These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2640 fasta sequence [ACTGCCTCCCCTCGTCCGTCCCCAGTTCGTCACCCTTCATCTCCACAGCGCCAGACAATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACCGCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGCGTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGGCGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGCTGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCGGAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGTCCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGGAAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGGCGTGCATGCTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTCTCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACATCCAAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGGACTGGGGGGAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGTACCCGGCGGGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATATGGATAGTCCATCAGAGGATACTACATTTTCCTTCTTGTTGGAGAAGTTGGGGATAATGCCAGGGTAGACAGCGAGGATCAACTGGATACAACTCCTTCAAAAGACAACAGATGGTTGTTCGGATGTGGATGGAAAATTGGAAACAACTAGTAGTGTAGTACTATTTCTAATCCAATACGCTTAATAAAGATATACCAAGCAGGCAAGCACAACGTTGATCTCAACCGTTGGCAGTAATCCTTTACATATGGTAGTACCAGAATTTCCAGACAACAGATTTATCTACCACCACACACATACATTTCGCTGCAAAATTATGTAAAGCTAATCACAACCCAGCCAAGCTGACGAGATACTGGTTAGGAATAGGGCCCTAGAGAGAGAACATGGAGGGGACAAAAATGAAAGACGGCTACAGTGACAACGAGAACATAGATTGTTCACTGGTGTGATAAATCTAGTGAGAACATTTCTCAACAGAAACAAGCAAGAAAGCAAACGAACTATGGTAACGACGAAATGATATGATACATCGGGATAGTAAAATGGTGCTCAGGCCCTGGCAACGAGTTTTTGCTGCCTCCTTAGATGACGGTTCTGCTCTTGTCGTTGTATCCGGCACATAGATGCCTTCTCCTTGAGCTCTTGGAATGCCCGCATGGTGTCCACGTCGAACCCGCCTGCAAACTGCAGCAAACGAGGAGTATGGATGTGATTCGTTTCAAAGTTGCACCTTGGAAGAAAATGTAAGCATGAATTCTTTTCAGAAATTATTCATGCGCATCTTAACATCTTAGCGAGTAAATATATACCTGGTGTACCCTGAAGGCGAATCGCACTCCTTGAAGCATTAGTTCTTCTTCGTCAGGACCACCCTTTATGGCCTCAAGTTCAGAAGAGACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTACACCAAAGGTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAGAAATCACAGATATGCCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAGAGAGGACTGCTTTCATTTGTTAGCCTCAAAAGTTAGGATATGAAGCGGCCAAACGACAGGACAGACCAATCAACTCAGTGATTGCAGATTGATGAGGGCATGTGTTTATGTTTCTAATTTTCCTACCAATTTGTAAACTGTAAATGTTTTTTCGCGAATGCAATAAACTGTAAATGTAAAGACTTCATGTGCAATTTACAAA] [+] EMBL AK073036 [ACTGCCTCCCCTCGTCCGTCCCCAGTTCGTCACCCTTCATCTCCACAGCGCCAGACAATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACCGCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGCGTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGGCGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGCTGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCGGAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGTCCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGGAAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGGCGTGCATGCTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTCTCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACATCCAAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGGACTGGGGGGAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGTACCCGGCGGGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATATGGATAGTCCATCAGAGGATACTACATTTTCCTTCTTGTTGGAGAAGTTGGGGATAATGCCAGGGTAGACAGCGAGGATCAACTGGATACAACTCCTTCAAAAGACAACAGATGGTTGTTCGGATGTGGATGGAAAATTGGAAACAACTAGTAGTGTAGTACTATTTCTAATCCAATACGCTTAATAAAGATATACCAAGCAGGCAAGCACAACGTTGATCTCAACCGTTGGCAGTAATCCTTTACATATGGTAGTACCAGAATTTCCAGACAACAGATTTATCTACCACCACACACATACATTTCGCTGCAAAATTATGTAAAGCTAATCACAACCCAGCCAAGCTGACGAGATACTGGTTAGGAATAGGGCCCTAGAGAGAGAACATGGAGGGGACAAAAATGAAAGACGGCTACAGTGACAACGAGAACATAGATTGTTCACTGGTGTGATAAATCTAGTGAGAACATTTCTCAACAGAAACAAGCAAGAAAGCAAACGAACTATGGTAACGACGAAATGATATGATACATCGGGATAGTAAAATGGTGCTCAGGCCCTGGCAACGAGTTTTTGCTGCCTCCTTAGATGACGGTTCTGCTCTTGTCGTTGTATCCGGCACATAGATGCCTTCTCCTTGAGCTCTTGGAATGCCCGCATGGTGTCCACGTCGAACCCGCCTGCAAACTGCAGCAAACGAGGAGTATGGATGTGATTCGTTTCAAAGTTGCACCTTGGAAGAAAATGTAAGCATGAATTCTTTTCAGAAATTATTCATGCGCATCTTAACATCTTAGCGAGTAAATATATACCTGGTGTACCCTGAAGGCGAATCGCACTCCTTGAAGCATTAGTTCTTCTTCGTCAGGACCACCCTTTATGGCCTCAAGTTCAGAAGAGACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTACACCAAAGGTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAGAAATCACAGATATGCCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAGAGAGGACTGCTTTCATTTGTTAGCCTCAAAAGTTAGGATATGAAGCGGCCAAACGACAGGACAGACCAATCAACTCAGTGATTGCAGATTGATGAGGGCATGTGTTTATGTTTCTAATTTTCCTACCAATTTGTAAACTGTAAATGTTTTTTCGCGAATGCAATAAACTGTAAATGTAAAGACTTCATGTGCAATTTACAAA] [+] EMBL AK069291 [ TCCCCAGTTCGTCACCCTTCATCTCCACAGCGCCAGACAATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACCGCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGCGTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGGCGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGCTGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCGGAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGTCCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGGAAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGGCGTGCATGCTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTCTCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACATCCAAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGGACTGGGGGGAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGTACCCGGCGGGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATATGGATAGTCCATCAGAGGATACTACATTTTCCTTCTTGTTGGAGAAGTTGGGGATAATGCCAGGGTAGACAGCGAGGATCAACTGGATACAACTCCTTCAAAAGACAACAGATGGTTGTTCGGATGTGGATGGAAAATTGGAAACAACTAGTAGTGTAGTACTATTTCTAATCCAATACGCTTAATAAAGATATACCAA ] [+] EMBL CB643842 [ ACCCTTCATCTCCACAGCGCCAGACAATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACCGCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGCGTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGGCGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGCTGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCGGAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGTCCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGGAAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGGCGTGCATGCTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACAT ] [+] EMBL CB649717 [ CCCTTCATCTCCACAGCGCCAGACAATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACCGCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGCGTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGGCGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGCTGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCGGAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGTCCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGGAAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCACTGGCGTGCATGCTGCACGCGGACGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGT ] [+] EMBL AU070531 [ CAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTCTCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACATCCAAGACCAGGGTCTACTTCCANGGCATCTCTCCAACCCACTACAACGGA ] [+] EMBL AU108199 [ CAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGTGC ] [-] EMBL CB643843 [ CGACTCCATCTCCGGCGACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTCTCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACATCCAAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGGACTGGGGGGAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGTACCCGGCGGGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATAAATGGATAGTCCATCAGAGGAT ] consensusID : consensus_12619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1382 fasta sequence [TTTCCAGACAACAGATTTATCTACCACCACACACATACATTTCGCTGCAAAATTATGTAAAGCTAATCACAACCCAGCCAAGCTGACGAGATACTGGTTAGGAATAGGGCCCTAGAGAGAGAACATGGAGGGGACAAAAATGAAAGACGGCTACAGTGACAACGAGAACATAGATTGTTCACTGGTGTGATAAATCTAGTGAGAACATTTCTCAACAGAAACAAGCAAGAAAGCAAACGAACTATGGTAACGACGAAATGATATGATACATCGGGATAGTAAAATGGTGCTCAGGCCCTGGCAACGAGTTTTTGCTGCCTCCTTAGATGACGGTTCTGCTCTTGTCGTTGTATCCGGCACATAGATGCCTTCTCCTTGAGCTCTTGGAATGCCCGCATGGTGTCCACGTCGAACCCGCCTGCAAACTGGTGTACCCTGAAGGCGAATCGCACTCCTTGAAGCATTAGTTCTTCTTCGTCAGGACCACCCTTTATGGCCTCAAGTTCAGAAGAGACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTACACCAAAGGTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAGAAATCACAGATATGCCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAGAGAGGACTGCTTTCATTTGTTAGCCTCAAAAGTTAGGATATGAAGCGGCCAAACGACAGGACAGACCAATCAACTCAGTGATTGCAGATTGATGAGGGCATGTGTTTATGTTTCTAATTTTCCTACCAATTTGTAAACTGTAAATGTTTTTTCGCGAATGCAATAAACTGTAAATGTAAAGACTTCATGTGCAATTTACAAACTGATAGGCCAATTACAAACTTCATAATAGTTCATATCATGTCTTCTTTCTACAAGTCTACAACGATAAGATGTGCACAGGTGAAGAATTGTCCCGATTGATCAGCAAAGCTGCAAAGGTACCAAATGCAAATGCATGCTCACAGTCACAGATGCATGAGGGAAATCTGACACCTGAGCAGCCATGGAGCCCCATCTTTCAGTACGTAGTGATCAGAAAATGCTTAACTTATTCAAGCCAAACGTGACAATTATCTTTTTCTTTCAGAAGCCTTAAACAAACCTAGCTGCCGCAGAACAGAACAACTATCCACTTGTCAGATGTTCTCGCTACTTACAATCTAACGAAGTGACAAAACTGTAGATCTCAGATCAAACGGTATCCAAGAAATTTTACACTAGTAGTACTAGCTTAGCTTCTCTCGTGAGGCTCCAAATCCTGCCGAAACACACAAGCAGCAAATCCACACAAACATCCACACGGTGCA] [-] EMBL AK058938 [TTTCCAGACAACAGATTTATCTACCACCACACACATACATTTCGCTGCAAAATTATGTAAAGCTAATCACAACCCAGCCAAGCTGACGAGATACTGGTTAGGAATAGGGCCCTAGAGAGAGAACATGGAGGGGACAAAAATGAAAGACGGCTACAGTGACAACGAGAACATAGATTGTTCACTGGTGTGATAAATCTAGTGAGAACATTTCTCAACAGAAACAAGCAAGAAAGCAAACGAACTATGGTAACGACGAAATGATATGATACATCGGGATAGTAAAATGGTGCTCAGGCCCTGGCAACGAGTTTTTGCTGCCTCCTTAGATGACGGTTCTGCTCTTGTCGTTGTATCCGGCACATAGATGCCTTCTCCTTGAGCTCTTGGAATGCCCGCATGGTGTCCACGTCGAACCCGCCTGCAAACTGGTGTACCCTGAAGGCGAATCGCACTCCTTGAAGCATTAGTTCTTCTTCGTCAGGACCACCCTTTATGGCCTCAAGTTCAGAAGAGACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTACACCAAAGGTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAGAAATCACAGATATGCCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAGAGAGGACTGCTTTCATTTGTTAGCCTCAAAAGTTAGGATATGAAGCGGCCAAACGACAGGACAGACCAATCAACTCAGTGATTGCAGATTGATGAGGGCATGTGTTTATGTTTCTAATTTTCCTACCAATTTGTAAACTGTAAATGTTTTTTCGCGAATGCAATAAACTGTAAATGTAAAGACTTCATGTGCAATTTACAAACTGATAGGCCAATTACAAACTTCATAATAGTTCATATCATGTCTTCTTTCTACAAGTCTACAACGATAAGATGTGCACAGGTGAAGAATTGTCCCGATTGATCAGCAAAGCTGCAAAGGTACCAAATGCAAATGCATGCTCACAGTCACAGATGCATGAGGGAAATCTGACACCTGAGCAGCCATGGAGCCCCATCTTTCAGTACGTAGTGATCAGAAAATGCTTAACTTATTCAAGCCAAACGTGACAATTATCTTTTTCTTTCAGAAGCCTTAAACAAACCTAGCTGCCGCAGAACAGAACAACTATCCACTTGTCAGATGTTCTCGCTACTTACAATCTAACGAAGTGACAAAACTGTAGATCTCAGATCAAACGGTATCCAAGAAATTTTACACTAGTAGTACTAGCTTAGCTTCTCTCGTGAGGCTCCAAATCCTGCCGAAACACACAAGCAGCAAATCCACACAAACATCCACACGGTGCA] consensusID : consensus_12619#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence [CAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCGGTGTTCCTGCTCGANATCCNACTNTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATAAAAAAAAAAAAAAAAAAGAANACCCANNCGTACNCN] [+] EMBL AU083573 [CAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCGGTGTTCCTGCTCGANATCCNACTNTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATAAAAAAAAAAA ] [+] EMBL AU033061 [ GGGCACCCGTCGGGGTACANCGNCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGNANNCNTGGANCCAGATCCTGTACGCCTCGCNCCTTGCATAGAGGGAAANAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGNTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATAAAAAAAAAAAAAAAAAAGAANACCCANNCGTACNCN] consensusID : consensus_12619#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [GCGCGATCNCCGGCATGTCGAAGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACANCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATANAGGGAAANAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATATGGATAGTCCATCAGAGGATNCTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU222955 [GCGCGATCNCCGGCATGTCGAAGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGGTACANCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATANAGGGAAANAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATATGGATAGTCCATCAGAGGATNCTAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 ACTGCCTCCCCTCGTCCGTCCCCAGTTCGTCACCCTTCATCTCCACAGCGCCAGACAATG 60 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACCGCC 120 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGCGTC 180 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGGCGC 240 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGCTGG 300 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCGGAG 360 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 TTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGTCCC 420 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGGAAG 480 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGGCGTGCATG 540 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCCACC 600 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTGGAC 660 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 ATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCGTGG 720 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGAGAC 780 consensus_12619#1 -------------------------------------------TTTCCAGACAACAGATT 17 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTCTCG 840 consensus_12619#1 TATCTACCACCACACACATACATTTCGCTGCAAAATTATGTAAAGCTAATCACAACCCAG 77 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACATCC 900 consensus_12619#1 CCAAGCTGACGAGATACTGGTTAGGAATAGGGCCCTAGAGAGAGAACATGGAGGGGACAA 137 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGGACTGGGGG 960 consensus_12619#1 AAATGAAAGACGGCTACAGTGACAACGAGAACATAGATTGTTCACTGGTGTGATAAATCT 197 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGTACCCGGCG 1020 consensus_12619#1 AGTGAGAACATTTCTCAACAGAAACAAGCAAGAAAGCAAACGAACTATGGTAACGACGAA 