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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1407 fasta sequence
[CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACTCACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGATCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTG-AGGTCAGGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCGCCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTCGCGCTCCTCGCCAAGGTCTCCATC-GCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCCTTGCCCGCTGCTCCTGCCGCCTCCTTGCCGGTGAGCGCAGGTGGATCCTCCGCTGCCACTGTAGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAACCTGCTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAGCGCGTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTCTGCGCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGTATCCACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTCGACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACG----GACTGATACCTAGGTATCAAGCTTGGTACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTACCATCCAGTATCCATGGGTACCATGTGCATGGTATTAGGTACCAGATACCTATAATTATCAGGTACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTC-ATCGGCTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCCAAAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCTGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCGCATCGCCACCCTTTTTACTTCTAAAAA]
[+] EMBL AK064111 [CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACTCACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGATCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTG AGGTCAGGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCGCCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTCGCGCTCCTCGCCAAGGTCTCCATC GCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCCTTGCCCGCTGCTCCTGCCGCCTCCTTGCCGGTGAGCGCAGGTGGATCCTCCGCTGCCACTGTAGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAACCTGCTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAGCGCGTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTCTGCGCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGTATCCACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTCGACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACG GACTGATACCTAGGTATCAAGCTTGGTACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTACCATCCAGTATCCATGGGTACCATGTGCATGGTATTAGGTACCAGATACCTATAATTATCAGGTACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTC ATCGGCTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCCAAAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCTGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCGCATCGC ]
[+] EMBL C26651 [ GCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGATCGTCGTCGTNGTCTTCGGCGGCCGAGGAGGACGACGACGNCACGGCGNGGTTGTAGGTCAGGGGGCGTCGGGGGTGATCTCGCCGNACTTCCTCGACGNCGTNCTCCGNNCGCTGCGGCGCCGCCTCCGCGCGCACGNTCCCCGTCACTGCCGGCGCCGGGGCTGCTTGCCTCCTCCCTCGCGCTCCTCGGCAAGGTCTCCATCNGCCTGNTTCTCATGAGCCACTTt ]
[-] EMBL CB965213 [ CCACCTTTAGCTTCTTCGCCACATCCTTCTCCATCAGGCATCAGTCGTCTTGATACCTCAGTATTAGGCCTGGTATCCACAAGTATCAGGCCTGGTACAAGATTACTCAGTGTCAAGCGCTCTTCGTCGATGTCGACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACGTTATGACTGATACCTAGGTATCAAGCTTGGTACCAAGTACTAGGGGTATGGTACCTCGAGGGTATCATGCCTGGTACCTAAGTA CCAGTATCCATGGGTACCATGTGCATGGTATCAGGTACCAGATACCTATAATTATCAAGTACCACATGGTACCTGATACCTATTATACCTGATACCTCGAGGGTATCATGCATGGTACCTAGGTACCATCCATGGGTATCTGTTAACAGTGAAATTTGGTAAGCCCAGAGTAGTC ATTGGCTTAGAGTCAGCATCGGCTTCAAAGTCCTGAGATTAGCCGATGAGAGTTGTCAAGTCATCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTATTAAAGGAAG ]
[+] EMBL BQ906916 [ CCCAGAGTAGTCTATCGGCTTAGAGTCAGCATCGGTTTCGAAGTCCTGAGATTAGCCGATGAAAGTTATCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTTAAGGAAATTGATCTACTAAAGGAAGCTTATCCAGAAGAGACCGAGTTCAAAGAGAATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTTCTTGTCCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCCGGGGTCTATGTAATCTATCTTCACGATCAATACAATTCGGCGCATCGCCACCCTTTTTACTTCTAAAAA]
consensusID : consensus_12606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1137 fasta sequence
[CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCGAGTCGCCACCGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGCTTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAGTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTACAAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAATA]
