cluster # 12575

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Oryza sativa
cluster # 12575 cluster # 12575 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12575#0 length = 1698 sequences # 7

consensus_12575#1 length = 790 sequences # 3
consensus_12575#2 length = 226 sequences # 1

consensusID : consensus_12575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1698
fasta sequence

                              [CCCTCGAAAAACTTTTAATTCCACTCCACCTAATCCTGAATCCTCCTACCTATCGCCTCCCCCTCCTCCGAGACCGAGATCTCGCGCTCCGGCGAGGAGGCGAAGCTTCCAGAAGCTTCCGGAGGAGGAGGAGGGGCGCGCCACCTCGATGCTCTTCCCGAAGCGGATCAACTACATGGCCCCGATGCTGGCCTCCGCCGTCATCCTCCTCCTCCTCGTCTCCGGCTACTTCGAGCTCCCGTCCATCTCCTCCTACTCCGCCGCGCCGGCGCCGCCGCTCTTCGCCACGGCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTACGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCGGCGGCGGCGGCGGGAGGTGCGAGGGCGTGAGGACGCGCTCGACGGGGTGTACACGTGCCGGTGCGGGGTGAGCTGCGTGTGGAGCAAGTCCGCCGCCGCCGTCGACCGGCCCGACGCGCTGCTCTTCGAGGGCGCCACGCCGCCGCCGCAGAGAATGAAAGGCCTGCCTCTTCGTGTATATCTGGATCTGGAGGCTGCTAGGAAACCAACTGGTTTCGAGGACATTTTTATAGGTTACCATGCTAAAGATGATGTGCAAGTAACATATGCTGGAAAATCATTCCACACTAGCCGAAGTTACCATGTATCAACTGAAAAGAGAAATGATGCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGGTTGCAAAAGATTTCCTGTCATTGGTTCCGCACCACTCTTTCGGGAAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTCTATGCCTTGGA-GGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTCTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCACATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATACTGATGTCTTGAAGAAATGTGATAATACAGAATCAGCATTAACTAGAAAATGTGTATGCTGCTTAATGCCTAAAA]

[+] EMBL AK067033             [CCCTCGAAAAACTTTTAATTCCACTCCACCTAATCCTGAATCCTCCTACCTATCGCCTCCCCCTCCTCCGAGACCGAGATCTCGCGCTCCGGCGAGGAGGCGAAGCTTCCAGAAGCTTCCGGAGGAGGAGGAGGGGCGCGCCACCTCGATGCTCTTCCCGAAGCGGATCAACTACATGGCCCCGATGCTGGCCTCCGCCGTCATCCTCCTCCTCCTCGTCTCCGGCTACTTCGAGCTCCCGTCCATCTCCTCCTACTCCGCCGCGCCGGCGCCGCCGCTCTTCGCCACGGCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTACGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCGGCGGCGGCGGCGGGAGGTGCGAGGGCGTGAGGACGCGCTCGACGGGGTGTACACGTGCCGGTGCGGGGTGAGCTGCGTGTGGAGCAAGTCCGCCGCCGCCGTCGACCGGCCCGACGCGCTGCTCTTCGAGGGCGCCACGCCGCCGCCGCAGAGAATGAAAGGCCTGCCTCTTCGTGTATATCTGGATCTGGAGGCTGCTAGGAAACCAACTGGTTTCGAGGACATTTTTATAGGTTACCATGCTAAAGATGATGTGCAAGTAACATATGCTGGAAAATCATTCCACACTAGCCGAAGTTACCATGTATCAACTGAAAAGAGAAATGATGCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGGTTGCAAAAGATTTCCTGTCATTGGTTCCGCACCACTCTTTCGGGAAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTCTATGCCTTGGA GGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTCTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCACATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATACTGATGTCTTGAAGAAATGTGATAATACAGAATCA                                        ]
[+] EMBL CB667799             [                 ATTCCACTCCACCTAATCCTGAATCCTCCTACCTATCGCCTCCCCCTCCTCCGAGACCGAGATCTCGCGCTCCGGCGAGGAGGCGAAGCTTCCAGAAGCTTCCGGAGGAGGAGGAGGGGCGCGCCACCTCGATGCTCTTCCCGAAGCGGATCAACTACATGGCCCCGATGCTGGCCTCCGCCGTCATCCTCCTCCTCCTCGTCTCCGGCTACTTCGAGCTCCCGTCCATCTCCTCCTACTCCGCCGCGCCGGCGCCGCCGCTCTTCGCCACGGCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTACGGCGCCAACTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB641770             [                                                               TCCTCCGAGACCGAGATCTCGCGCTCCGGCGAGGAGGCGAAGCTTCCAGAAGCTTCCGGAGGAGGAGGAGGGGCGCGCCACCTCGATGCTCTTCCCGAAGCGGATCAACTACATGGCCCCGATGCTGGCCTCCGCCGTCATCCTCCTCCTCCTCGTCTCCGGCTACTTCGAGCTCCCGTCCATCTCCTCCTACTCCGCCGCGCCGGCGCCGCCGCTCTTCGCCACGGCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTACGGCGCCAACTCGACCGCGGCGGTGGCCGCGGGGATCACCGGTGGTGCCGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF323543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGCAAGTCCGCCGCCGCCGTCGACCGGCCCGACGCGCTGCTCTTCGAGGGCGCCACGCCGCCGCCGCAGAGAATGAAAGGCCTGCCTCTTCGTGTATATCTGGATCTGGAGGCTGCTAGGAAACCAACTGGTTTCGAGGACATTTTTATAGGTTACCATGCTAAAGATGATGTGCAAGTAACATATGCTGGAAAATCATTCCACACTAGCCGAAGTTACCATGTATCAACTGAAAAGAGAAATGATGCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGGTTGCAAAAGATTTCCTGTCATTGGTTCCGCACCACTCTTTCGGGAAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF323780             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATCTGGAGGCTGCTAGGAAACCAACTGGTTTCGAGGACATTTTTATAGGTTACCATGCTAAAGATGATGTGCAAGTAACATATGCTGGAAAATCATTCCACACTAGCCGAAGTTACCATGTATCAACTGAAAAGAGAAATGATGCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGGTTGCAAAAGATTTCCTGTCATTGGTTCCGCACCACTCTTTCGGGAAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTCTATGCCTTGGAGGGCTGGGTCAGTGCCAATATACTTCGGNGCACCCAATGTCTGGGACTTCATTCCTCCCAATTCTATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB662677             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCACCACTCTTTCGGGAAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTCTATGCCTTGGA GGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTCTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCACATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATACTGATGTCTTGAAGAAATGTGATAATACAGAATCAGCATTAACTAGAAAATGTGTATGCTGC             ]
[-] EMBL CB662676             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCTGACATGGCATTATCCATGTATCCAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTCTATGCCTTGGA GGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTCTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCACATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATACTGATGTCTTGAAGAAATGTGATAATACAGAATCAGCAATGACTAGAAAATGTGTATGCTGCTTAATGCCTAAAA]




