cluster # 12612

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12612 cluster # 12612 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12612#0 length = 1531 sequences # 4
consensus_12612#1 length = 1320 sequences # 5

consensus_12612#2 length = 675 sequences # 1
consensus_12612#3 length = 158 sequences # 1

consensusID : consensus_12612#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1531
fasta sequence

                              [TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCGACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAGGCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCTTCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACGGCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGATGGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAGGCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCTATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTGGAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGTGTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAGCAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTATGAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCTATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCGAGAATGATTGTATAC]

[+] EMBL AK069765             [TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCGACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAGGCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCTTCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACGGCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGATGGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAGGCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCTATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTGGAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGTGTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAGCAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTATGAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCTATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATGGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGGTAGTCAATGATGTATCGACATAGCAACATTAAATATTGAA                                                                                                            ]
[-] EMBL CB673259             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGCTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCGAGAATGATTGTATAC]
[-] EMBL CF313785             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATTAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAAaaaa                                                                                                                                         ]
[+] EMBL CB673258             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCGAGAATGATTGTATA ]




>consensus_12612#0
TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCG
ACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAG
GCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCT
TCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACG
GCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGAT
GGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAG
GCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTT
CTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCT
ATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTG
GAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGT
GTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAG
CAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTAT
GAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCT
ATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTA
GGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGAT
GAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAA
AGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGT
GAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTT
CTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCT
TCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGC
TTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTAT
TGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAA
GAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACAC
AGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAAC
AGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAG
TGGATTGTTCCTATCGAGAATGATTGTATAC

consensusID : consensus_12612#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1320
fasta sequence

                              [TTGGGACGCGGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAGAGAATGTGTTTTCTTTGAGTACCAACTAGACTAGGTGCTTAATGATCCTATTAACGCATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAAAATGAGTAGTCCAAGATAT]

[+] EMBL CB657074             [TTGGGACGCGGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTANGCGTCAAAAGTGCTCTTCTACGCCACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK059924             [         GGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTC                                                                                                                                      ]
[-] EMBL CB657980             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAGAGAATGTGTTT                                                                                                         ]
[-] EMBL CB657075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTTTTTTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTTTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTTTCCCAGAGCTGGGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTTTAATCCTGTAATCCAAACCTTATACCAGTTTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATTTTTGGGCTTTCATTTTAGGAAGAAAAGAGAATGTGTTTTCTTTGAGTACCAACTAGACTAGGTGCTTAATGATCCTATTAACGCATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAAAATGAGTAGTCCAAGATAT]
[+] EMBL BE230455             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCTGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGTGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAACTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAAAAAAa                                                                                                               ]




>consensus_12612#1
TTGGGACGCGGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCA
CCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCT
GCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCG
GCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGAC
GCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAG
GCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTT
CTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCT
ATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTG
GAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGT
GGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAG
CAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTAT
GAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCT
ATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTA
GGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGAT
GAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAA
AGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGC
GAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTC
CCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAG
CGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTG
AATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGA
AAAGAGAATGTGTTTTCTTTGAGTACCAACTAGACTAGGTGCTTAATGATCCTATTAACG
CATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAAAATGAGTAGTCCAAGATAT

consensusID : consensus_12612#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [GTGGAGCCTTAGGGGCCAAAAGGCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCAGGTGCACAAAAAAGCCTGCTTGCGGGGAGCCTTCCCCCGTCCCCAAGGATGTGATGAGCATCCAATGGTCAGGCATGAAACTTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCCATGCACTTCTGGAGGAATTCGCCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAAGTCGCGCTCAGCATGCTGGAATCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTGCAGACTCCTGGGGGGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCCCTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTTTCCTGGTCTCCTGCGGCTTATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAGACTTTACACAGATAGTCAATGATGTATCGACATAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762631             [GTGGAGCCTTAGGGGCCAAAAGGCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCAGGTGCACAAAAAAGCCTGCTTGCGGGGAGCCTTCCCCCGTCCCCAAGGATGTGATGAGCATCCAATGGTCAGGCATGAAACTTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCCATGCACTTCTGGAGGAATTCGCCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAAGTCGCGCTCAGCATGCTGGAATCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTGCAGACTCCTGGGGGGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCCCTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTTTCCTGGTCTCCTGCGGCTTATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAGACTTTACACAGATAGTCAATGATGTATCGACATAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAAAAAAAAAAAAAAAAA]




>consensus_12612#2
GTGGAGCCTTAGGGGCCAAAAGGCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCA
GGTGCACAAAAAAGCCTGCTTGCGGGGAGCCTTCCCCCGTCCCCAAGGATGTGATGAGCA
TCCAATGGTCAGGCATGAAACTTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCC
ATGCACTTCTGGAGGAATTCGCCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAA
GTCGCGCTCAGCATGCTGGAATCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTG
CAGACTCCTGGGGGGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCT
ATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTC
CCTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGT
TTTTCCTGGTCTCCTGCGGCTTATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAA
TTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAGACTTTACACAGA
TAGTCAATGATGTATCGACATAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAA
AAAAAAAAAAAAAAA

consensusID : consensus_12612#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [CCGCTCCCGGAATNTCCCGGCTCNACCCACCCTCCGGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAACAGAAAGAGAACATAGGCGGACACGTTCTAGAGCAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCAAAA]

[+] EMBL BM038548             [CCGCTCCCGGAATNTCCCGGCTCNACCCACCCTCCGGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAACAGAAAGAGAACATAGGCGGACACGTTCTAGAGCAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCAAAA]