[+] EMBL AK061137 [CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCGAGTCGCCACCGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTTGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGCTTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAGTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTACAAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAATA]
[+] EMBL CF319401 [ CGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGCAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAtc ]
[+] EMBL BF430542 [ TCCTCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGCCGTCGTCGTTGGCCTCCGTGGCGGCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCGAAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACCTGCACCAACACCGGCTGCCGCCCCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAACATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCGCCTCGCGCTAGCCGCCCACGGTGCCTGTTGTCTGCACCGATGCCGGGAACACCGTAACGACGACGGTGAAGACGAGGAGAACACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCAGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCG TGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTT ]
[-] EMBL CF319402 [ CAACTATGGATCTAGCACGGGGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAGCAAGATAAAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGATCTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAGAGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTAGAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGTCATCATCATCGACCTTCAGAGGCTTGGAATCGACCGATGGGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGCCTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTAGTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTTCTTGTTCTAAAAaaa ]
consensusID : consensus_12606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[GAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAGCCCGAAGTCATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCGATCGATGAGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGAAGAGTCCGAATTCAAAGACGATGCAGCATGACAAGTGTTTCTATTAATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTAGTATCCGATAAGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTTCTTGTCCTATAAGGACTAGTGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAATATCTTTTGATCAATACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTTTACTAATCATCCCGTGGAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCTCCGGCGAATGGGTAAGTCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGCGTCGTTCAAGGCTGCATCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTGCCTACCTGATATCTCAATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAGTTGGAACTGTCTCGGTTAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATAATGTTGTTCTGAATAGATTTGTTATA]
[+] EMBL CB620324 [GAATCTATTTTATCTGGAATCTGGAACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAGCCCGAAGTCATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCGATCGATGAGAGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGGATCAATTAAAGGAAATTTATTTAGAAGAGTCCGAATTCAAAGACGATGCAGCATGACAAGTGTTTCTATTAATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTAGTATCCGATAAGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTTCTTGTCCTATAAGGACTAGTGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAATATCTTTTGATCAATACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTTTACTAATCATCCCGTGGAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCTCCGGCGAATGGGTAAGTCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGCGTCGTTCAAGGCTGCATCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTGCCTACCTGATATCTCAATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAGTTGGAACTGTCTCGGTTAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATAATGTTGTTCTGAATAGATTTGTTATA]
consensusID : consensus_12606#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence
[ATGCTATTGCTGCAAGAATTTGATAATGAGAATTTCACTGGAAATGACATCTGGTTTGAGTTCACTGAAGATGAAGAAAAAACAATTGAAAATCATGCAGCCATAAGCCCCCATCTCCTCTGCCGCAAGTCATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATCGACCGATGGGAGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGTGTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAC]
