cluster # 12605

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Oryza sativa
cluster # 12605 cluster # 12605 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12605#0 length = 1093 sequences # 5
consensus_12605#1 length = 1080 sequences # 3

consensus_12605#2 length = 814 sequences # 2
consensus_12605#3 length = 561 sequences # 1

consensusID : consensus_12605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1093
fasta sequence

                              [CTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCGACTTCTCAGGAGGATCCCGCTGCTCTTGTGTTTTATTGTAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGA-TCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTC-AACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATCTCATGGATGATGATGAAGGAGAACCGATGAAAAAAAAAAAACCAAAAAAA]

[+] EMBL AK102316             [CTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCGACTTCTCAGGAGGATCCCGCTGCTCTTGTGTTTTATTGTAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGA TCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTC AACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATCTCATGGATG                                         ]
[+] EMBL BI118618             [                                                                                                                                                                                 TTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGACGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR15701B            [                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGGNAGGTCCTACGAGCACTCGGAGGCCGGGAC GCGANTCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGNCTACGGGGGCTCCGTCGGCTGGAACGTCCTCAAACCTGGCCGNCCTCGTGTGGCTGCGCGGCCGNTGGCTGGGCAAGATGGCCGT                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR15642A            [                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTNTGCGCGAGGTCCTACGAGCACTCGGAGGNCGNGACGGCGA TCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTNCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTC AACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGA                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU197608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCTGNGTCGGCGTCCTCATGGCCGGNTGGTCCTTCCTCATCAGCATGGCGGCATTNTCCTCCCTCCTCCTCGGNTGGTT GTCCTCGGCGTNTACTGCTTCAAGGGCTTGGTNTGCTGATCGATNTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATNTCATGGATGATGATGAAGGAGAACCGATGAAAAAAAAAAAACCAAAAAAA]




>consensus_12605#0
CTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCGACTT
CTCAGGAGGATCCCGCTGCTCTTGTGTTTTATTGTAGGTTGACAGGATCATGACATGCAA
CTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTG
CCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATG
CAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATT
GTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATT
GCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGAC
CTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCT
GCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCG
ATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAAC
CTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGC
GGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGG
CTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGC
GTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTC
GGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGG
CCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTT
CAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTT
TGAAGTTTCATGGAACTATAATCTCATGGATGATGATGAAGGAGAACCGATGAAAAAAAA
AAAACCAAAAAAA

consensusID : consensus_12605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1080
fasta sequence

                              [AACACTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCGACTTCTCAGGAGGATCCCGCTGCTCTTGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATCTCATGGATGATGATGAAGGAGAACCGATGAAAAGACCATTTCTACT]

[+] EMBL AK061570             [AACACTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCGACTTCTCAGGAGGATCCCGCTGCTCTTGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATCTCATGGATGATGATGAAGGAGAACCGATGAAAAGACCA        ]
[-] EMBL CB651505             [                                                                                                                                                                                                                                                                         AGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATCTCATGGATGATGATGAAGGAGAACCGATGAAAAGACCATTTCTACT]
[-] EMBL CB655400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGAAAGTGTTGTTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGTTACAACCTTTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTAGGGGTCCTCATGGCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTTTCCTCCCTCCTCCTCGGCTGGTTCGTCCTCGGCGTTTACTGCTTCAAGGGCTTGGTTTGCTGATCGATCTGAAGGCCATTTTGTTGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATTATAGACAGTTTTTCCAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTCATGGAACTATAATCTCATGGATGATGATGAAGGAGAAAGGATGAAAAG            ]




