These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 850 fasta sequence [CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC-TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC-TTTGGTTGTCTAGATGTAAG-CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAT----AAAAAAAAAAAAAAAA] [+] EMBL AK071587 [CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCTCAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAG CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACT ] [+] EMBL CA764445 [ GATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGACGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCAGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTTGGTTGGCTAGATGTAAG CCGCCCTGGAATTTTCTATTTNT TCATAGAAAGGCATCTCTTAAACTGNGCCTGATCTGATCGTCAAGNTAGNGCAACTTTTAATTGACGGAATTACGTCTGGAACATGNAGNTNTGC ACTAANACTGCAGAAGG AATTGCAGAACTGgcat ] [+] EMBL CF295305 [ CACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACA ] [+] EMBL AU172963 [ ACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCA ] [+] EMBL CF302081 [ CAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGC ] [+] EMBL CF305253 [ AGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACTAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTGCCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCTTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAA ] [+] EMBL OSSRP14 [ AAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAGCCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAA AAAAAAAAAA ] [+] EMBL OSS1544A [ GAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAG ACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTTGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGT ] [-] EMBL CA763198 [ AAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGCCAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCCCCGAAGAAGCAGAAGAAAGCCCCGTCTTCAAAGAAATTTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCCTTTTACTCTTATTCATGTTTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAA CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATTGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTTTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATCTGGAAAAAAAAAAAAAAAA] [+] EMBL AU033038 [ gntgGGGTGTAGTCAAGNCATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTNCCGTCGNCATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAG CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGNATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAA AAAAAAAAAA ] consensusID : consensus_12620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA] [+] EMBL AU058358 [TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12620#0 CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAA 60 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 ACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCG 120 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 TTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTC 180 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 ACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGA 240 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 GAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACC 300 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 GCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCC 360 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 CATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAG 420 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 AAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCA 480 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 GGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGA 540 consensus_12620#1 ---------TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGN 51 ************************************************** consensus_12620#0 GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT 600 consensus_12620#1 GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT 111 ************************************************************ consensus_12620#0 GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT 660 consensus_12620#1 GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT 171 ************************************************************ consensus_12620#0 TTGGTTGTCTAGATGTAAGCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTC 720 consensus_12620#1 TTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNN 231 ************************ ***************** * ***** *** * consensus_12620#0 TTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTC 780 consensus_12620#1 TTNA-------------------------------------------------------- 235 ** * consensus_12620#0 TGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATAAAAAA 840 consensus_12620#1 ------------------------------------------------------------ consensus_12620#0 AAAAAAAAAA 850 consensus_12620#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||