>consensus_12575#0
CCCTCGAAAAACTTTTAATTCCACTCCACCTAATCCTGAATCCTCCTACCTATCGCCTCC
CCCTCCTCCGAGACCGAGATCTCGCGCTCCGGCGAGGAGGCGAAGCTTCCAGAAGCTTCC
GGAGGAGGAGGAGGGGCGCGCCACCTCGATGCTCTTCCCGAAGCGGATCAACTACATGGC
CCCGATGCTGGCCTCCGCCGTCATCCTCCTCCTCCTCGTCTCCGGCTACTTCGAGCTCCC
GTCCATCTCCTCCTACTCCGCCGCGCCGGCGCCGCCGCTCTTCGCCACGGCGCTGGACGC
CGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGA
CGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTA
CGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCGG
CGGCGGCGGCGGGAGGTGCGAGGGCGTGAGGACGCGCTCGACGGGGTGTACACGTGCCGG
TGCGGGGTGAGCTGCGTGTGGAGCAAGTCCGCCGCCGCCGTCGACCGGCCCGACGCGCTG
CTCTTCGAGGGCGCCACGCCGCCGCCGCAGAGAATGAAAGGCCTGCCTCTTCGTGTATAT
CTGGATCTGGAGGCTGCTAGGAAACCAACTGGTTTCGAGGACATTTTTATAGGTTACCAT
GCTAAAGATGATGTGCAAGTAACATATGCTGGAAAATCATTCCACACTAGCCGAAGTTAC
CATGTATCAACTGAAAAGAGAAATGATGCACTTATTTACTGGTCATCTTCAAGGTGTCTT
CCTCATAGAGACAAGGTTGCAAAAGATTTCCTGTCATTGGTTCCGCACCACTCTTTCGGG
AAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCA
ACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTAC
AAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTC
TATGCCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTCTGGGACTTC
ATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCA
TATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGG
TGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGC
CGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTG
ATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAA
GAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTC
TTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAA
AAAAAAGGTATGAATGCACATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTC
ATACTGATGTCTTGAAGAAATGTGATAATACAGAATCAGCATTAACTAGAAAATGTGTAT
GCTGCTTAATGCCTAAAA

consensusID : consensus_12575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 790
fasta sequence