>consensus_12605#1
AACACTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCG
ACTTCTCAGGAGGATCCCGCTGCTCTTGGTTGACAGGATCATGACATGCAACTGGAAAAT
GCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATG
GAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTG
TGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACA
CCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAG
GATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATAT
GGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTC
GCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGG
GACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACC
TGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTC
GGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAG
ATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGCCTGCGTCGGCGTCCTCATG
GCCGGCTGGTCCTTCCTCATCAGCATGGCGGCATTCTCCTCCCTCCTCCTCGGCTGGTTC
GTCCTCGGCGTCTACTGCTTCAAGGGCTTGGTCTGCTGATCGATCTGAAGGCCATTTTGT
TGAAATTCGACCAGAATATGCATCTTTTTTCAGTTACGCAACGCGCACTTTCAGTAAATT
ATAGACAGTTTTTACAGTGAAATCAGAGAGTTGTACACTTGTAGTCATCTTTGAAGTTTC
ATGGAACTATAATCTCATGGATGATGATGAAGGAGAACCGATGAAAAGACCATTTCTACT

consensusID : consensus_12605#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 814
fasta sequence

                              [CTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATTCGACTTCTCAGGAGGATCCCGCTGCTCTTGGACGAGTCCGAATGGGATTAAGGCCATCGGGGTGTTTCGTCTAGTGCATTGGTGGCTGGATGTTTTGCTTGCTGAGGAAGCGAGGTTGAGCTGGGAGGGAGGGCTCTGGTGTGGTGTTGACGAAGAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTNCACCTGGCCGCCCTCGTGTGGCTGCGCGGCC]

[+] EMBL CB651504             [CTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATTCGACTTCTCAGGAGGATCCCGCTGCTCTTGGACGAGTCCGAATGGGATTAAGGCCATCGGGGTGTTTCGTCTAGTGCATTGGTGGCTGGATGTTTTGCTTGCTGAGGAAGCGAGGTTGAGCTGGGAGGGAGGGCTCTGGTGTGGTGTTGACGAAGAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTNCACCTGGCCGCCCTCGTGTGGCTGCGCGGCC]
[+] EMBL CB648095             [CTCGGACCGGTGGCGTCCCAATCCAATCCATTCCCAATTCGACTTCTCAGGAGGATCCCGCTGCTCTTGGACGAGTCCGAATGGGATTAAGGCCATCGGGGTGTTTCGTCTAGTGCATTGGTGGCTGGATGTTTTGCTTGCTGAGGAAGCGAGGTTGAGCTGGGAGGGAGGGCTCTGGTGTGGTGTTGACGAAGAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTG           ]




>consensus_12605#2
CTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATTCGACTTCTCAGGAGGATCCCG
CTGCTCTTGGACGAGTCCGAATGGGATTAAGGCCATCGGGGTGTTTCGTCTAGTGCATTG
GTGGCTGGATGTTTTGCTTGCTGAGGAAGCGAGGTTGAGCTGGGAGGGAGGGCTCTGGTG
TGGTGTTGACGAAGAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGT
TTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCT
GCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATGCAGGAATTGTGGCCACTAGGT
GAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTG
GTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATTGCCCGGGAGGATGGAACTGTC
ATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCG
AGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTG
TGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTG
CAGTCCGGCGCGAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCAC
TCCTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTC
CTNCACCTGGCCGCCCTCGTGTGGCTGCGCGGCC

consensusID : consensus_12605#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [NAANAAGGCCCCCGGGGGAGACGGCTGGGNCGACCGCTGCAATCCGGCGCGAAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAAGCTGCCTGAACGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGNCTGCGTCGGCGTCCTCATGGGCGGNTGGTNCTTCCTCATCAACATGGCGGNATTCTCCTCCCTCCTCCTCGGNTGGTTCGTCCTCNGGCGTCTACTGCTTCAANGGCTTGGTCTGCTGATCGAATCTGAAAGGGCATTTTGTTGNAAATTCCAACCANAATATGCATCTTTTTTTCAGTTACNCAACGCCGCACTTTCCNGTAAATTATAGAACNGTTTTTAACCGTGAAATCANAAAAATTGTTACNCTTGGTAGTCATCTTTGAAATTTCATGGGAACTATANTCTTCCTGGATGNATGATNAAAGGAAC]