257 consensus_12619#2 ---------------CAGAGCGCGGTGAGGAGCGCGATCGCCGGCAT---GTCGAAGCCG 42 consensus_12619#3 -------------------------------GCGCGATCNCCGGCAT---GTCGAAGCCG 26 consensus_12619#0 GGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCAT---GTCGAAGCCG 1077 consensus_12619#1 ATGATATGATACATCGGGATAGTAAAATGGTGCTCAGGCCCTGGCAACGAGTTTTTGCTG 317 ** * * * **** ** ** * consensus_12619#2 GTGTTCCTGCTCGANATCCNACTN-TGTCGCAGCTGAGGAGGGACGGGCACCCG------ 95 consensus_12619#3 GTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCG------ 80 consensus_12619#0 GTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCG------ 1131 consensus_12619#1 CCTCCTTAGATGACGGTTCTGCTCTTGTCGTTGTATCCGGCACATAGATGCCTTCTCCTT 377 * * * ** ***** * * * * ** consensus_12619#2 ------TCGGGGTACA---GCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTC 146 consensus_12619#3 ------TCGGGGTACA---NCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTC 131 consensus_12619#0 ------TCGGGGTACA---GCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTC 1182 consensus_12619#1 GAGCTCTTGGAATGCCCGCATGGTGTCCACGTCGAACCCGCCTGCAAACTGGTGTACCCT 437 * ** * * ** * **** * ** ***** * ** ** consensus_12619#2 GCCGGCGTGCCGGACGCATGGAACCA---GATCCTGTACGCCTCGCTCCTTGCATAGAGG 203 consensus_12619#3 GCCGGCGTGCCGGACGCATGGAACCA---GATCCTGTACGCCTCGCTCCTTGCATANAGG 188 consensus_12619#0 GCCGGCGTGCCGGACGCATGGAACCA---GATCCTGTACGCCTCGCTCCTTGCATAGAGG 1239 consensus_12619#1 GAAGGCGAATCGCACTCCTTGAAGCATTAGTTCTTCTTCGTCAGGACCACCCTTTATGGC 497 * **** ** ** * * *** ** * ** * * ** * * * ** * consensus_12619#2 GAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCG-TTCTCTCATAATTTGTT 262 consensus_12619#3 GAAANAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCG-TTCTCTCATAATTTGTT 247 consensus_12619#0 GAAAGAATTGGAAGGGGATATATCTCTCAATCCGATTGGCCG-TTCTCTCATAATTTGTT 1298 consensus_12619#1 CTCAAGTTCAGAAGAGACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTT 557 * * **** * * * **** *** * * ** consensus_12619#2 GGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATAAAAAA 322 consensus_12619#3 GGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATAT 307 consensus_12619#0 GGTTGATTGTATGGAGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATAT 1358 consensus_12619#1 GATCTGTACACCAAAGGTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGC 617 * * * ** ** * ** ** * ** * ** * consensus_12619#2 AAAAAA---AAAAAAGAANACCCANNCGTACNCN-------------------------- 353 consensus_12619#3 GGATAGTCCATCAGAGGATNCTAAAAAAAAAAAAAAAAAAA------------------- 348 consensus_12619#0 GGATAGTCCATCAGAGGATACTACATTTTCCTTCTTGTTGGAGAAGTTGGGGATAATGCC 1418 consensus_12619#1 ATTTTATCGATAAAAGAAATCACAGATATGCCCAAATTACTTGCCCATGAATCAAATGGA 677 * * ** * * consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AGGGTAGACAGCGAGGATCAACTGGATACAACTCCTTCAAAAGACAACAGATGGTTGTTC 1478 consensus_12619#1 CATCATTCAGAGAAAGAGAGGACTGCTTTCATTTGTTAGCCTCAAAAGTTAGGATATGAA 737 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GGATGTGGATGGAAAATTGGAAACAACTAGTAGTGTAGTACTATTTCTAATCCAATACGC 1538 consensus_12619#1 GCGGCCAAACGACAGGACAGACCAATCAACTCAGTGATTGCAGATTGATGAGGGCATGTG 797 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 TTAATAAAGATATACCAAGCAGGCAAGCACAACGTTGATCTCAACCGTTGGCAGTAATCC 1598 consensus_12619#1 TTTATGTTTCTAATTTTCCTACCAATTTGTAAACTGTAAATGTTTTTTCGCGAATGCAAT 