[-] EMBL CF325980 [ATGCTATTGCTGCAAGAATTTGATAATGAGAATTTCACTGGAAATGACATCTGGTTTGAGTTCACTGAAGATGAAGAAAAAACAATTGAAAATCATGCAGCCATAAGCCCCCATCTCCTCTGCCGCAAGTCATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATCGACCGATGGGAGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGTGTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAC]
[-] EMBL CF324647 [ GCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTATCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAGGAGTATGCGGCATGGCAAGTTATCTATTAATTAGGAATAGTTTGTTAGTTCTTTTTATCTTTAGGAAAGTGTTTAGTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGTCCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGGAATATTTCTCGATCAATACAACTACTCGGCGCATCGCCATCCTCTTTAAAAAAAAAAAAAAAAAAAAAAAc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12606#0 CGGGATAAACTGGATAAGATCTCTGCCTTATCTCCTTCCCTTCCCCTCCACAAACTCACT 60
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 CACTCTCTCTCTCTGGATAAGGCCGAGAAGGCTGAGAAGAAGCCAGCCAGAAGGAAGGGA 120
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 TCGTCGTCGTCGTCTTCGGCGGCCGAGGAGGACGACGACGGCACGGCGTCGGTGAGGTCA 180
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 ----------------------CACCCGTCCATCCCAATCTCGCTTCCACCGACCAAGCG 38
consensus_12606#0 GGGGGCGTCGGGGGTGATCTCGCCGCACTTCCTCGACGCCGTCCTCCGCCCGCTGCGGCG 240
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 AGTCGCCACCGGCTCGTTCCTCAGCCTCCGCTTCCGTCTTCTCTACTCCTCCTCCCATCC 98
consensus_12606#0 CCGCCTCCGCGCGCACGCTCCCCGTCACTGCCGGCGCCGGGGCTGCTGCCCTCCTCCCTC 300
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 TCCATCCTGAGCGTGTCCTCTCCATCAAGCTCTACGGCGTCGTCGTTGGTCTCCGTGGCG 158
consensus_12606#0 GCGCTC--CTCGCCAAGGTCTCCATCGCCTGCTTCTCATGAGCCACTTGTGCCGCCGTCC 358
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 GCGTCGAGCCCGCTGGTGTCGCCGAATGCGAAGCCCCGCGTGCAGCCGAAGCTCCCGCCG 218
consensus_12606#0 TTGCCCGCTGCTCCTGCCGCCTCCTT-GCCGGTGAGCGCAGGTGGATCCTCCGCTGCCAC 417
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 AAGACGAAGCTGACCACCATCACCTTTAGCCCCCACCACAAGCGTGACTACCAGGTCACC 278
consensus_12606#0 TGTAGAAGCAGAAGAAGCCGGCGGTCCCGGTGCCTCGGCTGCCGCAACGCCGGCGACAAC 477
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 TGCACCAACACCGGCTGCCGCC---CCTGCGTCGTCTCCTGCCCTTCCAACTGCCCCAAC 335
consensus_12606#0 CTGCTCTAGAACCTCTACCTCCTCTTCTTTGCCATCAACTTGAAGATGAAGTTGCTGCAG 537
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 ATGTGCCTCGTCGCTTGCGCCTACTGCCTCACCTTCTGCCCG----CCTCGCGCTAGCCG 391
consensus_12606#0 CGCGTGTTCTTGGAGATGGTCACCGTTGACTTCCGGCCGGACCTCACCACCTTCAGCGTC 597
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 CCCACGGTGCCTGTTGTCTGCACCGATG----CCGGGAACACCGCAACGACGACGGTGAA 447
consensus_12606#0 TGCGCCACAGCCTTCTCCATCAGGCATCAGTCGTCGTGATACCTCAGTATTAGGCCTGGT 657
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 GACGAGGAGAAC-------ACAGGCGACGGTGGCCATGGCAACTATGGATCTAGCACGG- 499
consensus_12606#0 ATCCACAAGTATCAGGCCTGGTACAAGATTACTTAGTGTCAAGCGCTCTTCGTCGATGTC 717
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 -------GGTGGCCAGCAAGGCGGAAGTTGGCGATGGGTGAACGGCAGCAAG-CAAGATA 551
consensus_12606#0 GACGCTATCCTCCTCTCATCAGTGTTATGTGCAGGTACGGACTGATACCTAGGTATCAAG 777
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 AAGGCCAGAGACAACCCAATATTGAGGTCCCCCAGTAGCAGCAAGCCTAGGTAAATCGAT 611
consensus_12606#0 CTTGG-TACCAAGTACTAGGGGTATGGTACCTCAAGGGTATCATGCCTGGTACCTAAGTA 836
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 CTTGGATGGATTGGAGTTCCCCGTTGATCCCTCTGGTGATTTTATTTTGGTGGATTAG-- 669
consensus_12606#0 CCATCCAGTATCCATGGGTACCATGTGCATGGTATTAGGT-ACCAGATACCTATA-ATTA 894
consensus_12606#3 ----------------------------ATGCTATT-GCT-GCAAGAATTTGATA-ATGA 29
consensus_12606#2 ------------------------------------------------------------
consensus_12606#1 --AGTTCGATTCCGGAGTTCTTCCGTGCATCGCTCTGTTTGATTTTATTAGGATAGATTA 727
consensus_12606#0 TCAGGTACCACATGGTACCTGATACCTATTGTACCTGATACCTCGAGGGTATCATGCATG 954
consensus_12606#3 ----GAATTTCACTGGAAATGACATCTGGTTTG---AGTTCACTGAAGATGA-AGAAAAA 81
consensus_12606#2 --------------------------------------------GAATCTATTTTATCTG 16
consensus_12606#1 GAGTGTAATTCTATCTACTTTATCTTTGCGAGTTTGGAAATTTGGAATCTATTTTATCTG 787
** *
consensus_12606#0 GTACCTAGGTACCATCCATGG--GTATCTGTTAACAGTGAAA-TTTGGTAAGCCCAGAGT 1011
consensus_12606#3 ACAATTGAAAATCAT--------GCAGCCATAAGC--CCCCA-TCTCCTCTGCCGCAAGT 130
consensus_12606#2 GAATCTGGA-ACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAGCCCGAAGT 75