[+] EMBL BE228424             [NAANAAGGCCCCCGGGGGAGACGGCTGGGNCGACCGCTGCAATCCGGCGCGAAGGCGGTTCGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAAGCTGCCTGAACGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGCCGCCGTGGNCTGCGTCGGCGTCCTCATGGGCGGNTGGTNCTTCCTCATCAACATGGCGGNATTCTCCTCCCTCCTCCTCGGNTGGTTCGTCCTCNGGCGTCTACTGCTTCAANGGCTTGGTCTGCTGATCGAATCTGAAAGGGCATTTTGTTGNAAATTCCAACCANAATATGCATCTTTTTTTCAGTTACNCAACGCCGCACTTTCCNGTAAATTATAGAACNGTTTTTAACCGTGAAATCANAAAAATTGTTACNCTTGGTAGTCATCTTTGAAATTTCATGGGAACTATANTCTTCCTGGATGNATGATNAAAGGAAC]




>consensus_12605#3
NAANAAGGCCCCCGGGGGAGACGGCTGGGNCGACCGCTGCAATCCGGCGCGAAGGCGGTT
CGAGCACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAAGCTGCC
TGAACGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGT
GTGGCTGCGCGGCCGGTGGCTGGGCAAGATGGCCGTCGTCCGGTCGCTCCTCCCCTTCGC
CGCCGTGGNCTGCGTCGGCGTCCTCATGGGCGGNTGGTNCTTCCTCATCAACATGGCGGN
ATTCTCCTCCCTCCTCCTCGGNTGGTTCGTCCTCNGGCGTCTACTGCTTCAANGGCTTGG
TCTGCTGATCGAATCTGAAAGGGCATTTTGTTGNAAATTCCAACCANAATATGCATCTTT
TTTTCAGTTACNCAACGCCGCACTTTCCNGTAAATTATAGAACNGTTTTTAACCGTGAAA
TCANAAAAATTGTTACNCTTGGTAGTCATCTTTGAAATTTCATGGGAACTATANTCTTCC
TGGATGNATGATNAAAGGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12605#1      ---------AACACTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATT 51
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      CTTGACCTGCACTTGCTCGGAGCGGTGGCGTCCCAATCCAATCCATTCCCAATGCGACTT 60
consensus_12605#2      ------------------------------------------------------------
                                                                                   

consensus_12605#1      CCCAATGCGACTTCTCAGGAGGATCCCGCTGCTCTTGGTTGACAGGATCATGACATGCAA 111
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      CTCAGGAGGATCCCGCTGCTCTTGTGTTTTATTGTAGGTTGACAGGATCATGACATGCAA 120
consensus_12605#2      ------------------------------------------------------------
                                                                                   

consensus_12605#1      CTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTG 171
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      CTGGAAAATGCTTGATTATGTTTGATAGTACGAGGATTGTCCGAGTTTCTGAGATTATTG 180
consensus_12605#2      ------------------------------------------------------------
                                                                                   

consensus_12605#1      CCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATG 231
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      CCTTCAATGGAGGTTGAAGCTGCTTGTGGTGATGGAGTAGTCAGTTCAAGCAATGAGATG 240
consensus_12605#2      ------------------------------------------------------------
                                                                                   

consensus_12605#1      CAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATT 291
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      CAGGAATTGTGGCCACTAGGTGAAGTAGACCAAAAGGGAACCAGGTTCCCTTGTTGCATT 300
consensus_12605#2      ------------------------------------------------------------
                                                                                   

consensus_12605#1      GTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATT 351
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      GTTTGGACACCTCTGCCAGTGGTTTCTTGGCTGGCTCCCTACATAGGTCATGTCGGGATT 360
consensus_12605#2      -------------------------------------------------CTCGGAGCGGT 11
                                                                                   

consensus_12605#1      GCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGAC 411
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      GCCCGGGAGGATGGAACTGTCATGGACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGAC 420
consensus_12605#2      GGCGTCCCAATCCAATCCATTCCCAATTCGACTTCTCAGGAGGATCCCGCTGCTCTTGGA 71
                                                                                   

