAACACGGACAGCTCATGCTTGTTTAAGGAGAGGCTTACACAGGCTCTTAGATACTTCAAGGAGTCCACAGATCAGCATCTGCTGGTTCAAGTTTGGGCACCGGTTAAGAGTGGAGACCGGTATGTGCTTACTACTTCAGGACAGCCCTTTGTACTTGACCAGCAGAGTATTGGGCTTCTTCAGTACAGGGCTGTATCCATGATGTACATGTT ] [+] EMBL CB676764 [ TTCAATCATGTCAGAGAGACATTTGCTAGCTGATGACAACTCTCAAAACAATGGGGCATCTGTTGGCAGGCCAAATGGTAGTGGTGCTTCTGATTCGCTTCACAAAAGTAATAAACCCCCTGAAAGGAGACGAGGAAAAGCTGAAAAAACAATCAGCTTAGATGTTCTTCAGCAATATTTCTCAGGAAGCCTAAAAAATGCAGCAAAAAGCCTTGGTGTATGTCCCACAACCATGAAACGCATCTGCAGGCAACATGGGATTTCTCGTTGGCCATCTCGAAAAATTAACAAGGTCAACCGGTCTCTCTCAAAACTAAAGCAGGTAATTGAGTCTGTTCAAGGCTCAGATGCGGCATTTAATCTCACGTCTATCACAGGTCCTCTCCCTATTCCTGTTGGACCTTCATCAGATTCTCAGAATCTAGAGAAAGCAAGTCCAAATAAAGTTGCAGAACTTTCAAATCTGGCTGTTGAGGGGGACAGAGATTCATCCTTGCAAAAGCCAATAGAAAATGACAACTTAGCTATATTGATGTCACAGCAAGGGTTTATAGATGCAAACAATAACTTGCAACTTGAAGCAGACAAAGCTTCTCACTCGAGAAGCTCATCTGGAGAAGGCAGTATAAACTCACGTACCTCAGAGGCCTCATGCCATGGAAGTCCTGCAAACCAGACATTTGTTTGCAAGCCAATTGCATCGACGTTCGCTGAACCACAATTAATTCCAGAGGCGTTTACTANAGAGCCCTTTCAAGAA CAGCACTACCGCTTTCCA GATGCTCATTGAGGATTCTGGAAAGTT CAAAGATTTGAAGAATCTCTTCACTTCAGCAGTT GAT ] [+] EMBL AK061701 [ AACTCACGTACCTCAGAGGCCTCATGCCATGGAAGTCCTGCAAACCAGACATTTGTTTGCAAGCCAATTGCATCGACGTTCGCTGAACCACAATTAATTCCAGAGGCGTTTACTAAAGAGCCCTTTCAAGAACCAGCACTACCGCTTTCCAGGATGCTCATTGAGGATTCTGG AAGTTCCAAAGATTTGAAGAATCTCTTCACTTCAGCAGTT GATCAACCATTTTTAGCACGTTCAAGCAATTTGGCGCTGATGCAAAATTCAGGGACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTGTCAGGTTCCGCTTCCCATGTTCCGGTAGCGTTACTGCA TTGAAAGATGAAGTAGCCAAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAG CCC ] [-] EMBL CB683160 [ AGTCNTGCAAACCAGACATTTGTTTGCAAGCCAATTGCATCGACGTTCGCTGAACCACAATTAATTCCAGAGGCGTTTACTAAAGAGCCCTTTCAAGAACCAGCACTACCGCTTTCCAGGATGCTCATTGAGGATTCTGG AAGTTCCAAAGATTTGAAGAATCTCTTCACTTCAGCAGTT GATCAACCATTTTTAGCACGTTCAAGCAATTTGGCGCTGATGCAAAATTCAGGGACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTGTCAGGTTCCGCTTCCCATGTTCCGGTAGCGTTACTGCA TTGAAAGATGAAGTAGCCAAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAG CCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGAAGATTGGTGTAATACTAATATCTTCGCTGTCCAAAATAAAAGA ] [-] EMBL CB676765 [ GAACCAGCACTACCGCTTTCCAGGATGCTCATTGAGGATTCTGG AAGTTCCAAAGATTTGAAGAATCTCTTCACTTCAGCAGTTGGATCAACCATTTTTAGCACGTTCAAGCAATTTGGCGCTGATGCAAAATTCAGGGACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTGTCAGGTTCCGCTTCCCATGTTCCGGTAGCGTTACTGCA TTGAAAGATGAAGTAGCCAAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAG CCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGTTAATTGGTGTAATACTAATATTTAGGGTGTCCAGAAGt ] [+] EMBL BM419548 [ AGCGTTACTGCATTTGAAAGATGAAGTACCCCAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCAAGTATCTCGACGATGATCATGAGTGGGTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACCCCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCNAAACGGCACTTGTAGTCAATACTGTACATATTAAGCCCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTAAAAAaaaaa ] [+] EMBL AU057816 [ GCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATACTGTACATATTAAG CCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGTTAATTGGTGTAATACTAATATCTTCGCTGTCCAGAAAAAAAAAAAAAAAA] consensusID : consensus_12570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 670 fasta sequence [TCCCACAGATTTGAAAATCTCTCCACCTTCACCAACTTTGACCACCANTTTACACTCAACCAATTTGGCTCTGATCAATTCAGGCGGTGACCATAAAGGCTACTTTAAGGAAGACATGTCAGGTTCCCCTTCCCATGTTCCGGTAGCGTTACTGCATTGAAAGATGAAGTAGCCCAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCACAGTATCTCGACGATGATCNTGAGTGGGTGAAGTTAGCATGCACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCA-TGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCA-TTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCA-CTTGTAGTCAATACTGTACATATTAAGCCCTTGGTGCTGGAAAATTCTGATGTT-CAAGTTACAAAGG-TTAATTGGTGTAATACTAATATCTTCGNTGTCCAGAAGTCGATTAGTTTGGAGGCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI807170 [TCCCACAGATTTGAAAATCTCTCCACCTTCACCAACTTTGACCACCANTTTACACTCAACCAATTTGGCTCTGATCAATTCAGGCGGTGACCATAAAGGCTACTTTAAGGAAGACATGTCAGGTTCCCCTTCCCATGTTCCGGTAGCGTTACTGCATTGAAAGATGAAGTAGCCCAAAGGCTAAGGATGGATGTTGGCATGTTTGATATCACAGTATCTCGACGATGATCNTGAGTGGGTGAAGTTAGCATGCACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTCATCAGGCTGTTGGTTAGCGATGTTGCGGCACCCCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCCTTTTCGTTCCACTGGGTGCANACATGTTCTGCGAGGTCAGTCTCCCCTGTTGTTAATCTAGTTCTCTTGCTAGATACCCGTAGCTACTTCACTTGTGTTTGATTATTGTATCCATTTTTGGTTCGAATACATGTACTTGTNCCAAACGGCACCTTGTAGTC ATACTGTACATATTAAGCCCTTGGTGCTGGAAAATTCTGATGTTCCCAGTTACCAAGG T ] [+] EMBL C28029 [ TTAGCNATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCNTTCCA TGGGTGCATACATGTTCTGCNAGGTCAGTNTCACCTGTTGTNAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCA TTGTNTTTNATTATTGTATCANTTTTNGGTTCGANTACATGTACTTNTGCAAAACGGCA CTTGTAGTCAATACTGTACATATTAAGCCCTTGGTGCTGGAAAATTCTGATGTT CAAGTTACAAAGGNTTAATTGGTGTAATACTAATATCTTCGNTG ] [+] EMBL AU082632 [ TAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGTTGATAATTCAGGTCAGCATTTTCGTTCCA TGGGTGCATACATGTTCTGCGAGGTCAGTCTCACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCA TTGTGTTTGATTATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCA CTTGTAGTCAATACTGTACATATTAAGCCCTTGGTGCTGGAAAATTCTGATGTT CAAGTTACAAAGG TTAATTGGTGTAATACTAATATCTTCGCTGTCCAGAAGTCGATTAGTTTGGAGGCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12570#0 CATTTGATCCCCCTCCACTCCATTCTCTCCTCCTCCTCTCCCACCATAATGGCCAAGCTC 60 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CCCTCCCGCTCCCCACTCCTGCTCCCGCCTCTCCTCCTCCTCCTCCTCCTCAGCCGCCGC 120 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GTCGCCTCCTCCTCCACCGCCGCCGCCGCCGCCGCAGCGCGGTCTGAGTGAAGTGAGGTT 180 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CTTGGGTGGAAGCGAAGGAGAAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGG 240 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 ATTAAGGATGGAGGTTGACCCATCGTCGTCTTTGCCGGGCGCGGGGGAAGGAGGAGGAGG 300 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 AGGAATCGGCGGCGGGGGTGGGGATTTGTGGCCGTTCGACTCGCTCACCACGTCGCTGCT 360 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GTTCTCGTCGGTGTCGGCCTCACCGCAGCCGCTGCCGGCCTCGTCGTCGTGGCTCACGCC 420 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GCCCTCGCCGCTGTGGCTGTTCGACGAGCGCCAGCTGCTCCCGCTCGACATGGGCGCCCC 480 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CGCTGCCCCCGCCACCGCTCCGCCCGCCGAGGCCGCCGCCGTGGTCGAGGAAGTCCATCG 540 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GACCCGCTCCGGGAATTCTGACACGACTAGTAAGAGGGTTGATCAGATTAATAGCAAATG 600 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GCAGTTTCACCTATCTATTGATGATAACACGGACAGCTCATGCTTGTTTAAGGAGAGGCT 660 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TACACAGGCTCTTAGATACTTCAAGGAGTCCACAGATCAGCATCTGCTGGTTCAAGTTTG 720 