>consensus_12612#3
CCGCTCCCGGAATNTCCCGGCTCNACCCACCCTCCGGTATCGACATAGCAACATTAAATA
TTGAAGGACTTCATGAGCAACAGAAAGAGAACATAGGCGGACACGTTCTAGAGCAAGGTT
GCTGATTACCTGTTAAGAGTGGATTGTTCCTATCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12612#0      TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCG 60
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      ------------------------------------------------------------
                                                                                   

consensus_12612#0      ACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAG 120
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      ------------------------------------------------------------
                                                                                   

consensus_12612#0      GCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCT 180
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      ----------------------------------TTGGGACGCGGGATTCCCTCGCCGCC 26
                                                                                   

consensus_12612#0      TCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACG 240
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      GCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGG 86
                                                                                   

consensus_12612#0      GCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGAT 300
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      CTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGAT 146
                                                                                   

consensus_12612#0      GGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAG 360
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      GGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCG 206
                                                                                   

consensus_12612#0      GCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTT 420
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      GGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGC 266
                                                                                   

consensus_12612#0      CTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCT 480
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      TGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCA 326
                                                                                   

consensus_12612#0      ATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTG 540
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      AGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAAT 386
                                                                                   

consensus_12612#0      GAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGT 600
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      TGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCT 446
                                                                                   

consensus_12612#0      GTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAG 660
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      GCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGC 506
                                                                                   

consensus_12612#0      CAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTAT 720
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      TATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACC 566
                                                                                   

consensus_12612#0      GAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCT 780
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      TTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAG 626
                                                                                   

consensus_12612#0      ATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTA 840
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      ------------------------------------------------------------
consensus_12612#1      GGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACT 686
                                                                                   

consensus_12612#0      GGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGAT 900
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      --------------------------------------GTGGAGCCTTAGGGGCCAAAAG 22
consensus_12612#1      AAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAG 746
                                                                                   

consensus_12612#0      GAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAA 960
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      GCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCAGGTGCACAAAAAAGCCTGCTTG 82
consensus_12612#1      TGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTC 806
                                                                                   

consensus_12612#0      AGCATTGCACTTCTGGAGGAATTCGCGAAG-GATCCTGAGCCTATAGTCTCCCAAAGCTG 1019
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      CGGGGAGCCTTCCCCCGTCCCCAAGGATGT-GATGAGCATCCAATGGTCAGGCATGAAAC 141
consensus_12612#1      AGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGC 866
                                                                                   

consensus_12612#0      TGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTT 1079
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      TTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCCATGCACTTCTGGAGGAATTCG 201
consensus_12612#1      T-GCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTG 925
                                                                                   

consensus_12612#0      TCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGC 1139
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      CCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAAGTCGCGCTCAGCATGCTGGAA 261
consensus_12612#1      CAAAGGACCCTGAGCCAATAGTCT-CCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAA 984
                                                                                   

consensus_12612#0      TTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACG 1199
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      TCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTGCAGACTCCTGGGGGGCAGCAG 321
consensus_12612#1      TATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAG 1044
                                                                                   

consensus_12612#0      CTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTA 1259
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      GAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCT 381
consensus_12612#1      GAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCT--------GGA 1096
                                                                                   

consensus_12612#0      TTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTA 1319
consensus_12612#3      ------------------------------------------------------------
consensus_12612#2      GACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCCCTCCTATCAATAGTTATACC 441
consensus_12612#1      ATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTC 1156
                                                                                   

consensus_12612#0      AGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACA 1379
consensus_12612#3      --------------------------------------CCGCTCCCGGAATNTCCCGGCT 22
consensus_12612#2      ATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTTTCCTGGTCTCCTGCGGCT 501
consensus_12612#1      AAAAGGAT--------TTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAGAGAA 1208
                                                                  *   *            

consensus_12612#0      CAG--ATAGTCAATGATGTATCGACATAGCAACATTAAATAT---TGAAG------GACT 1428
consensus_12612#3      CNA--CCCACCCTCCG-GTATCGACATAGCAACATTAAATAT---TGAAG------GACT 70
consensus_12612#2      TATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTT 561
consensus_12612#1      TGT---GTTTTCTTTGAGTACCAA-----CTAGACTAGGTGC---TTAAT------GATC 1251
                                        *   * *     * *       *     * *        *   

consensus_12612#0      TCATGAGCAAACAGAAAGAGAACAATAGGC---GGACACGTTCTAGAGCAAAGGTTGCTG 1485
consensus_12612#3      TCATGAGCAA-CAGAAAGAGAACA-TAGGC---GGACACGTTCTAGAGCAA-GGTTGCTG 124
consensus_12612#2      TCATG-GTAACTAGAAATACCATGTAAGACTTTACACAGATAGTCAATGATGTATCGACA 620
consensus_12612#1      CTAT---TAA-CGCATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAA--AATG 1305
                         **    **    *                    ***  *  *     *          

consensus_12612#0      -ATTACCTGTTAAGAGTGGATTGTTCCT---ATCGAGAATGATTGTATAC----- 1531
consensus_12612#3      -ATTACCTGTTAAGAGTGGATTGTTCCT---ATCAAAA----------------- 158
consensus_12612#2      TAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAAAAAAAAAAAAAAAAA 675
consensus_12612#1      -AGTAGTCCAAGATAT--------------------------------------- 1320
                        *  *       * *