consensus_12605#1      CTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCT 471
consensus_12605#3      ------------------------------------------------------------
consensus_12605#0      CTTGCATATGGTTCTGCTGCGAGGTACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCT 480
consensus_12605#2      CGAGTCCGAATGGGATTAAGGCCATCGGGGTGTTTCGTCTAGTGCATTGGTGGCTGGATG 131
                                                                                   

consensus_12605#1      GCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCG 531
consensus_12605#3      --------------------------------NAANAAGGCCCCCGGGG--GAGACGGC- 25
consensus_12605#0      GCCAACCTCGCGGCGCATGTGTGCGCGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCG 540
consensus_12605#2      TTTTGCTTGCTGAGGAAGCGAGGTTGAGCTGGGAGGGAGGGCTCTGGTGTGGTGTTGACG 191
                                                            **  * * *  *  * *  * * 

consensus_12605#1      ATCTCGTGGGACGACGCGC----TGCAGTCCG-----GCGCGA-GGCGGTTCG-AGCACA 580
consensus_12605#3      ------TGGGNCGAC-CGC----TGCAATCCG-----GCGCGAAGGCGGTTCG-AGCACA 68
consensus_12605#0      ATCTCGTGGGACGACGCGC----TGCAGTCCG-----GCGCGA-GGCGGTTCG-AGCACA 589
consensus_12605#2      AAGAGGTTGACAGGATCATGACATGCAACTGGAAAATGCTTGATTATGTTTGATAGTACG 251
                             * *   *   *      ****    *     **  **    * **   ** ** 

consensus_12605#1      AGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGA-GCTGCCTGAACCGC 639
consensus_12605#3      AGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGAAGCTGCCTGAAC-GC 127
consensus_12605#0      AGTGCTACAACCTCTTCACCTGCAACAGCCACTCCTTCGTGGCGA-GCTGCCTGAACCGC 648
consensus_12605#2      AGGATTGTCCGAGTTTCTGAGATTATTGCCTTCAATGGAGGTTGAAGCTGCTTGTGGTGA 311
                       **   *        ***       *  ***     *    *  ** ***** **    * 

consensus_12605#1      CTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTG 699
consensus_12605#3      CTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTG 187
consensus_12605#0      CTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCTCAACCTGGCCGCCCTCGTGTGGCTG 708
consensus_12605#2      -TGGAGTA-GTCAGTTCAAGCAA-TGAGATGCAGGAATTGTGGCCACTAG-GTGAAGTAG 367
                        * *  ** * * * **   *   **  * *     *   ***** *    ***  *  *

consensus_12605#1      CGCGGCCGGTGGCTGGGCAAGATGGCCG--TCGTCCGGTCGCTCCTCCC--------CTT 749
consensus_12605#3      CGCGGCCGGTGGCTGGGCAAGATGGCCG--TCGTCCGGTCGCTCCTCCC--------CTT 237
consensus_12605#0      CGCGGCCGGTGGCTGGGCAAGATGGCCG--TCGTCCGGTCGCTCCTCCC--------CTT 758
consensus_12605#2      ACCAAAAGGGAACCAGGTTCCCTTGTTGCATTGTTTGGACACCTCTGCCAGTGGTTTCTT 427
                         *    **   *  **     * *  *  * **  ** * *  ** **        ***

consensus_12605#1      CGCCGCC-------GTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCA 802
consensus_12605#3      CGCCGCC-------GTGGNCTGCGTCGGCGTCCTCATGGGCGGNTGGTNCTTCCTCATCA 290
consensus_12605#0      CGCCGCC-------GTGGCCTGCGTCGGCGTCCTCATGGCCGGCTGGTCCTTCCTCATCA 811
consensus_12605#2      GGCTGGCTCCCTACATAGGTCATGTCGGGATTGCC-CGGGAGGATGGAACT--GTCATGG 484
                        ** * *        * *     *****  *   *  **  ** ***  **   ****  

