These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 988 fasta sequence [CTTTGCCCCTGGAAATTGGAATTCAACTGGCCACATAACTCATTCCATTTCCACGCACAAACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG-TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG-TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT-AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGAAATTTGCTTGTGCTAAGCCTTCAAAAA] [+] EMBL AK061573 [CTTTGCCCCTGGAAATTGGAATTCAACTGGCCACATAACTCATTCCATTTCCACGCACAAACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGTAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGAAATTTGCTTGTG ] [+] EMBL CF291147 [ TCCACGCACAAACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTG ] [+] EMBL AK099156 [ ACAAACGCCAAAAATCGCCGAGAAGAATCCGGAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGA ] [+] EMBL CF292742 [ CCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTG ] [+] EMBL AU057509 [ GAAGAAAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGACGGCTACTACACCGAGACG TTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCA CTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTTCATCGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATAC ] [+] EMBL CB683783 [ GAGAACCTCACGGCGGCGGCGGCGACCGGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAAATCTATGCGAGGGAGGGAGCGATGGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCCGGAGGGCGGCTACTACACCGAGACGATTCCGCGACGGGTCCGTCTCCGTCACCACCGCGCAGCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCACCACTGCTATCTACTTCCTGCTTCCATCGGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCGCGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTG TCTTCGGTCCACACCTGGAGGCTGGACAGCGTCCCCACTATACCGGGCCACCAAATGTGTGGATCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCACCGTTCTTGTCGAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTACTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCT AAAGCAGAACCGTTCCTCAAGTACCTTATT ] [-] EMBL CF291148 [ GATGTGAAATCCATTGCTCCT AAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAACCATGTTTTGAGCTCAACATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATGAAATTTGCTTGTGCTAAGCCTTCAAAAA] consensusID : consensus_12579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 660 fasta sequence [CAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCATCGGTCCACACCTGGAGG-CTGGCCAGCGTCCCCAGTATA-CCGT-GCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT-TTAGC-AGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCA-TTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA-CTCTCCTGTACGAAAA-CAGAATAAAACACT-GGCAATGTTGAGATGAAAAAAAAAAAAAGA] [-] EMBL CB683393 [CAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCCATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAAGGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCATCGGTCCACACCTGGAGG CTGGCCAGCGTCCCCAGTATA CCGT GCCACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT TTAGC AGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCA TTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA CTCTCCTGTACGAAAA CAGAATAAAACACT GGCAATGTTGAGATGAAAAAAAAAAAAAGA] [+] EMBL BM038958 [ CAC CCTGGAGGTCTGCCCAGCGTCCCCAGTATACCCGTGGCCNCCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCCATTTTGATGATGTGAAATCCCTTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATTCTTAGCNCGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCACTTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACANCTCTCCTGTACGAAAACCAGAATAAAACCCTCGGCCATGTTGAGATGAAAAAAAAAAA ] [-] EMBL CF292743 [ CACCAAATGTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAAGTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT TAAAC AGCCTGTCTGGCAAAAAAAAAT ACGGTATTGGACGCCA TTTTTAGTGTGATTGCTTCGGGTTTG GATCTT TCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA CTCTCCTGTACG ] [+] EMBL AU173960 [ GTGTGGTTCGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATNTGATGGCAGCGTTNTTGTCAAGTNTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGGCTTCCAGTATGAGGATTTNGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAAGGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAACATACTGTATT TTAGC AGCCTGTNTGGCAAGATTGCCTGACGGTATTGGACGCCA TTTTTAGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTGGTGATAGTTGTAACA CTNTCCTGTACGAAAA CAGAATAAAACACT GGCAATGTTGAGATGAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12579#0 CTTTGCCCCTGGAAATTGGAATTCAACTGGCCACATAACTCATTCCATTTCCACGCACAA 60 consensus_12579#1 ------------------------------------------------------------ consensus_12579#0 ACAAACGCCAAAAATCGCCGAGAAGAATCCGAAGAAAACCTCACGGCGGCGGCGGCGACC 120 consensus_12579#1 ------------------------------------------------------------ consensus_12579#0 GGCGACCAGAATCGGCGAACGGGCACGGGCCGAGCAGATCTAGGCGAGGGAGGGAGCGAT 180 consensus_12579#1 ------------------------------------------------------------ consensus_12579#0 GGGGTCGAGCGAGATGACGGCGACGGAGGTGGCGGCGCTGCTGGATCTGAAGCCGCACCC 240 consensus_12579#1 ------------------------------------------------------------ consensus_12579#0 GGAGGGCGGCTACTACACCGAGACGTTCCGCGACGGCTCCGTCTCCGTCACCACCGCGCA 300 consensus_12579#1 ------------------------------------------------------------ consensus_12579#0 GCTCCCGCCGCAGTACAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCC 360 consensus_12579#1 ---------------CAAGGTCGACCGTGCTATCAGCACTGCTATCTACTTCCTGCTTCC 45 ********************************************* consensus_12579#0 ATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAA 420 consensus_12579#1 ATCAGGGAGTGTTTCTCACCTCCATCGCATTCCCTGTGCTGAAACATGGCACTTCTACAA 105 ************************************************************ consensus_12579#0 GGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCAT 480 consensus_12579#1 GGGAGAGCCTCTCACGGTCTTTGAGCTACACGATGATGGACACATTGACCTCACTGTCAT 165 ************************************************************ consensus_12579#0 CGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTT 540 consensus_12579#1 CGGTCCACACCTGGAGGCTGGCCAGCGTCCCCAGTATACCGTGCCACCAAATGTGTGGTT 225 ************************************************************ consensus_12579#0 CGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAA 600 consensus_12579#1 CGGTTCTTTCCCTACCCTGGATGTTGAATCATTCGCATCTGATGGCAGCGTTCTTGTCAA 285 ************************************************************ consensus_12579#0 GTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGG 660 consensus_12579#1 GTCTCGAAAGAGGGATCCTGAGCTTCATTACTCCCTAGTTGGCTGCACTTGTGCCCCTGG 345 ************************************************************ consensus_12579#0 CTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAA 720 consensus_12579#1 CTTCCAGTATGAGGATTTCGAAATGGCCAATTTTGATGATGTGAAATCCATTGCTCCTAA 405 ************************************************************ consensus_12579#0 GGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAA 780 consensus_12579#1 GGCAGAACCGTTCCTCAAGTACCTTATTCCTTCCACCAAGTAATCATGTTTTGAGCTCAA 465 ************************************************************ consensus_12579#0 CATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTT 840 consensus_12579#1 CATACTGTATTTTAGCAGCCTGTCTGGCAAGATTGCCTGACGGTATTGGACGCCATTTTT 525 ************************************************************ consensus_12579#0 AGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTG 900 consensus_12579#1 AGTGTGATTGCTTCGGGTTTGTGTTCTTGTCTTGTACACTTAAGAACACGCATGTCCTTG 585 ************************************************************ consensus_12579#0 GTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATG 960 consensus_12579#1 GTGATAGTTGTAACACTCTCCTGTACGAAAACAGAATAAAACACTGGCAATGTTGAGATG 645 ************************************************************ consensus_12579#0 AAATTTGCTTGTGCTAAGCCTTCAAAAA 988 consensus_12579#1 AAAAAAAAAAAAAGA------------- 660 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||