                              [GCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGCCCGAGAAATTGTTTTATGCCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTTTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTCCCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACCCTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCCCATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATACTGATGTCTTGAAGAAATGTGATAATCCAGAATCAGCATTTACTAAAAAAAAAAAATCAAAAAAAAAAAGG]

[-] EMBL CB667800             [GCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGTTTGTTCAACCAATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGACCGAGAAATTGTTCTATGCCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTTTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACCCTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAAGGCCCATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATACTGATGTCTTGAAGAAATTTAAAGAGACAGAATCAGCATTT                              ]
[-] EMBL CB641771             [                                                                                               CACTGCGCAATGTCACATTACAAGTTTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGCCCGAGAAATTGTTTTATGCCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTTTGGGACTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTCCCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTCCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCCCATTATATCGCTAATATTATTCGGTCTTTATGACCATCTGTCATATTGATGTCTTGAAGAAATGTGTTAATCCAGAATCAGCATTAACTAAAAAAAAAAAATCAAAAAAAAAAAGG]
[-] EMBL CB678729             [                                                                                                                                           ttCTAAGCCAGAAAGCTATGTGCCCGAGAAATTGTTTTATCCCTTGGAGGGTGGGTCAGTGCCAATATACTTCGGGGCCCCCAATGTTTGGGACTTCATTCCTCCCAATTTTATTATAGATGCCTCAAAATTCAGCTCACTCCGGGAGTTGGCATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATCCCATGCATGGAGGAGGTGTGGTCCCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAGACTGGACATGTCCCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATATTGTTGTCATAACCCCCTTTGTTTTTTTTGGGTTTTTTGAATTTTTTTTTGTCTCCAGAGTTGAGAGATGTATCCAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCCCATTATTTCGGTAATATTATCCGGTCTTTATGCCCATCTGTCATACTGATGTCTTGAAGAAATGTGATAATCCAGAATCA                                    ]




>consensus_12575#1
GCACTTATTTACTGGTCATCTTCAAGGTGTCTTCCTCATAGAGACAAGTTTGTTCAACCA
ATGATAATGGAAAACCACACTGGTGGGATCATCTTCACTGCGCAATGTCACATTACAAGT
TTGTTCTTGCAATTGAGAATACTAAGACAGAAAGCTATGTGCCCGAGAAATTGTTTTATG
CCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTTTGGGACTTCATTC
CTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATG
TGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTG
GTCCCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCCTTGCCGAC
TTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAATTGTGATAG
ACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAA
ATAGTTTGATATTGTTGTCATAACACCCTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTT
TGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGGAAAAAAAA
AAGGTATGAATGCCCATTATATCGCTAATATTATACGGTCTTTATGACCATCTGTCATAC
TGATGTCTTGAAGAAATGTGATAATCCAGAATCAGCATTTACTAAAAAAAAAAAATCAAA
AAAAAAAAGG

consensusID : consensus_12575#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [CACGCCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTACGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCGGCGGTGTGTTCTTACAACAATATCAAACTATT]

[+] EMBL CB678728             [CACGCCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTACGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCGGCGGTGTGTTCTTACAACAATATCAAACTATT]




>consensus_12575#2
CACGCCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGC
CTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGT
GGGGGCGCCCGGGTACGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGG
GGCCGGGTGGGGCGGCGGTGTGTTCTTACAACAATATCAAACTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12575#0      CCCTCGAAAAACTTTTAATTCCACTCCACCTAATCCTGAATCCTCCTACCTATCGCCTCC 60
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CCCTCCTCCGAGACCGAGATCTCGCGCTCCGGCGAGGAGGCGAAGCTTCCAGAAGCTTCC 120
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      GGAGGAGGAGGAGGGGCGCGCCACCTCGATGCTCTTCCCGAAGCGGATCAACTACATGGC 180
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CCCGATGCTGGCCTCCGCCGTCATCCTCCTCCTCCTCGTCTCCGGCTACTTCGAGCTCCC 240
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      GTCCATCTCCTCCTACTCCGCCGCGCCGGCGCCGCCGCTCTTCGCCACGGCGCTGGACGC 300
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CGTCGGCACCCGCGAGCGGTCGCCGTTCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGA 360
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CGCCGCCGTCGGGTGCCCGCGCATCCGCGCCAAGCTCGACGCCGTGGGGGCGCCCGGGTA 420
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CGGCGCCAACTCGACCGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCGG 480
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CGGCGGCGGCGGGAGGTGCGAGGGCGTGAGGACGCGCTCGACGGGGTGTACACGTGCCGG 540
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      TGCGGGGTGAGCTGCGTGTGGAGCAAGTCCGCCGCCGCCGTCGACCGGCCCGACGCGCTG 600
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CTCTTCGAGGGCGCCACGCCGCCGCCGCAGAGAATGAAAGGCCTGCCTCTTCGTGTATAT 660
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CTGGATCTGGAGGCTGCTAGGAAACCAACTGGTTTCGAGGACATTTTTATAGGTTACCAT 720
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      GCTAAAGATGATGTGCAAGTAACATATGCTGGAAAATCATTCCACACTAGCCGAAGTTAC 780
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CATGTATCAACTGAAAAGAGAAATGATGCACTTATTTACTGGTCATCTTCAAGGTGTCTT 840
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      CCTCATAGAGACAAGGTTGCAAAAGATTTCCTGTCATTGGTTCCGCACCACTCTTTCGGG 900
consensus_12575#1      ------------------------------------------------------------
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      AAATGCTTGAATAATGTTGATGGTCCTGACATGGCATTATCCATGTATCCAGTTTGTTCA 960
consensus_12575#1      --GCACTTATTTACTGGTCAT--CTTCAAGGTGTCTTCCTCATAGAGACAAGTTTGTTCA 56
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      ACCAATGATAATGGAAAACCACACTGGTGGG-ATCATCTTCACT-GCGCAATGTCACATT 1018
consensus_12575#1      ACCAATGATAATGGAAAACCACACTGGTGGG-ATCATCTTCACT-GCGCAATGTCACATT 114
consensus_12575#2      -------------------CACGCCGCTGGACGCCGTCGGCACCCGCGAGCGGTCGCCGT 41
                                          *** * * ***    * **  ***  ***    *** *  *