consensus_12605#1      GCATGGCGGCATTCTCCTCCCTC-----------CTCCTCGGCTGGTTCGTCCTCGG-CG 850
consensus_12605#3      ACATGGCGGNATTCTCCTCCCTC-----------CTCCTCGGNTGGTTCGTCCTCNGGCG 339
consensus_12605#0      GCATGGCGGCATTCTCCTCCCTC-----------CTCCTCGGCTGGTTCGTCCTCGG-CG 859
consensus_12605#2      ACTTTGCAGGTTCAAATTTTGTGAGTGTAGATGACCTTGCATATGGTTCTGCTGCGAGGT 544
                        * * ** *  *     *   *            *    *   ******  *  *     

consensus_12605#1      TCTACTGCTTCAAGGGCTTGGTCTGCTGAT------CGA-TCTGAA-GGCCATTTTGTTG 902
consensus_12605#3      TCTACTGCTTCAANGGCTTGGTCTGCTGAT------CGAATCTGAAAGGGCATTTTGTTG 393
consensus_12605#0      TCTACTGCTTCAAGGGCTTGGTCTGCTGAT------CGA-TCTGAA-GGCCATTTTGTTG 911
consensus_12605#2      ACCTCCAGCTCGACAGGAGAAAGTGCTGCTTCCCTGCCAACCTCGCGGCGCATGTGTGCG 604
                        *  *    ** *  *       ***** *      * *  **    *  *** *    *

consensus_12605#1      AAA--TTCGACCAGAATATGCA--TCTTTTTT-CAGTTACGCAACGC-GCACTTTC-AGT 955
consensus_12605#3      NAAATTCCAACCANAATATGCA--TCTTTTTTTCAGTTACNCAACGCCGCACTTTCCNGT 451
consensus_12605#0      AAA--TTCGACCAGAATATGCA--TCTTTTTT-CAGTTACGCAACGC-GCACTTTC-AGT 964
consensus_12605#2      CGAGGTCCTACGAGCACTCGGAGGCCGGGACGGCGATCTCGTGGGACGACGCGCTGCAGT 664
                         *  * * ** *  *   * *   *       *  *  *      *  * *  *   **

consensus_12605#1      AAATTATAGA-CAGTTTTTA-CAGTGAAATCAGAGAG-TTGT-ACACTTG-TAGTCAT-- 1008
consensus_12605#3      AAATTATAGAACNGTTTTTAACCGTGAAATCANAAAAATTGTTACNCTTGGTAGTCAT-- 509
consensus_12605#0      AAATTATAGA-CAGTTTTTA-CAGTGAAATCAGAGAG-TTGT-ACACTTG-TAGTCAT-- 1017
consensus_12605#2      CCGGCGCGAGGCGGTTCGAG--CACAAGTGCTACAACCTCTTCACCTGCAACAGCCACTC 722
                                  * ***          *   *    *  *  * **       ** **   

consensus_12605#1      CTTTGAAGTTTCATGG---AACTATAATCT-CATGGATGA-TGATGAAGGAGAACCGATG 1063
consensus_12605#3      CTTTGAAATTTCATGGG--AACTATANTCTTCCTGGATGNATGATNAAAG-GAAC----- 561
consensus_12605#0      CTTTGAAGTTTCATGG---AACTATAATCT-CATGGATGA-TGATGAAGGAGAACCGATG 1072
consensus_12605#2      CTTCGTGGCGAGCTGCCTGAACCGCCTCGCCTACGGCGGCTCCGTCGGCTGGAACGTCCT 782
                       *** *        **    ***            **  *     *      ****     

consensus_12605#1      AAAAGACCATTTCTACT--------------- 1080
consensus_12605#3      --------------------------------
consensus_12605#0      AAAAAAAAAAAACCAAAAAAA----------- 1093
consensus_12605#2      NCACCTGGCCGCCCTCGTGTGGCTGCGCGGCC 814