857 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 TTTACATATGGTAGTACCAGAATTTCCAGACAACAGATTTATCTACCACCACACACATAC 1658 consensus_12619#1 AAACTGTAAATGTAAAGACTTCATGTGCAATTTACAAACTGATAGGCCAATTACAAACTT 917 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 ATTTCGCTGCAAAATTATGTAAAGCTAATCACAACCCAGCCAAGCTGACGAGATACTGGT 1718 consensus_12619#1 CATAATAGTTCATATCATGTCTTCTTTCTACAAGTCTACAACGATAAGATGTGCACAGGT 977 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 TAGGAATAGGGCCCTAGAGAGAGAACATGGAGGGGACAAAAATGAAAGACGGCTACAGTG 1778 consensus_12619#1 GAAGAATTGTCCCGATTGATCAGCAAAGCTGCAAAGGTACCAAATGCAAATGCATGCTCA 1037 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 ACAACGAGAACATAGATTGTTCACTGGTGTGATAAATCTAGTGAGAACATTTCTCAACAG 1838 consensus_12619#1 CAGTCACAGATGCATGAGGGAAATCTGACACCTGAGCAGCCATGGAGCCCCATCTTTCAG 1097 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AAACAAGCAAGAAAGCAAACGAACTATGGTAACGACGAAATGATATGATACATCGGGATA 1898 consensus_12619#1 TACGTAGTGATCAGAAAATGCTTAACTTATTCAAGCCAAACGTGACAATTATCTTTTTCT 1157 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GTAAAATGGTGCTCAGGCCCTGGCAACGAGTTTTTGCTGCCTCCTTAGATGACGGTTCTG 1958 consensus_12619#1 TTCAGAAGCCTTAAACAAACCTAGCTGCCGCAGAACAGAACAACTATCCACTTGTCAGAT 1217 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CTCTTGTCGTTGTATCCGGCACATAGATGCCTTCTCCTTGAGCTCTTGGAATGCCCGCAT 2018 consensus_12619#1 GTTCTCGCTACTTACAATCTAACGAAGTGACAAAACTGTAGATCTCAGATCAAACGGTAT 1277 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GGTGTCCACGTCGAACCCGCCTGCAAACTGCAGCAAACGAGGAGTATGGATGTGATTCGT 2078 consensus_12619#1 CCAAGAAATTTTACACTAGTAGTACTAGCTTAGCTTCTCTCGTGAGGCTCCAAATCCTGC 1337 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 TTCAAAGTTGCACCTTGGAAGAAAATGTAAGCATGAATTCTTTTCAGAAATTATTCATGC 2138 consensus_12619#1 CGAAACACACAAGCAGCAAATCCACACAAACATCCACACGGTGCA--------------- 1382 consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GCATCTTAACATCTTAGCGAGTAAATATATACCTGGTGTACCCTGAAGGCGAATCGCACT 2198 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 CCTTGAAGCATTAGTTCTTCTTCGTCAGGACCACCCTTTATGGCCTCAAGTTCAGAAGAG 2258 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 ACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTACACCAAAG 2318 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 GTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAG 2378 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AAATCACAGATATGCCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAG 2438 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 AGAGGACTGCTTTCATTTGTTAGCCTCAAAAGTTAGGATATGAAGCGGCCAAACGACAGG 2498 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 ACAGACCAATCAACTCAGTGATTGCAGATTGATGAGGGCATGTGTTTATGTTTCTAATTT 2558 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ------------------------------------------------------------ consensus_12619#3 ------------------------------------------------------------ consensus_12619#0 TCCTACCAATTTGTAAACTGTAAATGTTTTTTCGCGAATGCAATAAACTGTAAATGTAAA 2618 consensus_12619#1 ------------------------------------------------------------ consensus_12619#2 ---------------------- consensus_12619#3 ---------------------- consensus_12619#0 GACTTCATGTGCAATTTACAAA 2640 consensus_12619#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||