|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[GCGGTAGCCAAACACCTGTAAACTTGTTTTTGTACAAATCACCCCCAGTTTGTCTTTCTGAAGAAGCGTTAATTTTGAGGCCATCGAGTTAATTATTGTGAGCCACCATGGGAGCTGCTCGGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGATGTCCCTCTTGCTGCCGCCGCCGTTTCTGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGCATCAAGGCCGTGTATTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAAATCCAGGTCCCGGCGGTGAACACCATCCTCCTATCTCTTCCGGACGCGGCAACAATGGATAAAGGCTAGACAATGGATCTATGAGAGTACCCAAGAACCGATTAGAACTAAGCAGGCCGATCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAATAAAGCTCTCCAGATATAATTCTGGAGGTTAGGTTTACTAACTTGTAATACAAGTTTCCATACTCTATTGGCGTGTTCGGCTGTCTTTATTTGCACCGTGCCACCGTGTTGCAGTACAGTACTTTTATGTGTGCAAAGCACAACCGAACATGTCCTATATATATATTTAGAAATGGATGGGGTATATCCTA]
[+] EMBL AK066275 [GCGGTAGCCAAACACCTGTAAACTTGTTTTTGTACAAATCACCCCCAGTTTGTCTTTCTGAAGAAGCGTTAATTTTGAGGCCATCGAGTTAATTATTGTGAGCCACCATGGGAGCTGCTCGGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGATGTCCCTCTTGCTGCCGCCGCCGTTTCTGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGCATCAAGGCCGTGTATTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAAATCCAGGTCCCGGCGGTGAACACCATCCTCCTATCTCTTCCGGACGCGGCAACAATGGATAAAGGCTAGACAATGGATCTATGAGAGTACCCAAGAACCGATTAGAACTAAGCAGGCCGATCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAATAAAGCTCTCCAGATATAATTCTGGAGGTTAGGTTTACTAACTTGTAATACAAGTTTCCATACTCTATTGGCGTGTTCGGCTGTCTTTATTTGCACCGTGCCACCGTGTTGCAGTACAGTACTTTTATGTGTGCAAAGCACAACCGAACATGTCCTATATATATATTTAGAAATGGATGGGGTATATCCTA]
consensusID : consensus_1258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[GAGCCACCATGGGAGCTGCTCGGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGATGTCCCTCTTGCTGCCGCCGCCGTTTCTGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGCATCAAGGCCGTGTATTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAAATCCAGGTCCCGGCGGTGAACACCATCCTCCTATCTCTTCCGGACGCGGCAACAATGGATAAAGGCTAGACNATGGATCTATGAGAGTACCCAAGAACCGATTAGAACTAAGCAGGCCGATCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAATAAAGCTCTCCAGAATATAATTCTGGAGGTTAGGTTTACTAACTTGTAATACAAGTTTCCATACTCTATTGGCGTGTTCGGCTGTCANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA754209 [GAGCCACCATGGGAGCTGCTCGGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGATGTCCCTCTTGCTGCCGCCGCCGTTTCTGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGCATCAAGGCCGTGTATTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAAATCCAGGTCCCGGCGGTGAACACCATCCTCCTATCTCTTCCGGACGCGGCAACAATGGATAAAGGCTAGACNATGGATCTATGAGAGTACCCAAGAACCGATTAGAACTAAGCAGGCCGATCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAATAAAGCTCTCCAGAATATAATTCTGGAGGTTAGGTTTACTAACTTGTAATACAAGTTTCCATACTCTATTGGCGTGTTCGGCTGTCANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1258#0 GCGGTAGCCAAACACCTGTAAACTTGTTTTTGTACAAATCACCCCCAGTTTGTCTTTCTG 60
consensus_1258#1 ------------------------------------------------------------
consensus_1258#0 AAGAAGCGTTAATTTTGAGGCCATCGAGTTAATTATTGTGAGCCACCATGGGAGCTGCTC 120
consensus_1258#1 ---------------------------------------GAGCCACCATGGGAGCTGCTC 21
*********************
consensus_1258#0 GGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGATGTCCCTCTTGCTGCCGCCGCCGTTTC 180
consensus_1258#1 GGCTTTGCGTTGGGTTGCAGGCAATCCTAGTGATGTCCCTCTTGCTGCCGCCGCCGTTTC 81
************************************************************
consensus_1258#0 TGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGC 240
consensus_1258#1 TGCCATGCGTGCTCGCCGGCGCTGGCCCTGGAGGCGAGCTCGTCGCCGGCGAGGAGAAGC 141
************************************************************
consensus_1258#0 ATCAAGGCCGTGTATTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAA 300
consensus_1258#1 ATCAAGGCCGTGTATTTGCTTCAGGCATATCAACACGGTCTCTTCGAATTCTATCTCAAA 201
************************************************************
consensus_1258#0 ATCCAGGTCCCGGCGGTGAACACCATCCTCCTATCTCTTCCGGACGCGGCAACAATGGAT 360
consensus_1258#1 ATCCAGGTCCCGGCGGTGAACACCATCCTCCTATCTCTTCCGGACGCGGCAACAATGGAT 261
************************************************************
consensus_1258#0 AAAGGCTAGACAATGGATCTATGAGAGTACCCAAGAACCGATTAGAACTAAGCAGGCCGA 420
consensus_1258#1 AAAGGCTAGACNATGGATCTATGAGAGTACCCAAGAACCGATTAGAACTAAGCAGGCCGA 321
*********** ************************************************
consensus_1258#0 TCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAAT 480
consensus_1258#1 TCCAGGTGTTAGAACTACGTTTAGGAATAAGAGTAAAAATACGAATTATCAAGATAAAAT 381
************************************************************
consensus_1258#0 AAAGCTCTCCAGA-TATAATTCTGGAGGTTAGGTTTACTAACTTGTAATACAAGTTTCCA 539
consensus_1258#1 AAAGCTCTCCAGAATATAATTCTGGAGGTTAGGTTTACTAACTTGTAATACAAGTTTCCA 441
************* **********************************************
consensus_1258#0 TACTCTATTGGCGTGTTCGGCTGTCTTTATTTGCACCGTGCCACCGTGTTGCAGTACAGT 599
consensus_1258#1 TACTCTATTGGCGTGTTCGGCTGTCANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 501
*************************
consensus_1258#0 ACTTTTATGTGTGCAAAGCACAACCGAACATGTCCTATATATATATTTAGAAATGGATGG 659
consensus_1258#1 NNNNNNNNNNNNNNNNNN------------------------------------------ 519
consensus_1258#0 GGTATATCCTA 670
consensus_1258#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||