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GGCACCGGTTAAGAGTGGAGACCGGTATGTGCTTACTACTTCAGGACAGCCCTTTGTACT 780 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGACCAGCAGAGTATTGGGCTTCTTCAGTACAGGGCTGTATCCATGATGTACATGTTCTC 840 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GGTGGATGGAGAAAATGCTGGAGAGCTGGGGCTACCTGGGCGTGTGTACAAACAAAAGGT 900 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TCCTGAGTGGACACCGAATGTGCAGTATTATAGCAGTACTGAGTACCCACGCCTTAACCA 960 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGCAATCAGTTACAATGTTCATGGTACTGTAGCCTTGCCTGTTTTTGATCCTTCTGTTCA 1020 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 AAATTGTATTGCGGTTGTTGAACTTATAATGACATCAAAGAAGATCAACTATGCTGGTGA 1080 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATCTCAAAAGCACTGAGATATTGGA 1140 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CCATCCGAATGTCCAGATATGCAATGAAGGCCGCCAATCTGCTTTGGTGGAGATACTGGA 1200 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GATCTTGACGGTCGTATGTGAAGAGCACAAGCTTCCTTTGGCTCAAACCTGGGTTCCTTG 1260 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CAAGTATCGAAGTGTACTGGCACATGGCGGTGGTGTTAAGAAGAGTTGTTTGAGCTTTGA 1320 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGGAAGTTGCATGGGGGAGGTTTGCATGTCAACCAGTGATGTGGCATTTCATGTTATCGA 1380 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGCTCATATGTGGGGATTTAGAGATGCATGTGTAGAACATCACCTACAGAAGGGACAAGG 1440 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 AGTTTCTGGGAAGGCTTTTATCTATCGTCGACCTTGCTTTTCTAAAGATATCAGTCAATT 1500 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CTGCAAGTTGGAGTATCCCCTTGTACACTATGCTCGAATGTTTGGTCTAGCTGGCTGCTT 1560 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGCAATATGTTTGCAAAGTATGTATACTGGAGATGATGATTATATATTAGAGTTCTTCCT 1620 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 GCCACCAAATTGCAGGAACGAAGATGATCAAAATGCCTTGTTGGAGTCCATATTAGCTCG 1680 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 AATGAAGAAGTGCCTTCGTACCCTAAAGGTAGTTGGCAACGGAGACACCAATGAAGTTTG 1740 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TCTGCAAATAAGTAATGTGCTAATAATTGAGACTGAAGATTTGAAGACAAATGTGCACTT 1800 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGAGAATTCTGAAGGTTGCTTTCGTGAATCGCCTGAAAGTAATGGAAGCCAAAGAGTCCA 1860 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CGAGGTTGATAATGATGGCAACAAAGTTTCAATCATGTCAGAGAGACATTTGCTAGCTGA 1920 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGACAACTCTCAAAACAATGGGGCATCTGTTGGCAGGCCAAATGGTAGTGGTGCTTCTGA 1980 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TTCGCTTCACAAAAGTAATAAACCCCCTGAAAGGAGACGAGGAAAAGCTGGAAAAACAAT 2040 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 CAGCTTAGATGTTCTTCAGCAATATTTCTCAGGAAGCCTAAAAAATGCAGCAAAAAGCCT 2100 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGGTGTATGTCCCACAACCATGAAACGCATCTGCAGGCAACATGGGATTTCTCGTTGGCC 2160 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 ATCTCGAAAAATTAACAAGGTCAACCGGTCTCTCTCAAAACTAAAGCAGGTAATTGAGTC 2220 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGTTCAAGGCTCAGATGCGGCATTTAATCTCACGTCTATCACAGGTCCTCTCCCTATTCC 2280 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGTTGGACCTTCATCAGATTCTCAGAATCTAGAGAAAGCAAGTCCAAATAAAGTTGCAGA 2340 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 ACTTTCAAATCTGGCTGTTGAGGGGGACAGAGATTCATCCTTGCAAAAGCCAATAGAAAA 2400 