consensus_12606#1 GAATCTGGA-ACCATCGCTAGCTGCTGGTGTTAACGCCAAAAATTTGGTAAACCCGAAGT 846
* * * *** * * * * * * * * ** ***
consensus_12606#0 AGTCATCGGCTTAGAGTCAGCATCGGCTTCGAAGTCCTGAGATTAG------CCGATGAG 1065
consensus_12606#3 CATCATCGGCCTAAAGTCAGTATCGGCTTCAGAGTCTTGGAATTGGAATCGACCGATGGG 190
consensus_12606#2 CATCATCGACCTAGAGTCAGTATCGGCTTCAGAGTCTTGGAATCGA------TCGATGAG 129
consensus_12606#1 CATCATCA--------TCGAC-----CTTCAGAGGCTTGGAATCGA------CCGATGGG 887
***** ** **** ** * ** ** ***** *
consensus_12606#0 AGTTGTCAAGTCGTCAGTTGTCGGATTCTTGCTATATTCGGTT------AAGGAAATTGA 1119
consensus_12606#3 AGTTATCAAATCGCCAGCAGTTGTGTTCATGGTGGAGTCAGATCAATTAAAGGAAATTTA 250
consensus_12606#2 AGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGG------------------A 171
consensus_12606#1 AGTTATAAAATCGCCAGCAGTTGTGTTCTTGGTGGAGTTGG------------------A 929
**** * ** *** *** ** * *** ** * * * * *
consensus_12606#0 TCTACTAAAGGAAGCTTATCCAAAAGAGACCGAGTTCAAA-GAGAATGCGGCATGGCAAG 1178
consensus_12606#3 TCCAAAAGATTGAGTTCAAGGAGAAGAGTTCGAGTTCAAG-GAGTATGCGGCATGGCAAG 309
consensus_12606#2 TCAATTAAAGGAAATTTATTTAGAAGAGTCCGAATTCAAA-GACGATGCAGCATGACAAG 230
consensus_12606#1 TCAATTAAAGGAAATTTATTTAGATGAGTCCGAATTCAAAAGACGATGCAGC-------- 981
** * * * * * * * * *** *** ***** ** **** **
consensus_12606#0 T-TATCTATTAATTAGGAATAGTTTGTTAGTTTCCTTTTATCTTTAGGAAAGTGTGTTTA 1237
consensus_12606#3 T-TATCTATTAATTAGGAATAGTTTGTTAGTT-CTTTTTATCTTTAGGAAAGTG--TTTA 365
consensus_12606#2 TGTTTCTATTAATTAGGAATAGTTTGTCTGTTTTCTTTTATCTTTAGGAAGGTGTGTTTA 290
consensus_12606#1 ----------------------TTTGTCTGTTTTCTTTTATCTTTAGGAATGTATGTTTA 1019
***** *** *************** ** ****
consensus_12606#0 GTGTCCTATAAGGACTTTATCTTTTCCTTTTATCTTTAGGAAAGTTTCTTT----CTTGT 1293
consensus_12606#3 GTGTCTGATAAGAACTTAATGTTTTCTTTTTATCTTTAGGAAAGTTTCTCTTGTCCTTGT 425
consensus_12606#2 GTATCCGATAAGCACTTTATGTTTTCCTTTTATCCTTAGTAAAGTCTCTTT----CTTGT 346
consensus_12606#1 GTATCCGATAAGCATTTTATGTTTTTCTTTTATCCTTAGTAAAGTCTTTTT----CTTGT 1075
** ** ***** * ** ** **** ******* **** ***** * * * *****
consensus_12606#0 CCGACAAGGACTTGTATCAACCCATGGGTATAAATATGTACACCTGGGGTCTATGTAATC 1353
consensus_12606#3 CCTACAAGGACAAGTATCTCCCCATGGGTATAAATATGTACACCCGGAGTCATTGTAAGG 485
consensus_12606#2 CCTATAAGGACTAGTGTCTCCCCATGAGTATAAATATGTACACCCGGGGTCATTATAAAA 406
consensus_12606#1 TCTACAAGGACTAGTATCTCCCCATTAGTATAAATATATACACCCGGGGTCATTATAAAA 1135
* * ****** ** ** ***** ********** ****** ** *** * ***
consensus_12606#0 TAT-CTTCACGATCAATACAATT---C--GGCGCATCGCCACCCTTTTT------ACTTC 1401
consensus_12606#3 AATATTTCTCGATCAATACAACTACTC--GGCGCATCGCCATCCTCTTT------AAAAA 537
consensus_12606#2 TAT--CTTTTGATCAATACAACTACTCTGGGCGCATCGCCACCCTCTTTTCTGAGGTTTT 464
consensus_12606#1 TA---------------------------------------------------------- 1137
*
consensus_12606#0 TAAAAA------------------------------------------------------ 1407
consensus_12606#3 AAAAAAAAAAAAAAAAAAAC---------------------------------------- 557
consensus_12606#2 TACTAATCATCCCGTGGAATTTGGCACCTGACGTGGGGTTGCATCGGTTCAGTTTGATCT 524
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 ------------------------------------------------------------
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 CCGGCGAATGGGTAAGTCCTACGTTCCGCCGGGGTTGGTGAATCTATCGTCTACATCGGC 584
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 ------------------------------------------------------------
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 GTCGTTCAAGGCTGCATCGCTCCGATCTCTTGGATCGCTCTGGTTTGGTTAATATATTTG 644
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 ------------------------------------------------------------
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 CCTACCTGATATCTCAATTCTATCTCTAATTGCATTGTGTTTAGAGACGCATCGGTTTAG 704
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 ------------------------------------------------------------
consensus_12606#3 ------------------------------------------------------------
consensus_12606#2 TTGGAACTGTCTCGGTTAGGTCTGATCTTCTATCTTAGCCGATATATCTCTACAATCATA 764
consensus_12606#1 ------------------------------------------------------------
consensus_12606#0 --------------------------
consensus_12606#3 --------------------------
consensus_12606#2 ATGTTGTTCTGAATAGATTTGTTATA 790
consensus_12606#1 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||