consensus_12575#0      ACAAGTTTGTTCTTGCAAT-TGAGAATACTAAGACAGAAA-GCTATGTGACCGAGAAATT 1076
consensus_12575#1      ACAAGTTTGTTCTTGCAAT-TGAGAATACTAAGACAGAAA-GCTATGTGCCCGAGAAATT 172
consensus_12575#2      TCACGTCGCTTCTCTCGGCCTTCGCCGACTGGGACGCCGCCGTCGGGTGCCCGCGCATCC 101
                        ** **   ****  *    *  *   ***  ***      *    *** *** * *   

consensus_12575#0      GTTCTATGCCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTCTGGGA 1136
consensus_12575#1      GTTTTATGCCTTGGAGGCTGGGTCAGTGCCAATATACTTCGGGGCACCCAATGTTTGGGA 232
consensus_12575#2      GCGCCAAGCTC--GACGCCGTGGGGGCGCCCGGGTAC-----GGCGCCAA----CTCGAC 150
                       *    * **    ** ** * *   * ***    ***     *** ** *     * *  

consensus_12575#0      CTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGC 1196
consensus_12575#1      CTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGC 292
consensus_12575#2      CGCGGCGGCGGCCGCGTCGATCACCGGCGGGGCCGGGTGGGGCG-GCGGTGTGTTCTTAC 209
                       *       *  **   ** ** *  *  *   *    *   **   *   ***   *  *

consensus_12575#0      ATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAG 1256
consensus_12575#1      ATCATATGTGAAAGCTGTTGCAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAG 352
consensus_12575#2      AACA-ATATCAAA-CTATT----------------------------------------- 226
                       * ** ** * *** ** **                                         

consensus_12575#0      GAGGTGTGGTACCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCC 1316
consensus_12575#1      GAGGTGTGGTCCCCTGGGTAACTTTGGAAGGTCGCGTGAAATGAGCCTTGACACACTGCC 412
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      TTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAAT 1376
consensus_12575#1      TTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAAT 472
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      TGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATC 1436
consensus_12575#1      TGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATC 532
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      AGAAGAAAATAGTTTGATATTGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAA 1496
consensus_12575#1      AGAAGAAAATAGTTTGATATTGTTGTCATAACACCCTTTGTTTCTTTTGCGTTTTTTGAA 592
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      TTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGG 1556
consensus_12575#1      TTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGTTAGGGATTCATGTTTGTAGG 652
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      AAAAAAAAAAGGTATGAATGCACATTATATCGCTAATATTATACGGTCTTTATGACCATC 1616
consensus_12575#1      AAAAAAAAAAGGTATGAATGCCCATTATATCGCTAATATTATACGGTCTTTATGACCATC 712
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      TGTCATACTGATGTCTTGAAGAAATGTGATAATACAGAATCAGCATTAACTAGAAAATGT 1676
consensus_12575#1      TGTCATACTGATGTCTTGAAGAAATGTGATAATCCAGAATCAGCATTTACTAAAAAAAAA 772
consensus_12575#2      ------------------------------------------------------------
                                                                                   

consensus_12575#0      GTATGCTGCTTAATGCCTAAAA 1698
consensus_12575#1      AAAT----CAAAAAAAAAAAGG 790
consensus_12575#2      ----------------------