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TGACAACTTAGCTATATTGATGTCACAGCAAGGGTTTATAGGTGCAAACAATAACTTGCA 2460 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 ACTTGAAGCAGACAAAGCTTCTCACTCGAGAAGCTCATCTGGAGAAGGCAGTATAAACTC 2520 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 ACGTACCTCAGAGGCCTCATGCCATGGAAGTCCTGCAAACCAGACATTTGTTTGCAAGCC 2580 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 AATTGCATCGACGTTCGCTGAACCACAATTAATTCCAGAGGCGTTTACTAAAGAGCCCTT 2640 consensus_12570#1 ------------------------------------------------------------ consensus_12570#0 TCAAGAACCAGCACTACCGCTTTCCAGGATGCTCATTGAGGATTCTGGAAGTTCCAAAGA 2700 consensus_12570#1 ---------------------------------------------------TCCCACAGA 9 * *** *** consensus_12570#0 TTTGAAGAATCTCTTCAC-TTCAGCAGTTGATCAACCATTTTTAGCACGTTCAAGCAATT 2759 consensus_12570#1 TTTGAA-AATCTCTCCACCTTCACCAACT--TTGACCACCANTT-TACACTCAACCAATT 65 ****** ******* *** **** ** * * **** * ** **** ***** consensus_12570#0 TGGCGCTGATGCAAAATTCAGGGACGGTGACCATAAAGGCTAGCTTTAAGGAAGACATTG 2819 consensus_12570#1 TGGCTCTGATC---AATTCAGG--CGGTGACCATAAAGGCTA-CTTTAAGGAAGACAT-G 118 **** ***** ******** ****************** *************** * consensus_12570#0 TCAGGTTCCGCTTCCCATGTTCCGGTAGCGTTACTGCATTGAAAGATGAAGTAGCCAAAA 2879 consensus_12570#1 TCAGGTTCCCCTTCCCATGTTCCGGTAGCGTTACTGCATTGAAAGATGAAGTAGCCCAAA 178 ********* ********************************************** *** consensus_12570#0 GGCTAAGGATGGATGTTGGCATGTTTGATATCA-AGTATCTCGACGATGATCATGAGTGG 2938 consensus_12570#1 GGCTAAGGATGGATGTTGGCATGTTTGATATCACAGTATCTCGACGATGATCNTGAGTGG 238 ********************************* ****************** ******* consensus_12570#0 GTGAAGTTAGCATGCAACGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTC 2998 consensus_12570#1 GTGAAGTTAGCATGCA-CGCGGACTTGGAAGAATGCATGGAGATCTCTGGTAGCCATGTC 297 **************** ******************************************* consensus_12570#0 ATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGT 3058 consensus_12570#1 ATCAGGCTGTTGGTTAGCGATGTTGCGGCACACCTTGGTAGTTCCTGTGGAAGCTCAGGT 357 ************************************************************ consensus_12570#0 TGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCT 3118 consensus_12570#1 TGATAATTCAGGTCAGCATTTTCGTTCCATGGGTGCATACATGTTCTGCGAGGTCAGTCT 417 ************************************************************ consensus_12570#0 CACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATT 3178 consensus_12570#1 CACCTGTTGTTAATCTAGTTCTCTTGCTAGATAGCAGTAGCTACTTCATTGTGTTTGATT 477 ************************************************************ consensus_12570#0 ATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATA 3238 consensus_12570#1 ATTGTATCAATTTTTGGTTCGAATACATGTACTTGTGCAAAACGGCACTTGTAGTCAATA 537 ************************************************************ consensus_12570#0 CTGTACATATTAAGCCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGTTAATT 3298 consensus_12570#1 CTGTACATATTAAGCCCTTGGTGCTGGAAAATTCTGATGTTCAAGTTACAAAGGTTAATT 597 ************************************************************ consensus_12570#0 GGTGTAATACTAATATCTTCGCTGTCCAGAAG-----------AAAAGAAAAAAAA---- 3343 consensus_12570#1 GGTGTAATACTAATATCTTCGNTGTCCAGAAGTCGATTAGTTTGGAGGCAAAAAAAAAAA 657 ********************* ********** * * ******* consensus_12570#0 ------------- consensus_12570#1 AAAAAAAAAAAAA 670 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||